pychnosz 1.1.1__cp311-cp311-macosx_10_13_x86_64.whl

pychnosz/utils/expression.py

@@ -0,0 +1,1074 @@
+"""
+Expression utilities for formatted labels and text.
+
+This module provides Python equivalents of the R functions in util.expression.R:
+- ratlab(): Create formatted text for activity ratios
+- expr_species(): Format chemical formula for display
+- syslab(): Create formatted text for thermodynamic systems
+
+Author: CHNOSZ Python port
+"""
+
+import re
+from typing import Optional
+from .formula import makeup
+
+# Optional imports for ratlab_html
+try:
+    from wormutils import chemlabel
+    from chemparse import parse_formula
+    _HTML_DEPS_AVAILABLE = True
+except ImportError:
+    _HTML_DEPS_AVAILABLE = False
+
+
+def ratlab(top: str = "K+", bottom: str = "H+", molality: bool = False,
+           reverse_charge: bool = False) -> str:
+    """
+    Create formatted text label for activity ratio.
+
+    This function generates a LaTeX-formatted string suitable for use as
+    axis labels in matplotlib plots, showing the ratio of activities of
+    two ions raised to appropriate powers based on their charges.
+
+    Parameters
+    ----------
+    top : str, default "K+"
+        Chemical formula for the numerator ion
+    bottom : str, default "H+"
+        Chemical formula for the denominator ion
+    molality : bool, default False
+        If True, use 'm' (molality) instead of 'a' (activity)
+    reverse_charge : bool, default False
+        If True, reverse charge order in formatting (e.g., "Fe+3" becomes "Fe^{3+}")
+        If False, keep original order (e.g., "Fe+3" becomes "Fe^{+3}")
+
+    Returns
+    -------
+    str
+        LaTeX-formatted string for the activity ratio label
+
+    Examples
+    --------
+    >>> ratlab("K+", "H+")
+    'log($a_{K^{+}}$ / $a_{H^{+}}$)'
+
+    >>> ratlab("Ca+2", "H+")
+    'log($a_{Ca^{+2}}$ / $a_{H^{+}}^{2}$)'
+
+    >>> ratlab("Ca+2", "H+", reverse_charge=True)
+    'log($a_{Ca^{2+}}$ / $a_{H^{+}}^{2}$)'
+
+    >>> ratlab("Mg+2", "Ca+2")
+    'log($a_{Mg^{+2}}$ / $a_{Ca^{+2}}$)'
+
+    Notes
+    -----
+    The exponents are determined by the charges of the ions to maintain
+    charge balance in the ratio. For example, for Ca+2/H+, the H+ term
+    is squared because Ca has a +2 charge.
+
+    The output format is compatible with matplotlib's LaTeX rendering.
+    In R CHNOSZ, this uses plotmath expressions; here we use LaTeX strings
+    that matplotlib can render.
+    """
+    # Get the charges of the ions
+    makeup_top = makeup(top)
+    makeup_bottom = makeup(bottom)
+
+    Z_top = makeup_top.get('Z', 0)
+    Z_bottom = makeup_bottom.get('Z', 0)
+
+    # The exponents for charge balance
+    # If top has charge +2 and bottom has +1, bottom gets exponent 2
+    exp_bottom = abs(Z_top)
+    exp_top = abs(Z_bottom)
+
+    # Format exponents (don't show if = 1)
+    exp_top_str = "" if exp_top == 1 else f"^{{{int(exp_top)}}}"
+    exp_bottom_str = "" if exp_bottom == 1 else f"^{{{int(exp_bottom)}}}"
+
+    # Format the ion formulas for display
+    top_formatted = _format_species_latex(top, reverse_charge=reverse_charge)
+    bottom_formatted = _format_species_latex(bottom, reverse_charge=reverse_charge)
+
+    # Choose activity or molality symbol
+    a = "m" if molality else "a"
+
+    # Build the expression
+    # Format: log(a_top^exp / a_bottom^exp)
+    numerator = f"${a}_{{{top_formatted}}}{exp_top_str}$"
+    denominator = f"${a}_{{{bottom_formatted}}}{exp_bottom_str}$"
+
+    label = f"log({numerator} / {denominator})"
+
+    return label
+
+
+def ratlab_html(top: str = "K+", bottom: str = "H+", molality: bool = False) -> str:
+    """
+    Create HTML-formatted text label for activity ratio (for Plotly/HTML rendering).
+
+    This function generates an HTML-formatted string suitable for use with
+    Plotly interactive plots, showing the ratio of activities of two ions
+    raised to appropriate powers based on their charges.
+
+    This is a companion function to ratlab() which produces LaTeX format for
+    matplotlib. Use ratlab_html() when creating labels for diagram(..., interactive=True).
