pychemstation 0.5.3.dev1__py3-none-any.whl → 0.5.5__py3-none-any.whl

pychemstation/control/table/table_controller.py

@@ -6,6 +6,7 @@ Authors: Lucy Hao
 
 import abc
 import os
+import time
 from typing import Union, Optional
 
 import polling
@@ -15,7 +16,7 @@ from ...control import CommunicationController
 from ...utils.chromatogram import AgilentHPLCChromatogram
 from ...utils.macro import Command, HPLCRunningStatus, Response
 from ...utils.method_types import MethodTimetable
-from ...utils.sequence_types import SequenceDataFiles
+from ...utils.sequence_types import SequenceDataFiles, SequenceTable
 from ...utils.table_types import Table, TableOperation, RegisterFlag
 
 
@@ -82,6 +83,11 @@ class TableController(abc.ABC):
     def get_row(self, row: int):
         pass
 
+    def delete_row(self, row: int):
+        self.sleepy_send(TableOperation.DELETE_ROW.value.format(register=self.table.register,
+                                                                table_name=self.table.name,
+                                                                row=row))
+
     def add_row(self):
         """
         Adds a row to the provided table for currently loaded method or sequence.
@@ -124,7 +130,7 @@ class TableController(abc.ABC):
         res = self.controller.receive()
 
         if res.is_ok():
-            self.send("Sleep 1")
+            self.send("Sleep 0.1")
             self.send('Print Rows')
             return res
         else:
@@ -137,24 +143,42 @@ class TableController(abc.ABC):
             max_tries=10)
         return started_running
 
-    def check_hplc_done_running(self, method: Optional[MethodTimetable] = None) -> Result[str, str]:
+    def check_hplc_done_running(self,
+                                method: Optional[MethodTimetable] = None,
+                                sequence: Optional[SequenceTable] = None) -> Result[str, str]:
         """
         Checks if ChemStation has finished running and can read data back
 
         :param method: if you are running a method and want to read back data, the timeout period will be adjusted to be longer than the method's runtime
         :return: Return True if data can be read back, else False.
         """
-        timeout = 10 * 60 if method is None else (method.first_row.maximum_run_time + 2) * 60
+        timeout = 10 * 60
+        if method:
+            timeout = ((method.first_row.maximum_run_time + 2) * 60)
+        if sequence:
+            timeout *= len(sequence.rows)
+
         most_recent_folder = self.retrieve_recent_data_files()
         finished_run = polling.poll(
-            lambda: self.controller.check_if_running(most_recent_folder),
+            lambda: self.controller.check_if_running(),
             timeout=timeout,
-            step=30
+            step=60
         )
+
         if finished_run:
-            subdirs = [x[0] for x in os.walk(self.data_dir)]
-            potential_folders = sorted(list(filter(lambda d: most_recent_folder in d, subdirs)))
-            return Ok(potential_folders[0])
+            if os.path.exists(most_recent_folder):
+                return Ok(most_recent_folder)
+            else:
+                subdirs = [x[0] for x in os.walk(self.data_dir)]
+                potential_folders = sorted(list(filter(lambda d: most_recent_folder in d, subdirs)))
+                parent_dirs = []
+                for folder in potential_folders:
+                    path = os.path.normpath(folder)
+                    split_folder = path.split(os.sep)
+                    if most_recent_folder in split_folder[-1]:
+                        parent_dirs.append(folder)
+                parent_dir = sorted(parent_dirs, reverse=True)[0]
+                return Ok(parent_dir)
         else:
             return Err("Run did not complete as expected")
 

pychemstation/utils/chromatogram.py

@@ -1,17 +1,14 @@
 """Module for HPLC chromatogram data loading and manipulating"""
 
 import os
-import logging
 import time
+from dataclasses import dataclass
 
 import numpy as np
 
 from .parsing import CHFile
 from ..analysis import AbstractSpectrum
 
-# Chemstation data path
-DATA_DIR = r"C:\Chem32\1\Data"
-
 # standard filenames for spectral data
 CHANNELS = {"A": "01", "B": "02", "C": "03", "D": "04"}
 
@@ -105,26 +102,10 @@ class AgilentHPLCChromatogram(AbstractSpectrum):
             np.savez_compressed(npz_file, times=data.times, values=data.values)
             return np.array(data.times), np.array(data.values)
 
-    def extract_peakarea(self, experiment_dir: str):
-        """
-        Reads processed data from Chemstation report files.
 
