pychnosz 1.1.12__cp310-cp310-macosx_15_0_x86_64.whl

pychnosz/data/extdata/protein/rubisco.fasta

@@ -0,0 +1,239 @@
+>tr|A0B9K9|A0B9K9_METTP Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1616 PE=3 SV=1
+MMQRDVVARYRVETDLPMRKAAEAIAAEQSTGTWTEVRGAESDLAASVLSIDGNTVEIEF
+PVELFEPGNIPQYLSVIAGNLFGLEALKKVRLVDVDFPESLVRAHSGPKFGIEEARRIID
+AYNRPLVGTIVKPKVGLNPSQTAEVAGAAVRGGLDLVKDDETLTDQKFCPMERRVEEVMA
+EFDRVESETGKKAFYAVNVTTGADTILERAERAIDRGANMLMVDVLTAGFSALEALARGV
+DLPIHVHRTMHGAMTRDRAHGISMLVIAKLVRMAGGTNLHTGSYVGKMASDIEENDQCRD
+ALREDWYGLKRVFPVASGGIHPGKVAGNLDGYGIDCIVQAGGGVHGHPDGTTAGARAMVQ
+AVEAWLSGIPVMEYAERHKELKRALERWGV
+>tr|A1RZJ5|A1RZJ5_THEPD Ribulose 1,5-bisphosphate carboxylase large subunit OS=Thermofilum pendens (strain Hrk 5) GN=Tpen_1227 PE=3 SV=1
+MPEEFEPYGEFVVKSYLPDPDKDVIVTFRVTPSEGFTIEDAAGGVAAESSVGTWTTLYQW
+YDKSRIDRLKGKAYYMESLGDGSYILRVAYPVELFEEGNMPAFLASVAGNIFGMRRVRSL
+RVEDIYLPEAFLKHFKGPSQGVEGVRGKLKIWGRPIIGTVPKPKVGYSPEEVEKLAYEIL
+VGGMDFVKDDENLAGPSYCRFEERAKAIMKAIDRAEKETGERKAWLANITADVREMERRL
+KLVAELGNTHVMVDVVIAGWSSLTYVRDLAADYKLAIHGHRAFHAAFTRNPYHGVSMFTL
+AKLYRIIGVDQLHVGTPEVGKLEAKAVDVIRMARLLREQTYKPDIEDGLHMQQPFPGIKP
+AFPVSSGGLHPGTLPAVIKAMGVDTVIQVGGGVVGHPDGPRAGAAAARQAVEAYLEGVPL
+QEYAKTHRELARALEKWGQVIPV
+>tr|A3DND9|A3DND9_STAMF Ribulose bisphosphate carboxylase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rbcL PE=3 SV=1
+MPHKFEPYHSYIDKNYVPDLENDIIAVFRIKPAKGFTIEDAAGGVAAESSTGTWTTLYPW
+YNTERVRKLSGKAYYFKDLGDGSWIVRIAYPVELFEEANMPGLLASIAGNVFGMKRVEGL
+RLEDIYLPKKFLQYFKGPSKGVEGVKKIFRVTDRPIVGTVPKPKVGYSPEEVEKLAYELL
+VGGMDYIKDDENLTSPSFCRFSERAKHIMRAIDRAEKETGERKVWFANITSDIREMEKRL
+KLVADYDNPYVMVDVVVTGWSTLTYIRDLAEEYGLAIHAHRAMHAAFTRNPYHGISMYVL
+AKLYRIIGVDQLHIGTAGVGKLEGGKIDVIRYARILREKHFKPDPDDVFHIEQEMYHIKP
+AMPVSSGGLHPGNLPGVIDALGTELVLQIGGGVLGHPDGPRAGAMAVRQSLEAILKGIPL
+DEYAKTHRELARALEKWGFAKPI
+>tr|A8F7V4|A8F7V4_THELT Ribulose-bisphosphate carboxylase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=Tlet_1684 PE=3 SV=1
+MIEYETRYHFSQERFRVKYQIFEESKRAKEIAEAICVEQTIEFPIELTGNSIRENVVGKI
+EEIQNNHNSTVVTISYPVETVGNEPAQFFNVIMGNCSLFPNLKIIGLQLSPSIENIFPGP
+RYGISGLRKLLSIYNRPLLATAIKPMGLSTDQLAQMAYNLALGGVDIIKDDHGLADQPFS
+KFKDRVLKVTEAIHKANRETGFHTIYAPNITSNEQTMLKQAEFVKEAGSGALLVSPALSG
+FSSFITLRENTDLPILSHPAFLGGYLSIMDFDVLFGTIQRMIGADVVIFPNYGGRFTFSK
+EDCRKINHGLKKPFGSFKEIFPSPAGGMNIDSCGDIVSFYNKDVVLLIGGALHKAGADLT
+ENVKAFKAQVEKIHVR