+
+    Parameters
+    ----------
+    top : str, default "K+"
+        Chemical formula for the numerator ion
+    bottom : str, default "H+"
+        Chemical formula for the denominator ion
+    molality : bool, default False
+        If True, use 'm' (molality) instead of 'a' (activity)
+
+    Returns
+    -------
+    str
+        HTML-formatted string for the activity ratio label
+
+    Examples
+    --------
+    >>> ratlab_html("K+", "H+")
+    'log(a<sub>K<sup>+</sup></sub>/a<sub>H<sup>+</sup></sub>)'
+
+    >>> ratlab_html("Ca+2", "H+")
+    'log(a<sub>Ca<sup>2+</sup></sub>/a<sup>2</sup><sub>H<sup>+</sup></sub>)'
+
+    >>> ratlab_html("Mg+2", "Ca+2")
+    'log(a<sub>Mg<sup>2+</sup></sub>/a<sub>Ca<sup>2+</sup></sub>)'
+
+    Notes
+    -----
+    The exponents are determined by the charges of the ions to maintain
+    charge balance in the ratio. For example, for Ca+2/H+, the H+ term
+    is squared because Ca has a +2 charge.
+
+    The output format uses HTML tags (<sub>, <sup>) compatible with Plotly.
+    For matplotlib plots with LaTeX rendering, use ratlab() instead.
+
+    Requires: WORMutils (for chemlabel) and chemparse (for parse_formula)
+
+    See Also
+    --------
+    ratlab : LaTeX version for matplotlib
+    """
+    if not _HTML_DEPS_AVAILABLE:
+        raise ImportError(
+            "ratlab_html() requires 'WORMutils' and 'chemparse' packages.\n"
+            "Install with: pip install WORMutils chemparse"
+        )
+
+    # Parse the formulas to get charges
+    top_formula = parse_formula(top)
+    if "+" in top_formula.keys():
+        top_charge = top_formula["+"]
+    elif "-" in top_formula.keys():
+        top_charge = -top_formula["-"]
+    else:
+        raise ValueError("Cannot create an ion ratio involving one or more neutral species.")
+
+    bottom_formula = parse_formula(bottom)
+    if "+" in bottom_formula.keys():
+        bottom_charge = bottom_formula["+"]
+    elif "-" in bottom_formula.keys():
+        bottom_charge = -bottom_formula["-"]
+    else:
+        raise ValueError("Cannot create an ion ratio involving one or more neutral species.")
+
+    # Convert to integers if whole numbers
+    if top_charge.is_integer():
+        top_charge = int(top_charge)
+
+    if bottom_charge.is_integer():
+        bottom_charge = int(bottom_charge)
+
+    # The exponents for charge balance
+    # If top has charge +2 and bottom has +1, bottom gets exponent 2
+    exp_bottom = abs(top_charge)
+    exp_top = abs(bottom_charge)
+
+    # Format exponents as superscripts (don't show if = 1)
+    if exp_top != 1:
+        top_exp_str = "<sup>" + str(exp_top) + "</sup>"
+    else:
+        top_exp_str = ""
+
+    if exp_bottom != 1:
+        bottom_exp_str = "<sup>" + str(exp_bottom) + "</sup>"
+    else:
+        bottom_exp_str = ""
+
+    # Choose activity or molality symbol
+    if molality:
+        sym = "m"
+    else:
+        sym = "a"
+
+    # Format the chemical formulas with chemlabel
+    top_formatted = chemlabel(top)
+    bottom_formatted = chemlabel(bottom)
+
+    # Build the HTML expression
+    # Format: log(a_top^exp / a_bottom^exp)
+    return f"log({sym}{top_exp_str}<sub>{top_formatted}</sub>/{sym}{bottom_exp_str}<sub>{bottom_formatted}</sub>)"
+
+
+def _format_species_latex(formula: str, reverse_charge: bool = False) -> str:
+    """
+    Format a chemical formula for LaTeX rendering.
+
+    This converts a chemical formula like "Ca+2" to LaTeX format.
+
+    Parameters
+    ----------
+    formula : str
+        Chemical formula
+    reverse_charge : bool, default False
+        If True, reverse charge order (e.g., "Fe+3" becomes "Fe^{3+}")
+        If False, keep original order (e.g., "Fe+3" becomes "Fe^{+3}")
+
+    Returns
+    -------
+    str
+        LaTeX-formatted formula
+    """
+    # Handle charge at the end
+    # Look for patterns like +, -, +2, -2, +3, etc.
