pydartdiags 0.0.42__py3-none-any.whl → 0.5.0__py3-none-any.whl

pydartdiags-0.5.0.dist-info/METADATA

@@ -0,0 +1,49 @@
+Metadata-Version: 2.2
+Name: pydartdiags
+Version: 0.5.0
+Summary: Observation Sequence Diagnostics for DART
+Home-page: https://github.com/NCAR/pyDARTdiags.git
+Author: Helen Kershaw
+Author-email: Helen Kershaw <hkershaw@ucar.edu>
+Project-URL: Homepage, https://github.com/NCAR/pyDARTdiags.git
+Project-URL: Issues, https://github.com/NCAR/pyDARTdiags/issues
+Project-URL: Documentation, https://ncar.github.io/pyDARTdiags
+Classifier: Programming Language :: Python :: 3
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Operating System :: OS Independent
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: pandas>=2.2.0
+Requires-Dist: numpy>=1.26
+Requires-Dist: plotly>=5.22.0
+Requires-Dist: pyyaml>=6.0.2
+Requires-Dist: matplotlib>=3.9.4
+Dynamic: author
+Dynamic: home-page
+Dynamic: requires-python
+
+[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
+[![codecov](https://codecov.io/gh/NCAR/pyDARTdiags/graph/badge.svg?token=VK55SQZSVD)](https://codecov.io/gh/NCAR/pyDARTdiags)
+[![PyPI version](https://badge.fury.io/py/pydartdiags.svg)](https://pypi.org/project/pydartdiags/)
+[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+
+# pyDARTdiags
+
+pyDARTdiags is a Python library for observation space diagnostics for the Data Assimilation Research Testbed ([DART](https://github.com/NCAR/DART)).
+
+pyDARTdiags is under initial development, so please use caution.
+The MATLAB [observation space diagnostics](https://docs.dart.ucar.edu/en/latest/guide/matlab-observation-space.html) are available through [DART](https://github.com/NCAR/DART).
+
+
+pyDARTdiags can be installed through pip: https://pypi.org/project/pydartdiags/  
+Documentation : https://ncar.github.io/pyDARTdiags/
+
+## Contributing
+Contributions are welcome! If you have a feature request, bug report, or a suggestion, please open an issue on our GitHub repository.
+Please read our [Contributors Guide](https://github.com/NCAR/pyDARTdiags/blob/main/CONTRIBUTING.md) if you would like to contribute to
+pyDARTdiags.
+
+## License
+
+pyDARTdiags is released under the Apache License 2.0. For more details, see the LICENSE file in the root directory of this source tree or visit [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0).

pydartdiags-0.5.0.dist-info/RECORD

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+pydartdiags/matplots/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+pydartdiags/matplots/matplots.py,sha256=44MlD98gaQsrCT0mW6M9f0a2-clm3KEGrdYqkTUO0RI,7478
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{pydartdiags-0.0.42.dist-info → pydartdiags-0.5.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.1.0)
+Generator: setuptools (75.8.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