+>tr|B9KXE5|B9KXE5_THERP Ribulose bisphosphate carboxylase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=trd_0132 PE=3 SV=1
+MSFVRATYYVETPLTLEAAAEALASEQSTGTFIAVPLETAELKARYRARIERIELIETRS
+RPTLPGSRPASGSYQCGFVELAFPLENMGCNLPTLMATLAGNLFELSELSAIRLVDLDLP
+DEFAQAYTGPRFGIQGTRDIAQVYDRPLIGTIIKPSVGLSPEQTAVVVRELVEAGIDFIK
+DDELMANPPHNPLPARARAVMRVIRDYADRTGKYVIYAFNISDRLEDMIRHIEILVEEGA
+RCCMVSLNWVGIAAFDYLRRNCPLIIHGHRNGWGMMTRAPGLGMDFRAYQKIWRLAGVDH
+LHVNGLANKFWEPDDSVVRSIHDMLQPLFGGYFAMPVISSGQWGGQAPDTYRRCRTIDLL
+YLAGGGIFAHPHGVAAGIRAIREAWEAAVAGISLAEYAQTHPDLAAALHHFGTARRGR
+>tr|F8IID7|F8IID7_ALIAT Ribulose-bisphosphate carboxylase OS=Alicyclobacillus acidocaldarius (strain Tc-4-1) GN=mtnW PE=3 SV=1
+MVATYRLRDRKDKLEARAEGIAVGLTIGTWTDLPAARKSEVEKHCGRVEGIRVLEERPEG
+DVVAEIDIAYPVANLNGTFASLLVTVFGKLSMDGEIRLERLQMPDSLVRQFPGPKFGVEG
+VRQRLGAYHRPLVMSIFKACAGLTLDELVEAFGEQAEGGVDLVKDDEIFFTEAYATPEDR
+VRAYAAKADEIAQRTGRRTAYAVNLTGPVHSLRERARRLADLGAGALLVNVVAYGYDVVA
+DLARDPEVHVPILAHPAVSGALYGSPNYGIAADIVLGQLMRLAGADIGIFPSMYGSVTLG
+REATDRLLQHLRAEGVHKPVLPAPSAGIYPGLVPRLYQDFGVDLVLNAGGGIHGHPGGAR
+MGGRAFFDAIWAVEHGVPLEEAAKDRPALRQALEKWGMPS
+>tr|F9ZLP0|F9ZLP0_ACICS Ribulose bisphosphate carboxylase large chain OS=Acidithiobacillus caldus (strain SM-1) GN=cbbL PE=3 SV=1
+MAGKYEAGVKEYRHTYWAPDYVPLDSDILACFKIVPQPGVDREEAAAAVAAESSTGTWTT
+VWTDLLTDMDYYKGRAYRIEDVPGDDTAFYAFIAYPIDLFEEGSVVNVFTSLVGNVFGFK
+AVRSLRLEDVRFPLHYVMTCNGPAHGIQVERDKMDKYGRPLLGCTIKPKLGLSAKNYGRA
+VYEALRGGLDFTKDDENVNSQPFMRWRDRFLFVADAIRNAEAQTGERKGHYLNVTAPSPE
+EMYERAEFAKELGMPIIMHDFLTGGFCANTGLARWCRKNGVLLHIHRAMHAVIDRNPHHG
+IHFRVLTKALRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESYIPEDRSRGIFFDQDW
+GSMPGAFAVASGGIHVWHMPALVNIFGDDSVLQFGGGTLGHPWGNAAGAAANRVALEACV
+EARNRGVEIEKEGKEVLMNAARHSPELKIALETWKEIKFEFDTVDKLDVQNR
+>tr|G8LZL2|G8LZL2_CLOCD Ribulose 1,5-bisphosphate carboxylase, large subunit OS=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) GN=Clocl_1256 PE=3 SV=1
+MFFSEYKEPKLSGERFSVIYKLSGNEKEAYEKAKDLCLEQTVEFPGELLPDGAIRDSIVG
+RIESFKKHDSMHYMATVSYAVETSSNELTQLLNVVFGNSSIKPGIRVEKLLLSDVILKNF
+KGPRFGRDGLREYLGIKNRPLLFTALKPMGLSSEALADLAYKFALGGIDLIKDDHGLSNQ
+SFSPFEERVELCVNAINKANRETGGKSVYVPNITAPFSEMVDRARKAKELGAGGLLISPG
+LAGFDAMREISEDENINLPVFSHPAFLGTFVMSNETGISHGALLGQIMRLAGADATIYPN
+FGGRFSFSREECESIAVCTSEKMGNLKPIFPCPAGGMSLGSIPESLKVYGKDVIFLVGGG
+LFRHGPNLIENCAYFRKLIENIDLKEIF
+>tr|G9FID8|G9FID8_9EUKA Ribulose bisphosphate carboxylase large chain OS=Phaeocystis antarctica GN=rbcL PE=3 SV=1