+    charge_match = re.search(r'([+-])(\d*)$', formula)
+
+    if charge_match:
+        sign = charge_match.group(1)
+        magnitude = charge_match.group(2)
+
+        # Get the base formula (without charge)
+        base = formula[:charge_match.start()]
+
+        # Format the charge
+        if magnitude == '' or magnitude == '1':
+            # Single charge: Ca+ or Ca-
+            charge_str = f"^{{{sign}}}"
+        else:
+            # Multiple charges: Ca+2 can be Ca^{+3} or Ca^{3+}
+            if reverse_charge:
+                # Reversed: magnitude first, then sign (e.g., Ca^{2+})
+                charge_str = f"^{{{magnitude}{sign}}}"
+            else:
+                # Original order: sign first, then magnitude (e.g., Ca^{+2})
+                charge_str = f"^{{{sign}{magnitude}}}"
+
+        # Add subscripts for numbers in the base formula
+        base_formatted = _add_subscripts(base)
+
+        return f"{base_formatted}{charge_str}"
+    else:
+        # No charge, just add subscripts
+        return _add_subscripts(formula)
+
+
+def _add_subscripts(formula: str) -> str:
+    """
+    Add LaTeX subscripts for numbers in a chemical formula.
+
+    Parameters
+    ----------
+    formula : str
+        Chemical formula without charge
+
+    Returns
+    -------
+    str
+        Formula with subscripts in LaTeX format
+    """
+    # Replace numbers following letters with subscripts
+    # H2O becomes H_{2}O, CO2 becomes CO_{2}
+    result = re.sub(r'([A-Z][a-z]?)(\d+)', r'\1_{\2}', formula)
+    return result
+
+
+def syslab(system: list = None, dash: str = "-") -> str:
+    """
+    Create formatted text for thermodynamic system.
+
+    This generates a label showing the components of a thermodynamic system,
+    separated by dashes (or other separator).
+
+    Parameters
+    ----------
+    system : list of str, optional
+        List of component formulas. Default: ["K2O", "Al2O3", "SiO2", "H2O"]
+    dash : str, default "-"
+        Separator between components
+
+    Returns
+    -------
+    str
+        LaTeX-formatted string for the system label
+
+    Examples
+    --------
+    >>> syslab(["K2O", "Al2O3", "SiO2", "H2O"])
+    '$K_{2}O-Al_{2}O_{3}-SiO_{2}-H_{2}O$'
+
+    >>> syslab(["CaO", "MgO", "SiO2"], dash="–")
+    '$CaO–MgO–SiO_{2}$'
+    """
+    if system is None:
+        system = ["K2O", "Al2O3", "SiO2", "H2O"]
+
+    # Format each component
+    formatted_components = []
+    for component in system:
+        formatted = _add_subscripts(component)
+        formatted_components.append(formatted)
+
+    # Join with separator
+    label = dash.join(formatted_components)
+
+    # Wrap in LaTeX math mode
+    return f"${label}$"
+
+
+def syslab_html(system: list = None, dash: str = "-") -> str:
+    """
+    Create HTML-formatted text for thermodynamic system (for Plotly).
+
+    This generates a label showing the components of a thermodynamic system,
+    separated by dashes (or other separator), using HTML formatting compatible
+    with Plotly instead of LaTeX.
+
+    Parameters
+    ----------
+    system : list of str, optional
+        List of component formulas. Default: ["K2O", "Al2O3", "SiO2", "H2O"]
+    dash : str, default "-"
+        Separator between components
+
+    Returns
+    -------
+    str
+        HTML-formatted string for the system label
+
+    Examples
+    --------
+    >>> syslab_html(["K2O", "Al2O3", "SiO2", "H2O"])
+    'K<sub>2</sub>O-Al<sub>2</sub>O<sub>3</sub>-SiO<sub>2</sub>-H<sub>2</sub>O'
+
+    >>> syslab_html(["CaO", "MgO", "SiO2"], dash="–")
+    'CaO–MgO–SiO<sub>2</sub>'
+
+    Notes
+    -----
+    Use this function instead of syslab() when creating titles for interactive
+    (Plotly) diagrams. The HTML formatting is compatible with Plotly's rendering.
+
+    Requires: WORMutils (for chemlabel)
+    """
+    if not _HTML_DEPS_AVAILABLE:
+        raise ImportError(
+            "syslab_html() requires 'WORMutils' package.\n"
+            "Install with: pip install WORMutils"
+        )
+
+    if system is None:
+        system = ["K2O", "Al2O3", "SiO2", "H2O"]
+
+    # Format each component using HTML via chemlabel
+    formatted_components = []
+    for component in system:
+        formatted = chemlabel(component)
+        formatted_components.append(formatted)
+
+    # Join with separator (no HTML wrapper needed)
+    label = dash.join(formatted_components)
+
+    return label
+
+
+def expr_species(formula: str, state: Optional[str] = None, use_state: bool = False) -> str:
+    """
+    Format a chemical species formula for display.
+
+    This is a simplified version that returns LaTeX-formatted strings
+    suitable for matplotlib. The R version returns plotmath expressions.