pydartdiags-0.0.42.dist-info/METADATA

@@ -1,404 +0,0 @@
-Metadata-Version: 2.1
-Name: pydartdiags
-Version: 0.0.42
-Summary: Observation Sequence Diagnostics for DART
-Home-page: https://github.com/NCAR/pyDARTdiags.git
-Author: Helen Kershaw
-Author-email: Helen Kershaw <hkershaw@ucar.edu>
-Project-URL: Homepage, https://github.com/NCAR/pyDARTdiags.git
-Project-URL: Issues, https://github.com/NCAR/pyDARTdiags/issues
-Project-URL: Documentation, https://ncar.github.io/pyDARTdiags
-Classifier: Programming Language :: Python :: 3
-Classifier: License :: OSI Approved :: Apache Software License
-Classifier: Operating System :: OS Independent
-Requires-Python: >=3.8
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: pandas>=2.2.0
-Requires-Dist: numpy>=1.26
-Requires-Dist: plotly>=5.22.0
-Requires-Dist: pyyaml>=6.0.2
-
-[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)
-[![codecov](https://codecov.io/gh/NCAR/pyDARTdiags/graph/badge.svg?token=VK55SQZSVD)](https://codecov.io/gh/NCAR/pyDARTdiags)
-[![PyPI version](https://badge.fury.io/py/pydartdiags.svg)](https://pypi.org/project/pydartdiags/)
-
-
-# pyDARTdiags
-
-pyDARTdiags is a Python library for obsevation space diagnostics for the Data Assimilation Research Testbed ([DART](https://github.com/NCAR/DART)).
-
-pyDARTdiags is under initial development, so please use caution.
-The MATLAB [observation space diagnostics](https://docs.dart.ucar.edu/en/latest/guide/matlab-observation-space.html) are available through [DART](https://github.com/NCAR/DART).
-
-
-pyDARTdiags can be installed through pip: https://pypi.org/project/pydartdiags/  
-Documenation : https://ncar.github.io/pyDARTdiags/
-
-We recommend installing pydartdiags in a virtual enviroment:
-
-
-```
-python3 -m venv dartdiags
-source dartdiags/bin/activate
-pip install pydartdiags
-```
-
-## Example importing the obs\_sequence and plots modules
-
-```python
-from pydartdiags.obs_sequence import obs_sequence as obsq
-from pydartdiags.plots import plots
-```
-
-## Examining the dataframe
-
-```python
-obs_seq = obsq.obs_sequence('obs_seq.final.ascii')
-obs_seq.df.head()
-```
-
-<table border="1" class="dataframe">
-  <thead>
-    <tr style="text-align: right;">
-      <th></th>
-      <th>obs_num</th>
-      <th>observation</th>
-      <th>prior_ensemble_mean</th>
-      <th>prior_ensemble_spread</th>
-      <th>prior_ensemble_member_1</th>
-      <th>prior_ensemble_member_2</th>
-      <th>prior_ensemble_member_3</th>
-      <th>prior_ensemble_member_4</th>
-      <th>prior_ensemble_member_5</th>
-      <th>prior_ensemble_member_6</th>
-      <th>...</th>
-      <th>latitude</th>
-      <th>vertical</th>
-      <th>vert_unit</th>
-      <th>type</th>
-      <th>seconds</th>
-      <th>days</th>
-      <th>time</th>
-      <th>obs_err_var</th>
-      <th>bias</th>
-      <th>sq_err</th>
-    </tr>
-  </thead>
-  <tbody>
-    <tr>
-      <th>0</th>
-      <td>1</td>
-      <td>230.16</td>
-      <td>231.310652</td>
-      <td>0.405191</td>
-      <td>231.304725</td>
-      <td>231.562874</td>
-      <td>231.333915</td>
-      <td>231.297690</td>
-      <td>232.081416</td>
-      <td>231.051063</td>
-      <td>...</td>
-      <td>0.012188</td>
-      <td>23950.0</td>
-      <td>pressure (Pa)</td>
-      <td>ACARS_TEMPERATURE</td>
-      <td>75603</td>
-      <td>153005</td>
-      <td>2019-12-01 21:00:03</td>
-      <td>1.00</td>
-      <td>1.150652</td>