+MSQAVESRTRIKSERYESGVIPYAKMGYWDPDYAIKETDILALFRCTPQPGVDPVEAGAA
+LAGESSTATWTVVWTDLLTACDLYRAKAYRVDPVPSTPDTYFVYVAYDLDLFEEGSLANL
+TASIIGNIFGFKAVKALRLEDMRMPVALLKTYQGPACGLIVERERMDKFGRPLLGATVKP
+KLGLSGKNYGRVVFEGLKGGLDFLKDDENINSQPFMRYRERFLYSMEGVNHAAATSGEIK
+GHYLNSTAATMEDMYERAEFAVELGSVIVMIDLVIGYTAIQSMAKWCRKVDCILHLHRAG
+NSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVGKLEGDPLMIKGFYNTLLDFKSDIN
+LPCGMFFAQDWASLRKCVPVASGGIHCGQMHQLIDYLGDDVILQFGGGTIGHPDGIQAGA
+TANRVALECMVLARNEGRDYVAEGPQILRDAAKTCGPLQTALDLWKDITFNYASTDTADF
+VETATANR
+>tr|K4MAK9|K4MAK9_9EURY Ribulose bisphosphate carboxylase OS=Methanolobus psychrophilus R15 GN=Mpsy_0328 PE=3 SV=1
+MSLTEEQLVQSLNPKQQGYVDLKLADPRNGEYLLGVFHLVPEGRLNMLQTAAEVAAESST
+GTNFKVNTETPFSKVMNALVYQLDLERDLVWIAYPWRLFDRGGNVQNILTYIVGNILGMK
+EVKALKLMDVWFPPSMLEQYDGPSYTVDDMRKYLGVYNRPILGTIVKPKMGLTSAEYAEV
+CYDFWVGGGDFVKNDEPQANQDFCPYDKMVKHVKEAMDKAVKETGKKKVHSFNVSAADFD
+TMIKRCEMIVNAGFEPGSYAFLIDGITAGWMAVQTLRRRYPGVFIHFHRAGHGAFTRPEN
+PLGFSVLVLSKFARLAGASGIHTGTAGVGKMKGTPQEDVVAANGILYLRSKGHFFDQSWS
+KIPDLDKDVIALVNEDTAHHAILEDDSWRAMKKCCPIVSGGLNPIRLKPFIDVMGNVDFI
+TTMGSGVHAHPGGTQGGAKALVQACEAYLKNMDIEQYAKDHEELAQAIEYFSKASKDAM
+>tr|L0RHZ1|L0RHZ1_9DELT Ribulose bisphosphate carboxylase OS=Desulfovibrio hydrothermalis AM13 = DSM 14728 GN=cbbM PE=3 SV=1
+MSQYDQTSRYANFDLKEDQLIADGNHVLCAYIFKPAEGHGHIEVAAHFAAESSTGTNVEV
+CTTDDFTKGVDALVYEVSEAKDGDYLMKIAYPVELFDRNIIDGRAMLASFLTLCIGNNQG
+MGDVAYAKMYDFYVPRQYLELFDGPAKNIADFWRMLGRPMENGGMIVGTIVKPKLGLRPG
+PFADACYKFWLGGDFVKNDEPQGNQVFAPLKETITAVADAMKRAQDETGEAKVFSANITA
+DDPMEMIARGEFILDAFGEDASRVAFLVDGYVAGPTSITTARRNFPNQFLHYHRAGHGAV
+TSPQAKRGYTAFVLSKMSRLQGASGIHTGTMGFGKMEGEMADKNIAYMIEREEAQGPYFK
+QKWYGMKATTPMISGGMNALRLPGFFENLGHSNICQTSGGGAFGHLDGPTAGAISLRQSH
+EAWQQGVDLVEYAKAHKELARAFESFPQDADKFYPDWRKQLSL
+>tr|M9R7V1|M9R7V1_9RHOB Ribulose bisphosphate carboxylase-like protein OS=Octadecabacter antarcticus 307 GN=OAN307_c00690 PE=4 SV=1
+MTRLTATYEIESPVGVQRAAEVMAGEQSTGTFVRLASETDALRDRSAARLDHVDITGTSE
+HPALPCRLSAETYEQGRVTISWPMDNFGPSLPNILATVAGNLFELAELSAIRLVDLGIPD
+ALAKGCPGPQFGITGTRKLMGVPSGPMIGTIIKPSVGLSAEQTAALAGDLAQAGIDFIKD
+DELQGNGPACPFDGRAKLVMDVLNEAAQKAGRKVMYAFNITDEIDVMRRNIDLLESLGAT
+CAMVSLNSIGLAGLRAIRDHSPLPIHAHRNGWGLMSRSPHVGIKYLAMQKLWRLAGSDHL
+HVNGLGNKFTEGDTVVTNAARAVQAPLNGATPHAALPVFSSGQTAWQVGPSMELLGNDDF
+LFCAGGGIMSHPYGPAVGITSLRQAAAAQKAGEKVEDYAKDHPELAAALTTFKSAVNRS