+
+    Parameters
+    ----------
+    formula : str
+        Chemical formula
+    state : str, optional
+        Physical state (aq, cr, gas, liq)
+    use_state : bool, default False
+        Whether to include state in the formatted output
+
+    Returns
+    -------
+    str
+        LaTeX-formatted formula string
+
+    Examples
+    --------
+    >>> expr_species("H2O")
+    '$H_{2}O$'
+
+    >>> expr_species("Ca+2")
+    '$Ca^{2+}$'
+
+    >>> expr_species("SO4-2")
+    '$SO_{4}^{2-}$'
+    """
+    formatted = _format_species_latex(formula)
+
+    if use_state and state:
+        # Add state subscript
+        return f"${formatted}_{{{state}}}$"
+    else:
+        return f"${formatted}$"
+
+
+def describe_property(property: list = None, value: list = None,
+                     digits: int = 0, oneline: bool = False,
+                     ret_val: bool = False) -> list:
+    """
+    Create formatted text describing thermodynamic properties and their values.
+
+    This function generates formatted strings for displaying property-value pairs
+    in legends, typically for temperature, pressure, and other conditions.
+
+    Parameters
+    ----------
+    property : list of str
+        Property names (e.g., ["T", "P"])
+    value : list
+        Property values (e.g., [300, 1000])
+    digits : int, default 0
+        Number of decimal places to display
+    oneline : bool, default False
+        If True, combine all properties on one line (not implemented)
+    ret_val : bool, default False
+        If True, return only values with units (not property names)
+
+    Returns
+    -------
+    list of str
+        Formatted property descriptions
+
+    Examples
+    --------
+    >>> describe_property(["T", "P"], [300, 1000])
+    ['$T$ = 300 °C', '$P$ = 1000 bar']
+
+    >>> describe_property(["T"], [25], digits=1)
+    ['$T$ = 25.0 °C']
+
+    Notes
+    -----
+    This is used to create legend entries showing the conditions
+    used in thermodynamic calculations.
+    """
+    if property is None or value is None:
+        raise ValueError("property or value is None")
+
+    descriptions = []
+
+    for i in range(len(property)):
+        prop = property[i]
+        val = value[i]
+
+        # Get property symbol
+        if prop == "T":
+            prop_str = "$T$"
+            if val == "Psat" or val == "NA":
+                val_str = "$P_{sat}$"
+            else:
+                val_formatted = format(round(float(val), digits), f'.{digits}f')
+                val_str = f"{val_formatted} °C"
+        elif prop == "P":
+            prop_str = "$P$"
+            if val == "Psat" or val == "NA":
+                val_str = "$P_{sat}$"
+            else:
+                val_formatted = format(round(float(val), digits), f'.{digits}f')
+                val_str = f"{val_formatted} bar"
+        elif prop == "pH":
+            prop_str = "pH"
+            val_formatted = format(round(float(val), digits), f'.{digits}f')
+            val_str = val_formatted
+        elif prop == "Eh":
+            prop_str = "Eh"
+            val_formatted = format(round(float(val), digits), f'.{digits}f')
+            val_str = f"{val_formatted} V"
+        elif prop == "IS":
+            prop_str = "$IS$"
+            val_formatted = format(round(float(val), digits), f'.{digits}f')
+            val_str = val_formatted
+        else:
+            prop_str = f"${prop}$"
+            val_formatted = format(round(float(val), digits), f'.{digits}f')
+            val_str = val_formatted
+
+        if ret_val:
+            descriptions.append(val_str)
+        else:
+            descriptions.append(f"{prop_str} = {val_str}")
+
+    return descriptions
+
+
+def describe_basis(ibasis: list = None, digits: int = 1,
+                  oneline: bool = False, molality: bool = False,
+                  use_pH: bool = True) -> list:
+    """
+    Create formatted text describing basis species activities/fugacities.
+
+    This function generates formatted strings for displaying the chemical
+    activities or fugacities of basis species, typically for plot legends.
+
+    Parameters
+    ----------
+    ibasis : list of int, optional
+        Indices of basis species to describe (1-based). If None, describes all.
+    digits : int, default 1
+        Number of decimal places to display
+    oneline : bool, default False
+        If True, combine all species on one line (not fully implemented)
+    molality : bool, default False
+        If True, use molality (m) instead of activity (a)
+    use_pH : bool, default True
+        If True, display H+ as pH instead of log a_H+
+
+    Returns
+    -------
+    list of str
+        Formatted basis species descriptions
+
+    Examples
+    --------
+    >>> from pychnosz.core.basis import basis
+    >>> basis(["H2O", "H+", "O2"], [-10, -7, -80])
+    >>> describe_basis([2, 3])
+    ['pH = 7.0', 'log $f_{O_2}$ = -80.0']
+
+    >>> describe_basis()  # All basis species
+    ['log $a_{H_2O}$ = -10.0', 'pH = 7.0', 'log $f_{O_2}$ = -80.0']
+
+    Notes
+    -----
+    This is used to create legend entries showing the basis species
+    activities used in thermodynamic calculations.
