pycontrails 0.53.0__cp313-cp313-macosx_10_13_x86_64.whl

pycontrails/datalib/ecmwf/ifs.py

@@ -0,0 +1,284 @@
+"""ECWMF IFS forecast data access."""
+
+from __future__ import annotations
+
+import logging
+import pathlib
+import warnings
+from datetime import datetime
+from typing import Any
+
+LOG = logging.getLogger(__name__)
+
+import numpy as np
+import pandas as pd
+import xarray as xr
+from overrides import overrides
+
+from pycontrails.core import met
+from pycontrails.datalib._met_utils import metsource
+from pycontrails.datalib.ecmwf.variables import ECMWF_VARIABLES
+from pycontrails.physics import constants
+from pycontrails.utils.types import DatetimeLike
+
+
+class IFS(metsource.MetDataSource):
+    """
+    ECMWF Integrated Forecasting System (IFS) data source.
+
+    .. warning::
+
+        This data source is not fully implemented.
+
+    Parameters
+    ----------
+    time : metsource.TimeInput | None
+        The time range for data retrieval, either a single datetime or (start, end) datetime range.
+        Input must be a single datetime-like or tuple of datetime-like
+        (datetime, :class:`pandas.Timestamp`, :class:`numpy.datetime64`)
+        specifying the (start, end) of the date range, inclusive.
+        If None, all time coordinates will be loaded.
+    variables : metsource.VariableInput
+        Variable name (i.e. "air_temperature", ["air_temperature, relative_humidity"])
+        See :attr:`pressure_level_variables` for the list of available variables.
+    pressure_levels : metsource.PressureLevelInput, optional
+        Pressure level bounds for data (min, max), in hPa (mbar)
+        Set to -1 for to download surface level parameters.
+        Defaults to -1.
+    paths : str | list[str] | pathlib.Path | list[pathlib.Path] | None, optional
+        UNSUPPORTED FOR IFS
+    forecast_path: str | pathlib.Path | None, optional
+        Path to local forecast files.
+        Defaults to None
+    forecast_date: DatetimeLike, optional
+        Forecast date to load specific netcdf files.
+        Defaults to None
+
+    Notes
+    -----
+    This takes an average pressure of the model level to create
+    pressure level dimensions.
+    """
+
+    __slots__ = ("forecast_date", "forecast_path")
+
+    #: Root path of IFS data
+    forecast_path: pathlib.Path
+
+    #: Forecast datetime of IFS forecast
+    forecast_date: pd.Timestamp
+
+    def __init__(
+        self,
+        time: metsource.TimeInput | None,
+        variables: metsource.VariableInput,
+        pressure_levels: metsource.PressureLevelInput = -1,
+        paths: str | list[str] | pathlib.Path | list[pathlib.Path] | None = None,
+        grid: float | None = None,
+        forecast_path: str | pathlib.Path | None = None,
+        forecast_date: DatetimeLike | None = None,
+    ) -> None:
+        self.paths = paths  # TODO: this is currently unused
+        self.grid = grid  # TODO: this is currently unused
+
+        # path to forecast files
+        if forecast_path is None:
+            raise ValueError("Forecast path input is required for IFS")
+        self.forecast_path = pathlib.Path(forecast_path)
+
+        # TODO: automatically select a forecast_date from input time range?
+        self.forecast_date = pd.to_datetime(forecast_date).to_pydatetime()
+
+        # parse inputs
+        self.timesteps = metsource.parse_timesteps(time, freq="3h")
+        self.pressure_levels = metsource.parse_pressure_levels(pressure_levels, None)
+        self.variables = metsource.parse_variables(variables, self.supported_variables)
+
+    def __repr__(self) -> str:
+        base = super().__repr__()
+        return f"{base}\n\tForecast date: {self.forecast_date}"
+
+    @property
+    def supported_variables(self) -> list[met.MetVariable]:
+        """IFS parameters available.
+
+        Returns
+        -------
+        list[MetVariable] | None
+            List of MetVariable available in datasource
+        """
+        return ECMWF_VARIABLES
+
+    @property
+    def supported_pressure_levels(self) -> None:
+        """IFS does not provide constant pressure levels and instead uses model levels.
+
+        Returns
+        -------
+        list[int]
+        """
+        return None
+
+    @overrides
+    def open_metdataset(
+        self,
+        dataset: xr.Dataset | None = None,
+        xr_kwargs: dict[str, Any] | None = None,
+        **kwargs: Any,
+    ) -> met.MetDataset:
+        xr_kwargs = xr_kwargs or {}
+
+        #  short-circuit dataset or file paths if provided
+        if self.paths is not None or dataset is not None:
+            raise NotImplementedError("IFS input paths or input dataset is not supported")
+
+        # load / merge datasets
+        ds = self._open_ifs_dataset(**xr_kwargs)
+
+        # drop ancillary vars
+        ds = ds.drop_vars(names=["hyai", "hybi"])
+
+        # downselect dataset if only a subset of times, pressure levels, or variables are requested
+        if self.timesteps:
+            ds = ds.sel(time=self.timesteps)
+        else:
+            # set timesteps from dataset "time" coordinates
+            # np.datetime64 doesn't covert to list[datetime] unless its unit is us
+            self.timesteps = ds["time"].values.astype("datetime64[us]").tolist()
+
+        # downselect hyam/hybm coefficients by the "lev" coordinate
+        # (this is a 1-indexed verison of nhym)
+        ds["hyam"] = ds["hyam"][dict(nhym=(ds["lev"] - 1).astype(int))]
+        ds["hybm"] = ds["hybm"][dict(nhym=(ds["lev"] - 1).astype(int))]
