pydna 5.5.4__py3-none-any.whl → 5.5.5__py3-none-any.whl

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Files changed (44) hide show
  1. pydna/__init__.py +24 -193
  2. pydna/_pretty.py +8 -8
  3. pydna/_thermodynamic_data.py +3 -3
  4. pydna/alphabet.py +995 -0
  5. pydna/amplicon.py +19 -24
  6. pydna/amplify.py +75 -95
  7. pydna/assembly.py +64 -81
  8. pydna/assembly2.py +283 -294
  9. pydna/codon.py +4 -4
  10. pydna/common_sub_strings.py +6 -8
  11. pydna/contig.py +203 -10
  12. pydna/design.py +176 -60
  13. pydna/download.py +6 -15
  14. pydna/dseq.py +1794 -718
  15. pydna/dseqrecord.py +170 -169
  16. pydna/gateway.py +6 -6
  17. pydna/gel.py +5 -5
  18. pydna/genbank.py +43 -46
  19. pydna/genbankfixer.py +89 -92
  20. pydna/ladders.py +11 -12
  21. pydna/oligonucleotide_hybridization.py +124 -0
  22. pydna/opencloning_models.py +187 -60
  23. pydna/parsers.py +45 -32
  24. pydna/primer.py +4 -4
  25. pydna/primer_screen.py +833 -0
  26. pydna/readers.py +14 -9
  27. pydna/seq.py +137 -47
  28. pydna/seqrecord.py +54 -62
  29. pydna/sequence_picker.py +2 -5
  30. pydna/sequence_regex.py +6 -6
  31. pydna/tm.py +17 -17
  32. pydna/types.py +19 -19
  33. pydna/utils.py +97 -75
  34. {pydna-5.5.4.dist-info → pydna-5.5.5.dist-info}/METADATA +8 -8
  35. pydna-5.5.5.dist-info/RECORD +43 -0
  36. {pydna-5.5.4.dist-info → pydna-5.5.5.dist-info}/WHEEL +1 -1
  37. pydna/conftest.py +0 -42
  38. pydna/genbankfile.py +0 -42
  39. pydna/genbankrecord.py +0 -168
  40. pydna/goldengate.py +0 -45
  41. pydna/ligate.py +0 -62
  42. pydna/user_cloning.py +0 -29
  43. pydna-5.5.4.dist-info/RECORD +0 -46
  44. {pydna-5.5.4.dist-info → pydna-5.5.5.dist-info}/licenses/LICENSE.txt +0 -0
pydna/download.py CHANGED
@@ -6,27 +6,18 @@
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  # as part of this package.
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  """Provides a function for downloading online text files."""
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- import textwrap as _textwrap
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+ import textwrap
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- # import os as _os
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- from pydna._pretty import pretty_str as _pretty_str
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+ from pydna._pretty import pretty_str as ps
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- # from pydna.utils import memorize as _memorize
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- # import logging as _logging
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- # _module_logger = _logging.getLogger("pydna." + __name__)
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-
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-
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- # @_memorize("pydna.download.download_text")
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  def download_text(url):
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  """docstring."""
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  import requests
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- # _module_logger.info("#### DOWNLOAD TEXT ####")
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- # _module_logger.info("url = %s", url)
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  req = requests.get(url)
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- # _module_logger.info("url = %s", str(req))
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- result = _textwrap.dedent(req.text).strip()
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+
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+ result = textwrap.dedent(req.text).strip()
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  result = result.replace("\r\n", "\n").replace("\r", "\n")
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- # _module_logger.info("result[:160] = %s", result[:160])
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- return _pretty_str(result)
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+
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+ return ps(result)