+>sp|O28635|RBL_ARCFU Ribulose bisphosphate carboxylase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rbcL PE=1 SV=1
+MAEFEIYREYVDKSYEPQKDDIVAVFRITPAEGFTIEDAAGAVAAESSTGTWTSLHPWYD
+EERVKGLSAKAYDFVDLGDGSSIVRIAYPSELFEPHNMPGLLASIAGNVFGMKRVKGLRL
+EDLQLPKSFLKDFKGPSKGKEGVKKIFGVADRPIVGTVPKPKVGYSAEEVEKLAYELLSG
+GMDYIKDDENLTSPAYCRFEERAERIMKVIEKVEAETGEKKSWFANITADVREMERRLKL
+VAELGNPHVMVDVVITGWGALEYIRDLAEDYDLAIHGHRAMHAAFTRNAKHGISMFVLAK
+LYRIIGIDQLHIGTAGAGKLEGQKWDTVQNARIFSEVEYTPDEGDAFHLSQNFHHIKPAM
+PVSSGGLHPGNLEPVIDALGKEIVIQVGGGVLGHPMGAKAGAKAVRQALDAIISAIPLEE
+HAKQHPELQAALEKWGRVTPI
+>sp|O58677|RBL_PYRHO Ribulose bisphosphate carboxylase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rbcL PE=1 SV=1
+MMVLRMKVEWYLDFVDLNYEPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWK
+LPEMAKRSMAKVFYLEKHGEGYIAKIAYPLTLFEEGSLVQLFSAVAGNVFGMKALKNLRL
+LDFHPPYEYLRHFKGPQFGVQGIREFMGVKDRPLTATVPKPKMGWSVEEYAEIAYELWSG
+GIDLLKDDENFTSFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGPVNIMEKRAEM
+VANEGGQYVMIDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLALAK
+AARMIGVDQIHTGTAVGKMAGNYEEIKRINDFLLSKWEHIRPVFPVASGGLHPGLMPELI
+RLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGVDLDEKAKSSPELKKSLREVG
+LSKAKVGVQH
+>sp|P00874|RBL_MAIZE Ribulose bisphosphate carboxylase large chain OS=Zea mays GN=rbcL PE=3 SV=2
+MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQLGVPPEEAGAAVAAE
+SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGDPDQYICYVAYPLDLFEEGSVTNMFTSI
+VGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
+SAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKAQAETGEIKGHYL
+NATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTTLSHYCRDNGLLLHIHRAMHAV
+IDRQKNHGMHFRVLAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLLRDDFIEKDRSR
+GIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAAN
+RVALEACVQARNEGRDLAREGNEIIKAACKWSAELAAACEIWKEIKFDGFKAMDTI
+>sp|P0C916|RBL1A_THIFE Ribulose bisphosphate carboxylase large chain 1 OS=Thiobacillus ferrooxidans GN=cbbL1 PE=3 SV=1
+MAVKTYEAGVKDYRQTYWAPEYVPLDSDILACFKITPQPGVDREEAAAAVAAESSTGTWT
+TVWTDLLTDMDYYKGRAYRIEDVPGDDTCFYAFVAYPIDLFEEGSVVNVFTSLVGNVFGF
+KAVRALRLEDVRFPLAYVKTCNGPPHGIQVERDKMNKYGRPMLGCTIKPKLGLSAKNYGR
+AVYECLRGGLDFTKDDENVNSQPFIAWRDRFLFVADAIHTAEAETGERKGHYLNVTAPSP
+EEMYERAEFAKELNMPIIMHDFLTGGFCANTGLARWCRKNGVLLHIHRAMHAVVDRNPHH
+GIHFRVLAKALRLSGGDHLHTGTVVGKLEGDRAATQGWVDLLRESFVPEDAGRGIFFDQD