-      <td>1.324001</td>
-    </tr>
-    <tr>
-      <th>1</th>
-      <td>2</td>
-      <td>18.40</td>
-      <td>15.720527</td>
-      <td>0.630827</td>
-      <td>14.217207</td>
-      <td>15.558196</td>
-      <td>15.805599</td>
-      <td>16.594644</td>
-      <td>14.877743</td>
-      <td>16.334438</td>
-      <td>...</td>
-      <td>0.012188</td>
-      <td>23950.0</td>
-      <td>pressure (Pa)</td>
-      <td>ACARS_U_WIND_COMPONENT</td>
-      <td>75603</td>
-      <td>153005</td>
-      <td>2019-12-01 21:00:03</td>
-      <td>6.25</td>
-      <td>-2.679473</td>
-      <td>7.179578</td>
-    </tr>
-    <tr>
-      <th>2</th>
-      <td>3</td>
-      <td>1.60</td>
-      <td>-4.932073</td>
-      <td>0.825899</td>
-      <td>-5.270562</td>
-      <td>-5.955998</td>
-      <td>-4.209766</td>
-      <td>-5.105016</td>
-      <td>-4.669405</td>
-      <td>-4.365305</td>
-      <td>...</td>
-      <td>0.012188</td>
-      <td>23950.0</td>
-      <td>pressure (Pa)</td>
-      <td>ACARS_V_WIND_COMPONENT</td>
-      <td>75603</td>
-      <td>153005</td>
-      <td>2019-12-01 21:00:03</td>
-      <td>6.25</td>
-      <td>-6.532073</td>
-      <td>42.667980</td>
-    </tr>
-    <tr>
-      <th>3</th>
-      <td>4</td>
-      <td>264.16</td>
-      <td>264.060532</td>
-      <td>0.035584</td>
-      <td>264.107192</td>
-      <td>264.097270</td>
-      <td>264.073212</td>
-      <td>264.047718</td>
-      <td>264.074140</td>
-      <td>264.019895</td>
-      <td>...</td>
-      <td>0.010389</td>
-      <td>56260.0</td>
-      <td>pressure (Pa)</td>
-      <td>ACARS_TEMPERATURE</td>
-      <td>75603</td>
-      <td>153005</td>
-      <td>2019-12-01 21:00:03</td>
-      <td>1.00</td>
-      <td>-0.099468</td>
-      <td>0.009894</td>
-    </tr>
-    <tr>
-      <th>4</th>
-      <td>5</td>
-      <td>11.60</td>
-      <td>10.134115</td>
-      <td>0.063183</td>
-      <td>10.067956</td>
-      <td>10.078798</td>
-      <td>10.120263</td>
-      <td>10.084885</td>
-      <td>10.135112</td>
-      <td>10.140610</td>
-      <td>...</td>
-      <td>0.010389</td>
-      <td>56260.0</td>
-      <td>pressure (Pa)</td>
-      <td>ACARS_U_WIND_COMPONENT</td>
-      <td>75603</td>
-      <td>153005</td>
-      <td>2019-12-01 21:00:03</td>
-      <td>6.25</td>
-      <td>-1.465885</td>
-      <td>2.148818</td>
-    </tr>
-  </tbody>
-</table>
-<p>5 rows × 97 columns</p>
-</div>
-
-
-Find the numeber of assimilated (used) observations vs. possible observations by type
-
-```python
-obsq.possible_vs_used(obs_seq.df)
-```
-
-<table border="1" class="dataframe">
-  <thead>
-    <tr style="text-align: right;">
-      <th></th>
-      <th>type</th>
-      <th>possible</th>
-      <th>used</th>
-    </tr>
-  </thead>
-  <tbody>
-    <tr>
-      <th>0</th>
-      <td>ACARS_TEMPERATURE</td>
-      <td>175429</td>
-      <td>128040</td>
-    </tr>
-    <tr>
-      <th>1</th>
-      <td>ACARS_U_WIND_COMPONENT</td>
-      <td>176120</td>
-      <td>126946</td>
-    </tr>
-    <tr>
-      <th>2</th>
-      <td>ACARS_V_WIND_COMPONENT</td>
-      <td>176120</td>
-      <td>127834</td>
-    </tr>
-    <tr>
-      <th>3</th>
-      <td>AIRCRAFT_TEMPERATURE</td>
-      <td>21335</td>
-      <td>13663</td>
-    </tr>
-    <tr>
-      <th>4</th>
-      <td>AIRCRAFT_U_WIND_COMPONENT</td>
-      <td>21044</td>
-      <td>13694</td>
-    </tr>
-    <tr>
-      <th>5</th>
-      <td>AIRCRAFT_V_WIND_COMPONENT</td>
-      <td>21044</td>
