pydartdiags 0.0.4__py3-none-any.whl → 0.0.41__py3-none-any.whl

pydartdiags/obs_sequence/obs_sequence.py

@@ -60,7 +60,8 @@ class obs_sequence:
                         'AIRS observation', 
                         'GTSPP observation', 
                         'SST observation',
-                        'observations']
+                        'observations',
+                        'WOD observation']
     
     def __init__(self, file):
         self.loc_mod = 'None'

pydartdiags/plots/plots.py

@@ -29,7 +29,7 @@ def calculate_rank(df):
 
     Parameters:
         df (pd.DataFrame): A DataFrame with columns for mean, standard deviation, observed values,
-        ensemble size, and observation type. The DataFrame should have one row per observation.
+                           ensemble size, and observation type. The DataFrame should have one row per observation.
 
     Returns:
         tuple: A tuple containing the rank array, ensemble size, and a result DataFrame. The result
@@ -125,7 +125,9 @@ def mean_then_sqrt(x):
 
     Raises:
         TypeError: If the input is not an array-like object containing numeric values.
+         ValueError: If the input array is empty.
     """
+        
     return np.sqrt(np.mean(x))
 
 def rmse_bias(df):

{pydartdiags-0.0.4.dist-info → pydartdiags-0.0.41.dist-info}/METADATA

@@ -1,30 +1,36 @@
-Metadata-Version: 2.3
+Metadata-Version: 2.1
 Name: pydartdiags
-Version: 0.0.4
+Version: 0.0.41
 Summary: Observation Sequence Diagnostics for DART
+Home-page: https://github.com/NCAR/pyDARTdiags.git
+Author: Helen Kershaw
+Author-email: Helen Kershaw <hkershaw@ucar.edu>
 Project-URL: Homepage, https://github.com/NCAR/pyDARTdiags.git
 Project-URL: Issues, https://github.com/NCAR/pyDARTdiags/issues
 Project-URL: Documentation, https://ncar.github.io/pyDARTdiags
-Author-email: Helen Kershaw <hkershaw@ucar.edu>
-License-File: LICENSE
+Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: Apache Software License
 Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3
 Requires-Python: >=3.8
-Requires-Dist: numpy>=1.26
+Description-Content-Type: text/markdown
+License-File: LICENSE
 Requires-Dist: pandas>=2.2.0
+Requires-Dist: numpy>=1.26
 Requires-Dist: plotly>=5.22.0
-Description-Content-Type: text/markdown
+Requires-Dist: pyyaml>=6.0.2
 
 # pyDARTdiags
 
-pyDARTdiags is a python library for obsevation space diagnostics for the Data Assimilation Research Testbed ([DART](https://github.com/NCAR/DART)).
+pyDARTdiags is a Python library for obsevation space diagnostics for the Data Assimilation Research Testbed ([DART](https://github.com/NCAR/DART)).
 
 pyDARTdiags is under initial development, so please use caution.
 The MATLAB [observation space diagnostics](https://docs.dart.ucar.edu/en/latest/guide/matlab-observation-space.html) are available through [DART](https://github.com/NCAR/DART).
 
 
-pyDARTdiags can be installed through pip.  We recommend installing pydartdiags in a virtual enviroment:
+pyDARTdiags can be installed through pip: https://pypi.org/project/pydartdiags/  
+Documenation : https://ncar.github.io/pyDARTdiags/
+
+We recommend installing pydartdiags in a virtual enviroment:
 
 
 ```
@@ -36,14 +42,14 @@ pip install pydartdiags
 ## Example importing the obs\_sequence and plots modules
 
 ```python
-from pydartdiags.obs_sequence import obs_sequence as obs_seq
+from pydartdiags.obs_sequence import obs_sequence as obsq
 from pydartdiags.plots import plots
 ```
 
 ## Examining the dataframe
 
 ```python
-obs_seq = obs_seq.obs_sequence('obs_seq.final.ascii')
+obs_seq = obsq.obs_sequence('obs_seq.final.ascii')
 obs_seq.df.head()
 ```
 
@@ -204,7 +210,7 @@ obs_seq.df.head()
 Find the numeber of assimilated (used) observations vs. possible observations by type
 
 ```python
-obs_seq.possible_vs_used(obs_seq.df)
+obsq.possible_vs_used(obs_seq.df)
 ```
 
 <table border="1" class="dataframe">
@@ -361,7 +367,7 @@ obs_seq.possible_vs_used(obs_seq.df)
 * plot the rank histogram
 
 ```python
-df_qc0 = obs_seq.select_by_dart_qc(obs_seq.df, 0) 
+df_qc0 = obsq.select_by_dart_qc(obs_seq.df, 0) 
 plots.plot_rank_histogram(df_qc0)
 ```
 ![Rank Histogram](docs/images/rankhist.png)
@@ -377,7 +383,7 @@ plots.plot_rank_histogram(df_qc0)
 hPalevels = [0.0, 100.0,  150.0, 200.0, 250.0, 300.0, 400.0, 500.0, 700, 850, 925, 1000]# float("inf")] # Pa?
 plevels = [i * 100 for i in hPalevels]
 
-df_qc0 = obs_seq.select_by_dart_qc(obs_seq.df, 0)  # only qc 0
+df_qc0 = obsq.select_by_dart_qc(obs_seq.df, 0)  # only qc 0
 df_profile, figrmse, figbias = plots.plot_profile(df_qc0, plevels)
 ```
 
@@ -390,4 +396,4 @@ Contributions are welcome! If you have a feature request, bug report, or a sugge
 