+WGSMPGVFAVASGGIHVWHMPALLAIFGDDAIFQFGGGTLGHPWGNAAGAAANRVALEAC
+VEARNEGRDLEREGKDILTNAAKDSPELKIALETWKEIKFEFDTVDKLDVVNR
+>sp|P37393|RBL_CYACA Ribulose bisphosphate carboxylase large chain OS=Cyanidium caldarium GN=rbcL PE=3 SV=2
+MAQSVQERTRLKNKRYESGVIPYAKMGYWDPNYVVKDTDILALFRVTPQPGVDPIEASAA
+VAGESSTATWTVIWCDLLTACDVYRAKAYRVDQVPNSPDQYFAYIAYDLDLFEEGSIANL
+TASIIGNVFGFKALAALRLEDMRIPIGYLKTFQGPATGVVVERERLNMFGKPFLGATVKP
+KLGLSSKNYGRVVYEGLKGGLNFLKDDENINSQPFMRWRERFLYVMEGVNRASAATGEIK
+GSYLNVTAATMEEMYNRAACAKEVGSIIIMIDLVIGYTAIQSMAIWARENNMILHLHRAG
+NSTYARQKNHGINFRVICKWMRMAGVDHIHAGTVVGKLEGDPIIVKGFYNTLLLPKLDVN
+LPQGLFFEMDWASLRKTVPVASGGIHAGQMHLLLKYLGDDVVLQFGGGTLGHPDGIQAGA
+TANRVALEAIVLARNEGRDYVNEGPQILKEAARTCGPLQTSLDLWKDISFNFTSTDTADF
+VETPTANV
+>tr|P72383|P72383_9FIRM Ribulose bisphosphate carboxylase large chain OS=Sulfobacillus acidophilus GN=cbbL PE=3 SV=2
+MTTEENKNRWAAGVTPYSKMGYWQPDYQPKDTDILCAFRFVPQEGVDPEEAAAAVAGESS
+TATWTVVWTDRLTAHEHYQAKAYRVVPVPGTDQYIAYIAYDLDLFEEGSIANLTASIIGN
+VFGFKALKSLRLEDMRIPPHYVKTFQGPAHGIVMEREYLNKYGRPLLGATVKPKLGLSAR
+NYARVVYEALRGGLDFTKDDENINSQPFMRWRDRYLFVMEAVNKATADTGEIKGHYLNVT
+AATMEDIYERADFAKQIGSPIIMIDLIVGYTAIQSIAKWARKNGVLLHLHRAGHSTYTRQ
+KTHGVSFRVIAKWMRLAGVDHIHAGTVLGKLEGDPRTTAGYYQTLRGMKYDADPTIGLYF
+EQDWASLPGVMPVASGGIHAGQMHQLIDLLGEDVVLQFGGGTFGHPHGIAAGAAANRIAC
+EAIIQARNEGRDYVNEGPEILAEAAKWSPALRAALDTWKDVTFNFESTDTPDVLPTPSF
+>tr|Q0EX22|Q0EX22_9PROT Ribulose bisphosphate carboxylase large chain OS=Mariprofundus ferrooxydans PV-1 GN=rbcL PE=3 SV=1
+MAVKTYQAGVKDYRETYWMPEYKLKDTDFLACFKITPQAGVPREEAAAAVAAESSTGTWT
+TVWTDLLTDLDYYKGRAYAIEDVPGDDEAFYAFIAYPIDLFEEGSVVNVLTSLVGNVFGF
+KAVRALRLEDVRIPLAYVMTCNGPPHGIQVERDKMNKYGRPLLGCTIKPKLGLSAKNYGR
+ACYEGLRGGLDFTKDDENVNSQPFMRWRQRFDFVMEAIHKAEAETGERKGHYLNVTAPTP
+EEMYKRAEYAKELGAPIIMHDYLTGGFTANTGLAQWCRDNGMLLHIHRAMHAVLDRNPRH
+GIHFRVLTKMLRLSGGDHLHSGTVVGKLEGDRDATLGWIDLMRDSFVKEDRSRGIMFDQD
+WGSMPGVLPVASGGIHVWHMPALVNIFGDDSVLQFGGGTLGHPWGNAAGAAANRVAVEAC
+VEARNQGRALEKEGKDILTTAAESSPELKIAMETWKEIKFEFDTVDKLDVAHK
+>tr|Q12TQ0|Q12TQ0_METBU Ribulose-1,5-bisphosphate carboxylase-oxygenase type III OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_2322 PE=3 SV=1
+MSLIYEDLVKSLDSKQQAYVDLKLPDPTNGEFLLAVFHMIPGGDLNVLQAAAEIAAESST
+GTNIKVSTETAFSRTMNARVYQLDLERELVWIAYPWRLFDRGGNVQNILTYIIGNILGMK
+EIQALKLMDIWFPPSMLEQYDGPSYTVDDMRKYLDVYDRPILGTIVKPKMGLTSAEYAEV
+CYDFWVGGGDFVKNDEPQANQDFCPYEKMVAHVKEAMDKAVKETGQKKVHSFNVSAADFD