-      <td>13642</td>
-    </tr>
-    <tr>
-      <th>6</th>
-      <td>AIRS_SPECIFIC_HUMIDITY</td>
-      <td>6781</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>7</th>
-      <td>AIRS_TEMPERATURE</td>
-      <td>19583</td>
-      <td>7901</td>
-    </tr>
-    <tr>
-      <th>8</th>
-      <td>GPSRO_REFRACTIVITY</td>
-      <td>81404</td>
-      <td>54626</td>
-    </tr>
-    <tr>
-      <th>9</th>
-      <td>LAND_SFC_ALTIMETER</td>
-      <td>21922</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>10</th>
-      <td>MARINE_SFC_ALTIMETER</td>
-      <td>9987</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>11</th>
-      <td>MARINE_SFC_SPECIFIC_HUMIDITY</td>
-      <td>4196</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>12</th>
-      <td>MARINE_SFC_TEMPERATURE</td>
-      <td>8646</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>13</th>
-      <td>MARINE_SFC_U_WIND_COMPONENT</td>
-      <td>8207</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>14</th>
-      <td>MARINE_SFC_V_WIND_COMPONENT</td>
-      <td>8207</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>15</th>
-      <td>RADIOSONDE_SPECIFIC_HUMIDITY</td>
-      <td>14272</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>16</th>
-      <td>RADIOSONDE_SURFACE_ALTIMETER</td>
-      <td>601</td>
-      <td>0</td>
-    </tr>
-    <tr>
-      <th>17</th>
-      <td>RADIOSONDE_TEMPERATURE</td>
-      <td>29275</td>
-      <td>22228</td>
-    </tr>
-    <tr>
-      <th>18</th>
-      <td>RADIOSONDE_U_WIND_COMPONENT</td>
-      <td>36214</td>
-      <td>27832</td>
-    </tr>
-    <tr>
-      <th>19</th>
-      <td>RADIOSONDE_V_WIND_COMPONENT</td>
-      <td>36214</td>
-      <td>27975</td>
-    </tr>
-    <tr>
-      <th>20</th>
-      <td>SAT_U_WIND_COMPONENT</td>
-      <td>107212</td>
-      <td>82507</td>
-    </tr>
-    <tr>
-      <th>21</th>
-      <td>SAT_V_WIND_COMPONENT</td>
-      <td>107212</td>
-      <td>82647</td>
-    </tr>
-  </tbody>
-</table>
-
-
-## Example plotting
-
-### rank histogram
-
-* Select only observations that were assimliated (QC === 0).
-* plot the rank histogram
-
-```python
-df_qc0 = obsq.select_by_dart_qc(obs_seq.df, 0) 
-plots.plot_rank_histogram(df_qc0)
-```
-![Rank Histogram](https://raw.githubusercontent.com/NCAR/pydartdiags/main/docs/images/rankhist.png)
-
-
-### plot profile of RMSE and Bias 
-
-* Chose levels
-* Select only observations that were assimliated (QC === 0).
-* plot the profiles
-
-```python
-hPalevels = [0.0, 100.0,  150.0, 200.0, 250.0, 300.0, 400.0, 500.0, 700, 850, 925, 1000]# float("inf")] # Pa?
-plevels = [i * 100 for i in hPalevels]
-
-df_qc0 = obsq.select_by_dart_qc(obs_seq.df, 0)  # only qc 0
-df_profile, figrmse, figbias = plots.plot_profile(df_qc0, plevels)
-```
-
-![RMSE Plot](https://raw.githubusercontent.com/NCAR/pydartdiags/main/docs/images/rmse.png)
-
-![Bias Plot](https://raw.githubusercontent.com/NCAR/pydartdiags/main/docs/images/bias.png)
-
-## Contributing
-Contributions are welcome! If you have a feature request, bug report, or a suggestion, please open an issue on our GitHub repository.
-
-## License
-
-pyDARTdiags is released under the Apache License 2.0. For more details, see the LICENSE file in the root directory of this source tree or visit [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0).

pydartdiags-0.0.42.dist-info/RECORD

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