pycistem 0.7__py3-none-any.whl

pycistem/__init__.py

@@ -0,0 +1,9 @@
+__version__ = "0.7"
+
+#from . import core
+from pycistem import database, programs, utils
+from pycistem.config import set_cistem_path
+
+
+
+

pycistem/config.py

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+from pathlib import Path
+
+import appdirs
+import yaml
+
+config = {
+    "CISTEM_PATH": "/usr/local/bin/"
+}
+config_path = Path(appdirs.user_config_dir("pycistem","cistem")) / "config.yaml"
+if config_path.exists():
+    with open(config_path) as fp:
+        config_file = yaml.safe_load(fp)
+        if "CISTEM_PATH" in config:
+            config["CISTEM_PATH"] = config_file["CISTEM_PATH"]
+
+def set_cistem_path(path):
+    config["CISTEM_PATH"] = path
+    config_path.parent.mkdir(parents=True,exist_ok=True)
+    with open(config_path,"w") as fp:
+        yaml.dump(config,fp)

pycistem/core/__init__.py

@@ -0,0 +1,11 @@
+try:
+    from pycistem.core.core import *
+except ImportError:
+    import warnings
+    warnings.warn(
+        "pycistem.core C++ extension is not available. "
+        "Functionality requiring core (EulerSearch, ParameterMap, Project, etc.) will raise ImportError. "
+        "To build with core support, ensure cisTEM, wxWidgets, and FFTW are installed, then reinstall pycistem from source.",
+        ImportWarning,
+        stacklevel=2,
+    )