+TMIERCEMITNAGFEPGSYAFLIDGITAGWMAVQTLRRRYPDVFLHFHRAAHGAFTRQEN
+PIGFSVLVLSKFARLAGASGIHTGTAGIGKMKGTPAEDVVAAHSIQYLKSPGHFFEQTWS
+KIMDTDKDVINLVNEDLAHHVILEDDSWRAMKKCCPIVSGGLNPVKLKPFIDVMENVDFI
+TTMGSGVHSHPGGTQSGAKALVQACDAYLQGMDIEEYAKDHKELAEAIEFYLNR
+>sp|Q2JIP3|RBL_SYNJB Ribulose bisphosphate carboxylase large chain OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=cbbL PE=3 SV=1
+MAYSATQSKSGYQAGVKDYRLTYYTPDYTPKDTDVLACFRVTPQPGVPPEEAGAAVAAES
+STGTWTTVWTDLLTDLDRYKGRCYDIEPVPGEDNQYFCFVAYPLDLFEEGSVTNMLTSIV
+GNVFGFKALKALRLEDVRIPVAYLKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLS
+AKNYGRAVYEALRGGLDFTKDDENINSQPFQRWRDRYLFVMEAVHKAQAETGEIKGHYLN
+VTAPTCEEMFKRAEFAKELGAPIIMHDYLTAGFTANTSLAKWCRDNGILLHIHRAMHAVI
+DRQKNHGIHFRVLAKCLRMSGGDHLHSGTVVGKLEGDRAITMGFVDLMRENYVEADRSRG
+IFFTQDWASMPGVMPVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPWGNAPGATANR
+VALEACIQARNEGRDLAREGNDIIREAAKWSPELAAACELWKEIKFEFKAVDTL
+>sp|Q51856|RBL_PSEHY Ribulose bisphosphate carboxylase large chain OS=Pseudomonas hydrogenothermophila GN=cbbL PE=3 SV=1
+MSQPKRYEAGVKEYRETYWEPTYVPKDSDFLAVFKIVPQPGVPREESAAAVAAESSTATW
+TTVWTDLLTDLYYYKGRAYAIEDVPGDDEAFYAFIAYPMGLFEEGSVVNVFTSLVGNVFG
+FKAVRSLRLEDVRIPLWFVTTCPGPPHGIYVERDKLNKYGRPLLGCTIKPKLGLSAKNYG
+RAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCQEAIEKAQAETGERKGHYMNVTGPT
+MEEIYKRAEFAKEIGTPIIMIDYLTVGWAATQSLSKWCRDNGMLLHVHRAMHAVIDRNPK
+HGINFRVLAKIMRLIGGDHLHSGTVVGKLEGDRAATLGWIDLMRDRYVKADRSRGIFFDQ
+DWGQMPGMFPVASGGIHVWHMPALVSIFGDDSVLQFGGGTIGHPWGNAAGACANRVALEA
+CVKARNEGLPIEKMGREILTEAAKSCPELKVAMETWKEVKFDFDTVDKLDVQHR
+>sp|Q58632|RBL_METJA Ribulose bisphosphate carboxylase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rbcL PE=1 SV=2
+MDYINLNYRPNEGDLLSCMVIKGENLEKLANEIAGESSIGTWTKVQTMKSDIYEKLRPKV
+YEIKEIGEENGYKVGLIKIAYPLYDFEINNMPGVLAGIAGNIFGMKIAKGLRILDFRFPA
+EFVKAYKGPRFGIEGVRETLKIKERPLLGTIVKPKVGLKTEEHAKVAYEAWVGGVDLVKD
+DENLTSQEFNKFEDRIYKTLEMRDKAEEETGERKAYMPNITAPYREMIRRAEIAEDAGSE
+YVMIDVVVCGFSAVQSFREEDFKFIIHAHRAMHAAMTRSRDFGISMLALAKIYRLLGVDQ
+LHIGTVVGKMEGGEKEVKAIRDEIVYDKVEADNENKFFNQDWFDIKPVFPVSSGGVHPRL
+VPKIVEILGRDLIIQAGGGVHGHPDGTRAGAKAMRAAIEAIIEGKSLEEKAEEVAELKKA
+LEYWK
+>sp|Q8DIS5|RBL_THEEB Ribulose bisphosphate carboxylase large chain OS=Thermosynechococcus elongatus (strain BP-1) GN=cbbL PE=1 SV=1
+MAYTQSKSQKVGYQAGVKDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAAE
+SSTGTWTTVWTDLLTDLDRYKGCCYDIEPLPGEDNQFIAYIAYPLDLFEEGSVTNMLTSI
+VGNVFGFKALKALRLEDLRIPVAYLKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
+SAKNYGRAVYECLRGGLDFTKDDENINSQPFQRWRDRFLFVADAIHKAQAETGEIKGHYL
+NVTAPTCEEMLKRAEFAKELEMPIIMHDFLTAGFTANTTLSKWCRDNGMLLHIHRAMHAV
+MDRQKNHGIHFRVLAKCLRMSGGDHIHTGTVVGKLEGDKAVTLGFVDLLRENYIEQDRSR
+GIYFTQDWASMPGVMAVASGGIHVWHMPALVDIFGDDAVLQFGGGTLGHPWGNAPGATAN
+RVALEACIQARNEGRDLMREGGDIIREAARWSPELAAACELWKEIKFEFEAQDTI
+>sp|Q8THG2|RBL_METAC Ribulose bisphosphate carboxylase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rbcL PE=1 SV=1
+MRRDYVDPGYSPKDTDLICEFHIEPAAGISFEEASTHMAGESSIDSWTEISTLSPELAAR
+LKPHVFYLDADTQTVRVAYSEDLFELGSVPQVLSAVAGNIFSMKIVDNLRLQDITFPKSM
+LREFEGPNFGLPGVRDIVGVKDRPLVGTIVKPKVGLTSEMHAEVAYNAFAGGCDLVKDDE
+NLTDQKFNGFEKRAELTLKIAEKAEAETGERKMYLCNITAPTCEEMIRRLHVLKDLGASY
+AMIDIVPTGWTALQTLREAAADEGLALHAHRCMHSAFTRNPRHGVSMLLVAKLCRLIGLD
+QLHIGTVVGKMHGDKDEVLSIRDECVLDTVPADPEQHVLAQDWGGLKPMFPVASGGLAPT
+MIPDLYSIFGKEVIMQFGGGIHAHPMGTAAGAAACRQALEASLEGISLQDYAKDHKELEA
+ALGKWLEK
+>sp|Q8U1P9|RBL_PYRFU Ribulose bisphosphate carboxylase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rbcL PE=3 SV=1
+MKVEWYLDFVDLDYTPGRDELIVEYYFEPNGVSPEEAAGRIASESSIGTWTTLWKMPEMA
+KRSMAKVFYLEKSGEGYIAKIAYPLTLFEEGSIVQLLSAIAGNIFGMKALKNLRLLDFHP
+PYEYLRHFKGPQYGVKGIREFMGVKERPLTATVPKPKMGWSVDEYAEIAYELWSGGIDLL
+KDDENFTSFPFNRFEERVKKLYRIRDIVEAETEERKEYLINITGSVDVMEKRAELVANEG
+GQYVMIDIIVTGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPKHGITMYAIAKLARMI
+GVDQIHTGTAVGKMAGDYEEVKRINDFLLSKWEHIREVFPVASGGLHPGLMPELIRLFGK
+DLVIQAGGGVMGHPDGPRAGAKALRDAIDAALEGVDLEEKAKSSPELKKALDKWGYLKPK
+>sp|Q9ZI34|RBL_BRAJA Ribulose bisphosphate carboxylase large chain OS=Bradyrhizobium japonicum (strain USDA 110) GN=cbbL PE=1 SV=1
+MNAHTGTVRGKERYRSGVMEYKRMGYWEPDYTPKDTDVIALFRVTPQEGVDPIEASAAVA
+GESSTATWTVVWTDRLTAAEKYRAKCHRVDPVPGTPGSYFAYIAYDLDLFEPGSIANLSA
+SIIGNVFGFKPLKALRLEDMRFPVAYVKTFQGPATGIVVERERLDKFGRPLLGATVKPKL
+GLSGRNYGRVVYEALKGGLDFTKDDENINSQPFMHWRDRFLYCIEAVNRAQAASGEVKGT
+YLNITAGTMEDMYERAEFAKELGSCIVMIDLVIGYTAIQSMAKWARRNDMILHLHRAGHS
+TYTRQKSHGVSFRVIAKWMRLAGVDHIHAGTVVGKLEGDPNTTRGYYDVCREDFNPTKLE
+HGLFFDQSWASLNKMMPVASGGIHAGQMHQLLDLLGEDVVLQFGGGTIGHPMGIAAGAIA
+NRVALEAMILARNEGRDYVHEGPEILAKAAQTCTPLKSALEVWKDVTFNYQSTDTPDFVP
+TALETV

pychnosz/data/extdata/protein/rubisco_aa.csv

@@ -0,0 +1,28 @@
+protein,organism,ref,abbrv,chains,Ala,Cys,Asp,Glu,Phe,Gly,His,Ile,Lys,Leu,Met,Asn,Pro,Gln,Arg,Ser,Thr,Val,Trp,Tyr