+    """
+    from ..core.basis import get_basis
+
+    basis_df = get_basis()
+    if basis_df is None:
+        raise RuntimeError("Basis species are not defined")
+
+    # Default to all basis species
+    if ibasis is None:
+        ibasis = list(range(1, len(basis_df) + 1))
+
+    # Convert to 0-based indexing
+    ibasis_0 = [i - 1 for i in ibasis]
+
+    descriptions = []
+
+    for i in ibasis_0:
+        species_name = basis_df.index[i]
+        state = basis_df.iloc[i]['state']
+        logact = basis_df.iloc[i]['logact']
+
+        # Check if logact is numeric
+        try:
+            logact_val = float(logact)
+            is_numeric = True
+        except (ValueError, TypeError):
+            is_numeric = False
+
+        if is_numeric:
+            # Handle H+ specially with pH
+            if species_name == "H+" and use_pH:
+                pH_val = -logact_val
+                val_formatted = format(round(pH_val, digits), f'.{digits}f')
+                descriptions.append(f"pH = {val_formatted}")
+            else:
+                # Format the activity/fugacity
+                val_formatted = format(round(logact_val, digits), f'.{digits}f')
+
+                # Determine if it's activity or fugacity based on state
+                if state in ['aq', 'liq', 'cr']:
+                    a_or_f = "a" if not molality else "m"
+                else:
+                    a_or_f = "f"
+
+                # Format the species name
+                species_formatted = _format_species_latex(species_name)
+
+                descriptions.append(f"log ${a_or_f}_{{{species_formatted}}}$ = {val_formatted}")
+        else:
+            # Non-numeric value (buffer)
+            if species_name == "H+" and use_pH:
+                descriptions.append(f"pH = {logact}")
+            else:
+                # For buffers, just show the buffer name
+                if state in ['aq', 'liq', 'cr']:
+                    a_or_f = "a" if not molality else "m"
+                else:
+                    a_or_f = "f"
+
+                species_formatted = _format_species_latex(species_name)
+                descriptions.append(f"${a_or_f}_{{{species_formatted}}}$ = {logact}")
+
+    return descriptions
+
+
+def describe_property_html(property: list = None, value: list = None,
+                           digits: int = 0, oneline: bool = False,
+                           ret_val: bool = False) -> list:
+    """
+    Create HTML-formatted text describing thermodynamic properties (for Plotly).
+
+    This function generates HTML-formatted strings for displaying thermodynamic
+    properties and their values, typically for plot legends in interactive diagrams.
+
+    Parameters
+    ----------
+    property : list of str
+        Property names (e.g., ["T", "P"])
+    value : list
+        Property values
+    digits : int, default 0
+        Number of decimal places to display
+    oneline : bool, default False
+        If True, format on one line (not implemented)
+    ret_val : bool, default False
+        If True, return only values without property names
+
+    Returns
+    -------
+    list of str
+        HTML-formatted property descriptions
+
+    Examples
+    --------
+    >>> describe_property_html(["T", "P"], [300, 1000])
+    ['<i>T</i> = 300 °C', '<i>P</i> = 1000 bar']
+
+    Notes
+    -----
+    Use this instead of describe_property() when creating legends for
+    interactive (Plotly) diagrams.
+    """
+    if property is None or value is None:
+        raise ValueError("property or value is None")
+
+    descriptions = []
+
+    for i in range(len(property)):
+        prop = property[i]
+        val = value[i]
+
+        # Get property symbol (HTML format)
+        if prop == "T":
+            prop_str = "<i>T</i>"
+            if val == "Psat" or val == "NA":
+                val_str = "<i>P</i><sub>sat</sub>"
+            else:
+                val_formatted = format(round(float(val), digits), f'.{digits}f')
+                val_str = f"{val_formatted} °C"
+        elif prop == "P":
+            prop_str = "<i>P</i>"
+            if val == "Psat" or val == "NA":
+                val_str = "<i>P</i><sub>sat</sub>"
+            else:
+                val_formatted = format(round(float(val), digits), f'.{digits}f')
+                val_str = f"{val_formatted} bar"
+        elif prop == "pH":
+            prop_str = "pH"
+            val_formatted = format(round(float(val), digits), f'.{digits}f')
+            val_str = val_formatted
+        elif prop == "Eh":
+            prop_str = "Eh"
+            val_formatted = format(round(float(val), digits), f'.{digits}f')
+            val_str = f"{val_formatted} V"
+        elif prop == "IS":
+            prop_str = "<i>IS</i>"
+            val_formatted = format(round(float(val), digits), f'.{digits}f')
+            val_str = val_formatted
+        else:
+            prop_str = f"<i>{prop}</i>"
+            val_formatted = format(round(float(val), digits), f'.{digits}f')
+            val_str = val_formatted
+
+        if ret_val:
+            descriptions.append(val_str)
+        else:
+            descriptions.append(f"{prop_str} = {val_str}")
+
+    return descriptions
+
+
+def describe_basis_html(ibasis: list = None, digits: int = 1,
+                        oneline: bool = False, molality: bool = False,
+                        use_pH: bool = True) -> list:
+    """
+    Create HTML-formatted text describing basis species (for Plotly).