 ## License
 
-DartLabPlot is released under the Apache License 2.0. For more details, see the LICENSE file in the root directory of this source tree or visit [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0).
+pyDARTdiags is released under the Apache License 2.0. For more details, see the LICENSE file in the root directory of this source tree or visit [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0).

pydartdiags-0.0.41.dist-info/RECORD

@@ -0,0 +1,10 @@
+pydartdiags/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+pydartdiags/obs_sequence/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+pydartdiags/obs_sequence/obs_sequence.py,sha256=WrQ4lFymM1y9KVBl-_SzMR7E_VfPQJ8b4kHcVnIyEOc,21817
+pydartdiags/plots/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+pydartdiags/plots/plots.py,sha256=_vZFgQ9qrmtwE_HAP6_nx3pV4JHRdnYckZ5xUxUH4io,6753
+pydartdiags-0.0.41.dist-info/LICENSE,sha256=ROglds_Eg_ylXp-1MHmEawDqMw_UsCB4r9sk7z9PU9M,11377
+pydartdiags-0.0.41.dist-info/METADATA,sha256=LP13-RMWfmd54Fifdp_r3GDhzfzvd3X-kMFAmR6cA5s,9345
+pydartdiags-0.0.41.dist-info/WHEEL,sha256=UvcQYKBHoFqaQd6LKyqHw9fxEolWLQnlzP0h_LgJAfI,91
+pydartdiags-0.0.41.dist-info/top_level.txt,sha256=LfMoPLnSd0VhhlWev1eeX9t6AzvyASOloag0LO_ppWg,12
+pydartdiags-0.0.41.dist-info/RECORD,,

{pydartdiags-0.0.4.dist-info → pydartdiags-0.0.41.dist-info}/WHEEL

@@ -1,4 +1,5 @@
 Wheel-Version: 1.0
-Generator: hatchling 1.25.0
+Generator: setuptools (74.0.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
+

pydartdiags-0.0.41.dist-info/top_level.txt

@@ -0,0 +1 @@
+pydartdiags

pydartdiags/obs_sequence/composite_types.yaml

@@ -1,35 +0,0 @@
-acars_horizontal_wind:
-  description: ACARS-derived Horizontal wind speed
-  components:
-    - acars_u_wind_component
-    - acars_v_wind_component
-
-sat_horizontal_wind:
-  description: Satellite-derived horizontal wind speed
-  components:
-    - sat_u_wind_component
-    - sat_v_wind_component
-
-radiosonde_horizontal_wind:
-  description: Radiosonde-derived horizontal wind speed
-  components:
-    - radiosonde_u_wind_component
-    - radiosonde_v_wind_component
-
-aircraft_horizontal_wind:
-  description: Aircraft-derived horizontal wind speed
-  components:
-    - aircraft_u_wind_component
-    - aircraft_v_wind_component
-
-10_m_horizontal_wind:
-  description: 10 meter horizontal wind speed
-  components:
-    - 10m_u_wind_component
-    - 10m_v_wind_component
-
-marine_sfc_horizontal_wind:
-  description: Marine surface horizontal wind speed
-  components:
-    - marine_sfc_u_wind_component
-    - marine_sfc_v_wind_component

pydartdiags/plots/tests/test_rank_histogram.py

@@ -1,18 +0,0 @@
-import pandas as pd
-import numpy as np
-
-# Example DataFrame setup
-data = {
-    'observation': [2.5, 3.0, 4.5],  # Actual observation values
-    'obs_err_var': [0.1, 0.2, 0.3],  # Variance of the observation error
-    'prior_ensemble_member1': [2.3, 3.1, 4.6],
-    'prior_ensemble_member2': [2.4, 2.9, 4.4],
-    'prior_ensemble_member3': [2.5, 3.2, 4.5]
-}
-df = pd.DataFrame(data)
-
-# Call the function
-rank, ens_size, _ = calculate_rank(df)
-
-print("Rank:", rank)
-print("Ensemble Size:", ens_size)

pydartdiags-0.0.4.dist-info/RECORD

@@ -1,11 +0,0 @@
-pydartdiags/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pydartdiags/obs_sequence/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pydartdiags/obs_sequence/composite_types.yaml,sha256=PVLMU6x6KcVMCwPB-U65C_e0YQUemfqUhYMpf1DhFOY,917
-pydartdiags/obs_sequence/obs_sequence.py,sha256=-TIUBfr8WGEWvEp94wlS6twNC7TNPMXKP3jrQ9isOiE,21774
-pydartdiags/plots/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pydartdiags/plots/plots.py,sha256=8Tp1huRjnOPx24cFt8F92NwMKWUluGA-Ha8ixx6rCWk,6675
-pydartdiags/plots/tests/test_rank_histogram.py,sha256=qfws9oX6Sj0BwO3aFUa74smeHfHxzSR3-TloT4C8D_4,495
-pydartdiags-0.0.4.dist-info/METADATA,sha256=WmlqzRe1w3saI3CLlz0uIkaijJAGBl3Gl0emF16IlS4,9166
-pydartdiags-0.0.4.dist-info/WHEEL,sha256=1yFddiXMmvYK7QYTqtRNtX66WJ0Mz8PYEiEUoOUUxRY,87
-pydartdiags-0.0.4.dist-info/licenses/LICENSE,sha256=ROglds_Eg_ylXp-1MHmEawDqMw_UsCB4r9sk7z9PU9M,11377
-pydartdiags-0.0.4.dist-info/RECORD,,