+tr|A0B9K9,METTP,NA,A0B9K9,1,45,3,24,32,10,39,10,19,16,30,14,10,15,8,29,15,20,39,4,8
+tr|A1RZJ5,THEPD,NA,A1RZJ5,1,44,1,22,36,16,43,11,23,27,34,12,6,27,10,28,17,18,43,6,19
+tr|A3DND9,STAMF,NA,A3DND9,1,36,1,25,33,16,41,14,32,33,36,12,10,26,5,26,17,18,33,6,23
+tr|A8F7V4,THELT,NA,A8F7V4,1,25,4,15,26,25,30,9,35,24,31,8,21,18,13,15,25,18,23,0,11
+tr|B9KXE5,THERP,NA,B9KXE5,1,50,6,21,26,16,35,12,29,6,40,12,11,24,11,36,18,20,24,6,15
+tr|F8IID7,ALIAT,NA,F8IID7,1,51,2,24,28,12,44,10,17,12,42,8,6,23,9,33,12,14,37,3,13
+tr|F9ZLP0,ACICS,NA,F9ZLP0,1,47,6,32,32,23,45,17,21,22,38,12,17,20,7,32,17,23,35,10,16
+tr|G8LZL2,CLOCD,NA,G8LZL2,1,26,6,16,33,25,38,6,26,26,42,10,19,19,4,18,32,11,20,0,11
+tr|G9FID8,9EUKA,NA,G9FID8,1,48,11,33,25,19,44,10,26,24,43,18,16,19,13,27,22,29,33,7,21
+tr|K4MAK9,9EURY,NA,K4MAK9,1,41,6,31,26,22,42,13,22,34,39,19,20,22,17,17,22,22,39,7,18
+tr|L0RHZ1,9DELT,NA,L0RHZ1,1,52,5,31,27,28,47,12,21,25,30,19,17,20,19,20,20,23,23,5,19
+tr|M9R7V1,9RHOB,NA,M9R7V1,1,55,5,23,20,12,42,11,21,14,42,13,15,24,14,22,26,25,25,4,6
+sp|O28635,ARCFU,NA,RBL,1,46,1,25,40,16,41,15,30,32,34,11,9,22,10,20,21,15,33,6,14
+sp|O58677,PYRHO,NA,RBL,1,39,0,19,39,18,40,12,24,28,39,18,12,21,8,26,17,15,32,7,16
+sp|P00874,MAIZE,NA,RBL,1,45,11,28,31,22,47,15,25,26,37,11,14,22,11,28,18,31,29,8,17
+sp|P0C916,THIFE,NA,RBL1A,1,51,8,34,32,25,44,15,19,23,37,10,17,21,7,29,13,26,37,10,15
+sp|P37393,CYACA,NA,RBL,1,48,5,26,25,19,43,8,30,24,44,15,25,20,15,26,21,28,38,8,20
+tr|P72383,9FIRM,NA,P72383,1,55,2,29,27,17,42,15,28,22,35,12,15,24,16,26,17,33,31,10,23
+tr|Q0EX22,9PROT,NA,Q0EX22,1,47,6,33,32,19,45,15,19,27,39,16,15,20,9,28,15,28,33,10,17
+tr|Q12TQ0,METBU,NA,Q12TQ0,1,42,6,34,29,22,36,14,29,29,37,19,17,20,17,16,24,24,34,7,18
+sp|Q2JIP3,SYNJB,NA,RBL,1,47,9,29,30,21,43,14,21,25,39,12,16,23,13,28,17,29,31,9,18
+sp|Q51856,PSEHY,NA,RBL,1,41,8,29,32,22,43,12,23,28,34,15,13,24,10,30,18,25,37,12,18
+sp|Q58632,METJA,NA,RBL,1,36,2,22,47,17,38,8,37,39,29,14,15,15,6,23,13,13,31,4,16
+sp|Q8DIS5,THEEB,NA,RBL,1,47,9,31,30,21,42,14,25,25,42,13,15,21,16,27,14,31,26,9,17
+sp|Q8THG2,METAC,NA,RBL,1,44,8,29,33,15,35,15,23,23,44,15,8,21,11,19,22,22,28,4,9
+sp|Q8U1P9,PYRFU,NA,RBL,1,37,0,22,40,16,38,10,28,32,38,16,9,20,6,22,17,16,26,8,19
+sp|Q9ZI34,BRAJA,NA,RBL,1,48,5,28,29,19,45,14,23,24,37,16,15,22,12,30,21,33,37,8,20