+
+    This function generates HTML-formatted strings for displaying the chemical
+    activities or fugacities of basis species, typically for plot legends in
+    interactive diagrams.
+
+    Parameters
+    ----------
+    ibasis : list of int, optional
+        Indices of basis species to describe (1-based). If None, describes all.
+    digits : int, default 1
+        Number of decimal places to display
+    oneline : bool, default False
+        If True, combine all species on one line (not fully implemented)
+    molality : bool, default False
+        If True, use molality (m) instead of activity (a)
+    use_pH : bool, default True
+        If True, display H+ as pH instead of log a_H+
+
+    Returns
+    -------
+    list of str
+        HTML-formatted basis species descriptions
+
+    Examples
+    --------
+    >>> from pychnosz.core.basis import basis
+    >>> basis(["H2O", "H+", "O2"], [-10, -7, -80])
+    >>> describe_basis_html([2, 3])
+    ['pH = 7.0', 'log <i>f</i><sub>O<sub>2</sub></sub> = -80.0']
+
+    >>> describe_basis_html([4])  # CO2
+    ['log <i>f</i><sub>CO<sub>2</sub></sub> = -1.0']
+
+    Notes
+    -----
+    Use this instead of describe_basis() when creating legends for
+    interactive (Plotly) diagrams.
+    """
+    if not _HTML_DEPS_AVAILABLE:
+        raise ImportError(
+            "describe_basis_html() requires 'WORMutils' package.\n"
+            "Install with: pip install WORMutils"
+        )
+
+    from ..core.basis import get_basis
+
+    basis_df = get_basis()
+    if basis_df is None:
+        raise RuntimeError("Basis species are not defined")
+
+    # Default to all basis species
+    if ibasis is None:
+        ibasis = list(range(1, len(basis_df) + 1))
+
+    # Convert to 0-based indexing
+    ibasis_0 = [i - 1 for i in ibasis]
+
+    descriptions = []
+
+    for i in ibasis_0:
+        species_name = basis_df.index[i]
+        state = basis_df.iloc[i]['state']
+        logact = basis_df.iloc[i]['logact']
+
+        # Check if logact is numeric
+        try:
+            logact_val = float(logact)
+            is_numeric = True
+        except (ValueError, TypeError):
+            is_numeric = False
+
+        if is_numeric:
+            # Handle H+ specially with pH
+            if species_name == "H+" and use_pH:
+                pH_val = -logact_val
+                val_formatted = format(round(pH_val, digits), f'.{digits}f')
+                descriptions.append(f"pH = {val_formatted}")
+            else:
+                # Format the activity/fugacity
+                val_formatted = format(round(logact_val, digits), f'.{digits}f')
+
+                # Determine if it's activity or fugacity based on state
+                if state in ['aq', 'liq', 'cr']:
+                    a_or_f = "a" if not molality else "m"
+                else:
+                    a_or_f = "f"
+
+                # Format the species name using HTML
+                species_formatted = chemlabel(species_name)
+
+                descriptions.append(f"log <i>{a_or_f}</i><sub>{species_formatted}</sub> = {val_formatted}")
+        else:
+            # Non-numeric value (buffer)
+            if species_name == "H+" and use_pH:
+                descriptions.append(f"pH = {logact}")
+            else:
+                # For buffers, just show the buffer name
+                if state in ['aq', 'liq', 'cr']:
+                    a_or_f = "a" if not molality else "m"
+                else:
+                    a_or_f = "f"
+
+                species_formatted = chemlabel(species_name)
+                descriptions.append(f"<i>{a_or_f}</i><sub>{species_formatted}</sub> = {logact}")
+
+    return descriptions
+
+
+def add_legend(ax, labels: list = None, loc: str = 'best',
+              frameon: bool = False, fontsize: float = 9, **kwargs):
+    """
+    Add a legend to a diagram with matplotlib or Plotly formatting.
+
+    This is a convenience function that adds a legend with sensible
+    defaults matching R CHNOSZ legend styling. Works with both matplotlib
+    and Plotly figures.