+
+        # calculate air_pressure (Pa) by hybrid sigma pressure
+        ds["air_pressure"] = ds["hyam"] + (ds["hybm"] * ds["surface_pressure"])
+        ds["air_pressure"].attrs["units"] = "Pa"
+        ds["air_pressure"].attrs["long_name"] = "Air pressure"
+
+        # calculate virtual temperature (t_virtual)
+        # the temperature at which dry air would have the same density
+        # as the moist air at a given pressure
+        ds["t_virtual"] = ds["t"] * (1 + ds["q"] * ((constants.R_v / constants.R_d) - 1))
+        ds["t_virtual"].attrs["units"] = "K"
+        ds["t_virtual"].attrs["long_name"] = "Virtual Temperature"
+
+        # calculate geopotential
+        if "z" in self.variable_shortnames:
+            ds["z"] = self._calc_geopotential(ds)
+
+        # take the mean of the air pressure to create quasi-gridded level coordinate
+        ds = ds.assign_coords(
+            {"level": ("lev", (ds["air_pressure"].mean(dim=["time", "lat", "lon"]) / 100).values)}
+        )
+        ds = ds.swap_dims({"lev": "level"})
+        ds = ds.drop_vars(names=["lev"])
+
+        # rename dimensions
+        ds = ds.rename({"lat": "latitude", "lon": "longitude"})
+
+        # downselect variables
+        ds = ds[self.variable_shortnames]
+
+        # TODO: fix this correctly
+        if "level" not in ds.dims:
+            ds = ds.expand_dims({"level": [-1]})
+
+        # harmonize variable names
+        ds = met.standardize_variables(ds, self.variables)
+
+        self.set_metadata(ds)
+        return met.MetDataset(ds, **kwargs)
+
+    @overrides
+    def set_metadata(self, ds: xr.Dataset | met.MetDataset) -> None:
+        ds.attrs.update(
+            provider="ECMWF",
+            dataset="IFS",
+            product="forecast",
+        )
+
+    @overrides
+    def download_dataset(self, times: list[datetime]) -> None:
+        raise NotImplementedError("IFS download is not supported")
+
+    @overrides
+    def cache_dataset(self, dataset: xr.Dataset) -> None:
+        raise NotImplementedError("IFS dataset caching not supported")
+
+    @overrides
+    def create_cachepath(self, t: datetime) -> str:
+        raise NotImplementedError("IFS download is not supported")
+
+    def _open_ifs_dataset(self, **xr_kwargs: Any) -> xr.Dataset:
+        # get the path to each IFS file for each forecast date
+        date_str = self.forecast_date.strftime("%Y%m%d")
+        path_full = f"{self.forecast_path}/FC_{date_str}_00_144.nc"
+        path_fl = f"{self.forecast_path}/FC_{date_str}_00_144_fl.nc"
+        path_surface = f"{self.forecast_path}/FC_{date_str}_00_144_sur.nc"
+        path_rad = f"{self.forecast_path}/FC_{date_str}_00_144_rad.nc"
+
+        # load each dataset
+        LOG.debug(f"Loading IFS forecast date {date_str}")
+
+        # load each dataset
+        xr_kwargs.setdefault("chunks", metsource.DEFAULT_CHUNKS)
+        xr_kwargs.setdefault("engine", metsource.NETCDF_ENGINE)
+        ds_full = xr.open_dataset(path_full, **xr_kwargs)
+        ds_fl = xr.open_dataset(path_fl, **xr_kwargs)
+        ds_surface = xr.open_dataset(path_surface, **xr_kwargs)
+        ds_rad = xr.open_dataset(path_rad, **xr_kwargs)
+
+        # calculate surface pressure from ln(surface pressure) var, squeeze out "lev" dim
+        ds_full["surface_pressure"] = np.exp(ds_full["lnsp"]).squeeze()
+        ds_full["surface_pressure"].attrs["units"] = "Pa"
+        ds_full["surface_pressure"].attrs["long_name"] = "Surface air pressure"
+
+        # swap dim names for consistency
+        ds_full = ds_full.drop_vars(names=["lnsp", "lev"])
+        ds_full = ds_full.rename({"lev_2": "lev"})
+
+        # drop vars so all datasets can merge
+        ds_fl = ds_fl.drop_vars(names=["hyai", "hybi", "hyam", "hybm"])
+
+        # merge all datasets using the "ds_fl" dimensions as the join keys
+        ds = xr.merge([ds_fl, ds_full, ds_surface, ds_rad], join="left")  # order matters!
+
+        return ds
+
+    def _calc_geopotential(self, ds: xr.Dataset) -> xr.DataArray:
+        warnings.warn(
+            "The geopotential calculation implementation may assume the underlying grid "
+            "starts at ground level. This may not be the case for IFS data. It may be "
+            "better to use geometric height (altitude) instead of geopotential for downstream "
+            "applications (tau cirrus, etc.).",
+            UserWarning,
+        )
+
+        # TODO: this could be done via a mapping on the "lev" dimension
+        # groupby("lev")
+
+        z_level = ds["z"].copy()
+        p_level = ds["surface_pressure"].copy()
+        geopotential = xr.zeros_like(ds["t"])
+
+        geopotential.attrs["standard_name"] = "geopotential"
+        geopotential.attrs["units"] = "m**2 s**-2"
+        geopotential.attrs["long_name"] = "Geopotential"
+
+        # iterate through level layers from the bottom up
+        for k in ds["lev"][::-1]:
+            d_log_p = np.log(p_level / ds["air_pressure"].loc[dict(lev=k)])
+
+            denom = p_level - ds["air_pressure"].loc[dict(lev=k)]
+            alpha = 1 - d_log_p * ds["air_pressure"].loc[dict(lev=k)] / denom
+
+            geopotential.loc[dict(lev=k)] = (
+                z_level + ds["t_virtual"].loc[dict(lev=k)] * alpha * constants.R_d
+            )
+
+            # Update values for next loop
+            z_level = geopotential.loc[dict(lev=k)].copy()
+            p_level = ds["air_pressure"].loc[dict(lev=k)].copy()
+
+        return geopotential