+
+    Parameters
+    ----------
+    ax : matplotlib.axes.Axes or plotly.graph_objs.Figure
+        Axes/Figure object to add legend to. For interactive diagrams,
+        pass the figure from d['fig'] or d['ax'].
+    labels : list of str
+        Legend labels (can be from describe_property, describe_basis, etc.)
+    loc : str, default 'best'
+        Legend location. Options: 'best', 'upper left', 'upper right',
+        'lower left', 'lower right', 'right', 'center left', 'center right',
+        'lower center', 'upper center', 'center'
+        For Plotly: 'best' defaults to 'lower right'
+    frameon : bool, default False
+        Whether to draw a frame around the legend (R bty="n" equivalent)
+    fontsize : float, default 9
+        Font size for legend text (R cex=0.9 equivalent)
+    **kwargs
+        Additional arguments passed to matplotlib legend() or Plotly annotation
+
+    Returns
+    -------
+    matplotlib.legend.Legend or plotly.graph_objs.Figure
+        The legend object (matplotlib) or the figure (Plotly)
+
+    Examples
+    --------
+    >>> from pychnosz.utils.expression import add_legend, describe_property
+    >>> # Matplotlib diagram with plot_it=False
+    >>> d1 = diagram(a, interactive=False, plot_it=False)
+    >>> dprop = describe_property(["T", "P"], [300, 1000])
+    >>> add_legend(d1['ax'], dprop, loc='lower right')
+    >>> # Display the figure in Jupyter:
+    >>> from IPython.display import display
+    >>> display(d1['fig'])
+    >>> # Or save it:
+    >>> d1['fig'].savefig('diagram.png')
+
+    >>> # Plotly diagram
+    >>> d1 = diagram(a, interactive=True, plot_it=False)
+    >>> dprop = describe_property(["T", "P"], [300, 1000])
+    >>> add_legend(d1['fig'], dprop, loc='lower right')
+    >>> d1['fig'].show()
+
+    Notes
+    -----
+    Common R legend locations and their matplotlib equivalents:
+    - "bottomright" → "lower right"
+    - "topleft" → "upper left"
+    - "topright" → "upper right"
+    - "bottomleft" → "lower left"
+
+    When using plot_it=False, you need to explicitly display the figure after
+    adding legends. In Jupyter notebooks, use display(d['fig']) or d['fig'].show()
+    for Plotly diagrams. Outside Jupyter, use plt.show() or save with d['fig'].savefig().
+    """
+    if labels is None:
+        raise ValueError("labels must be provided")
+
+    # Detect if this is a Plotly figure
+    is_plotly = _is_plotly_figure(ax)
+
+    if is_plotly:
+        return _add_plotly_legend(ax, labels, loc, frameon, fontsize, **kwargs)
+    else:
+        return _add_matplotlib_legend(ax, labels, loc, frameon, fontsize, **kwargs)
+
+
+def _is_plotly_figure(fig):
+    """Check if object is a Plotly figure."""
+    return hasattr(fig, 'add_annotation') and hasattr(fig, 'update_layout')
+
+
+def _add_matplotlib_legend(ax, labels, loc, frameon, fontsize, **kwargs):
+    """Add legend to matplotlib axes."""
+    # Handle R-style location names
+    loc_map = {
+        'bottomright': 'lower right',
+        'bottomleft': 'lower left',
+        'topleft': 'upper left',
+        'topright': 'upper right',
+        'bottom': 'lower center',
+        'top': 'upper center',
+        'left': 'center left',
+        'right': 'center right'
+    }
+
+    # Convert R-style location to matplotlib style
+    if loc.lower() in loc_map:
+        loc = loc_map[loc.lower()]
+
+    # Create legend with text-only labels (no symbols)
+    # This matches R's legend behavior when just providing character vectors
+    # We need to create invisible handles for matplotlib to work properly
+    from matplotlib.patches import Rectangle
+
+    # Create invisible (alpha=0) dummy handles for each label
+    handles = [Rectangle((0, 0), 1, 1, fc="white", ec="white", alpha=0)
+               for _ in labels]
+
+    # Create legend with invisible handles and no spacing
+    legend = ax.legend(handles, labels, loc=loc, frameon=frameon,
+                      fontsize=fontsize, handlelength=0, handletextpad=0,
+                      **kwargs)
+
+    return legend
+
+
+def _add_plotly_legend(fig, labels, loc, frameon, fontsize, **kwargs):
+    """Add legend-style annotation to Plotly figure."""
+    # Handle R-style location names and map to Plotly coordinates
+    loc_map = {
+        'best': 'lower right',
+        'bottomright': 'lower right',
+        'bottomleft': 'lower left',
+        'topleft': 'upper left',
+        'topright': 'upper right',
+        'bottom': 'lower center',
+        'top': 'upper center',
+        'left': 'center left',
+        'right': 'center right',
+        'lower right': 'lower right',
+        'lower left': 'lower left',
+        'upper left': 'upper left',
+        'upper right': 'upper right',
+        'lower center': 'lower center',
+        'upper center': 'upper center',
+        'center left': 'center left',
+        'center right': 'center right',
+        'center': 'center'
+    }
+
+    # Normalize location
+    loc_normalized = loc_map.get(loc.lower(), 'lower right')
+
+    # Map to Plotly anchor and position coordinates
+    # Format: (x, y, xanchor, yanchor)
+    plotly_positions = {
+        'upper left': (0.02, 0.98, 'left', 'top'),
+        'upper right': (0.98, 0.98, 'right', 'top'),
+        'lower left': (0.02, 0.02, 'left', 'bottom'),
+        'lower right': (0.98, 0.02, 'right', 'bottom'),
+        'upper center': (0.5, 0.98, 'center', 'top'),
+        'lower center': (0.5, 0.02, 'center', 'bottom'),
+        'center left': (0.02, 0.5, 'left', 'middle'),
+        'center right': (0.98, 0.5, 'right', 'middle'),
+        'center': (0.5, 0.5, 'center', 'middle')
+    }
+
+    x, y, xanchor, yanchor = plotly_positions[loc_normalized]
+
+    # Build legend text
+    legend_text = '<br>'.join(labels)
+
+    # Add annotation as legend
+    fig.add_annotation(
+        x=x,
+        y=y,
+        xref='paper',
+        yref='paper',
+        text=legend_text,
+        showarrow=False,
+        xanchor=xanchor,
+        yanchor=yanchor,
+        font=dict(size=fontsize),
+        bgcolor='rgba(255, 255, 255, 0.8)' if not frameon else 'rgba(255, 255, 255, 1)',
+        bordercolor='black' if frameon else 'rgba(0, 0, 0, 0)',
+        borderwidth=1 if frameon else 0,
+        borderpad=4,
+        align='left'
+    )
+
+    return fig
+
+
+def set_title(ax_or_fig, title: str, fontsize: float = 12, **kwargs):
+    """
+    Set title on a matplotlib axes or Plotly figure.
+
+    This function provides a unified interface for setting titles on both
+    matplotlib and Plotly plots, allowing seamless switching between
+    interactive=True and interactive=False.
+
+    Parameters
+    ----------
+    ax_or_fig : matplotlib.axes.Axes or plotly.graph_objs.Figure
+        Axes or Figure object to set title on
+    title : str
+        The title text
+    fontsize : float, default 12
+        Font size for the title
+    **kwargs
+        Additional arguments passed to matplotlib set_title() or Plotly update_layout()
+
+    Returns
+    -------
+    matplotlib.text.Text or plotly.graph_objs.Figure
+        The title object (matplotlib) or the figure (Plotly)
+
+    Examples
+    --------
+    >>> from pychnosz.utils.expression import set_title, syslab
+    >>> # Matplotlib diagram
+    >>> d1 = diagram(a, interactive=False, plot_it=False)
+    >>> title_text = syslab(["H2O", "CO2", "CaO", "MgO", "SiO2"])
+    >>> set_title(d1['ax'], title_text, fontsize=12)
+    >>> # Display the figure in Jupyter:
+    >>> from IPython.display import display
+    >>> display(d1['fig'])
+
+    >>> # Plotly diagram
+    >>> d1 = diagram(a, interactive=True, plot_it=False)
+    >>> title_text = syslab_html(["H2O", "CO2", "CaO", "MgO", "SiO2"])
+    >>> set_title(d1['ax'], title_text, fontsize=12)
+    >>> d1['fig'].show()
+
+    Notes
+    -----
+    When using plot_it=False, you need to explicitly display the figure after
+    setting the title. In Jupyter notebooks, use display(d['fig']) or d['fig'].show()
+    for Plotly diagrams. Outside Jupyter, use plt.show() or save with d['fig'].savefig().
+    """
+    is_plotly = _is_plotly_figure(ax_or_fig)
+
+    if is_plotly:
+        # Plotly figure
+        title_dict = {'text': title, 'x': 0.5, 'xanchor': 'center'}
+        if fontsize:
+            title_dict['font'] = {'size': fontsize}
+        ax_or_fig.update_layout(title=title_dict, **kwargs)
+        return ax_or_fig
+    else:
+        # Matplotlib axes
+        return ax_or_fig.set_title(title, fontsize=fontsize, **kwargs)
+
+
+# Export main functions
+__all__ = ['ratlab', 'ratlab_html', 'expr_species', 'syslab', 'syslab_html',
+           'describe_property', 'describe_property_html',
+           'describe_basis', 'describe_basis_html',
+           'add_legend', 'set_title']