pycontrails/datalib/ecmwf/model_levels.py

@@ -0,0 +1,79 @@
+"""Utilities for working with ECMWF model-level data.
+
+This module requires the following additional dependency:
+
+- `lxml <https://lxml.de/>`_
+"""
+
+import pathlib
+
+import pandas as pd
+
+from pycontrails.physics import units
+from pycontrails.utils import dependencies
+
+_path_to_static = pathlib.Path(__file__).parent / "static"
+MODEL_LEVELS_PATH = _path_to_static / "model_level_dataframe_v20240418.csv"
+
+
+def pressure_levels_at_model_levels(alt_ft_min: float, alt_ft_max: float) -> list[int]:
+    """Return the pressure levels at each model level assuming a constant surface pressure.
+
+    The pressure levels are rounded to the nearest hPa.
+
+    Parameters
+    ----------
+    alt_ft_min : float
+        Minimum altitude, [:math:`ft`].
+    alt_ft_max : float
+        Maximum altitude, [:math:`ft`].
+
+    Returns
+    -------
+    list[int]
+        List of pressure levels, [:math:`hPa`].
+    """
+    df = pd.read_csv(MODEL_LEVELS_PATH)
+    alt_m_min = units.ft_to_m(alt_ft_min)
+    alt_m_max = units.ft_to_m(alt_ft_max)
+    filt = df["Geometric Altitude [m]"].between(alt_m_min, alt_m_max)
+    return df.loc[filt, "pf [hPa]"].round().astype(int).tolist()
+
+
+def _cache_model_level_dataframe() -> pd.DataFrame:
+    """Regenerate static model level data file.
+
+    Read the ERA5 model level definitions published by ECMWF
+    and cache it in a static file for use by this module.
+    This should only be used by model developers, and only if ECMWF model
+    level definitions change. ``MODEL_LEVEL_PATH`` must be manually
+    updated to use newly-cached files.
+
+    Requires the lxml package to be installed.
+    """
+    import os
+    from datetime import datetime
+
+    url = "https://confluence.ecmwf.int/display/UDOC/L137+model+level+definitions"
+    try:
+        df = pd.read_html(url, na_values="-", index_col="n")[0]
+        today = datetime.now()
+        new_file_path = _path_to_static / f"model_level_dataframe_v{today.strftime('%Y%m%d')}.csv"
+        if os.path.exists(new_file_path):
+            msg = f"Static file already exists at {new_file_path}"
+            raise ValueError(msg)
+        df.to_csv(new_file_path)
+
+    except ImportError as exc:
+        if "lxml" in exc.msg:
+            dependencies.raise_module_not_found_error(
+                "model_level_utils._read_model_level_dataframe function",
+                package_name="lxml",
+                module_not_found_error=exc,
+                extra=(
+                    "Alternatively, if instantiating a model-level ECMWF datalib, you can provide "
+                    "the 'pressure_levels' parameter directly to avoid the need to read the "
+                    "ECMWF model level definitions."
+                ),
+            )
+        raise

pycontrails/datalib/ecmwf/static/model_level_dataframe_v20240418.csv

@@ -0,0 +1,139 @@
+n,a [Pa],b,ph [hPa],pf [hPa],Geopotential Altitude [m],Geometric Altitude [m],Temperature [K],Density [kg/m^3]
+0,0.0,0.0,0.0,,,,,
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