-        Args:
-            experiment_dir: .D directory with the report files
-        """
-        # filename = os.path.join(experiment_dir, f"REPORT{CHANNELS[channel]}.csv")
-        # TODO parse file properly
-        # data = np.genfromtxt(filename, delimiter=',')
-        # return data
-        pass
-
-    def default_processing(self):
-        """
-        Processes the chromatogram in place.
-        """
-        # trim first 5 min and last 3 min of run
-        self.trim(5, 25)
-        # parameters found to work best for chromatogram data
-        self.correct_baseline(lmbd=1e5, p=0.0001, n_iter=10)
-        # get all peaks in processed chromatogram
-        self.find_peaks()
+@dataclass
+class AgilentChannelChromatogramData:
+    A: AgilentHPLCChromatogram
+    B: AgilentHPLCChromatogram
+    C: AgilentHPLCChromatogram
+    D: AgilentHPLCChromatogram

pychemstation/utils/table_types.py

@@ -9,6 +9,7 @@ class TableOperation(Enum):
     DELETE_TABLE = 'DelTab {register}, "{table_name}"'
     CREATE_TABLE = 'NewTab {register}, "{table_name}"'
     NEW_ROW = 'InsTabRow {register}, "{table_name}"'
+    DELETE_ROW = 'DelTabRow {register}, "{table_name}", {row}'
     EDIT_ROW_VAL = 'SetTabVal "{register}", "{table_name}", {row}, "{col_name}", {val}'
     EDIT_ROW_TEXT = 'SetTabText "{register}", "{table_name}", {row}, "{col_name}", "{val}"'
     GET_ROW_VAL = 'TabVal("{register}", "{table_name}", {row}, "{col_name}")'

{pychemstation-0.5.3.dev1.dist-info → pychemstation-0.5.5.dist-info}/METADATA

@@ -1,8 +1,8 @@
 Metadata-Version: 2.1
 Name: pychemstation
-Version: 0.5.3.dev1
+Version: 0.5.5
 Summary: Library to interact with Chemstation software, primarily used in Hein lab
-Home-page: https://gitlab.com/heingroup/pychemstation
+Home-page: https://gitlab.com/heingroup/device-api/pychemstation
 Author: Lucy Hao
 Author-email: lhao03@student.ubc.ca
 Classifier: Programming Language :: Python :: 3
@@ -12,6 +12,7 @@ Description-Content-Type: text/markdown
 License-File: LICENSE
 Requires-Dist: polling
 Requires-Dist: seabreeze
+Requires-Dist: xsdata
 
 # Agilent HPLC Macro Control
 
@@ -40,7 +41,7 @@ pip install pychemstation
    where you will put your
    MACRO file(s).
 3. Download the [
-   `hplc_talk.mac`](https://github.com/croningp/analyticallabware/blob/master/AnalyticalLabware/devices/Agilent/hplctalk.mac).
+   `hplc_talk.mac`](https://gitlab.com/heingroup/device-api/pychemstation/-/blob/main/tests/hplc_talk.mac).
     - On line 69, change the path name up to `\cmd` and `\reply`. For instance, you should have:
       `MonitorFile "[my path]\cmd", "[my path]\reply"`
     - and then add this file to the folder from the previous step.
@@ -77,13 +78,12 @@ hplc_controller = HPLCController(data_dir=DATA_DIR,
 hplc_controller.preprun()
 hplc_controller.switch_method(method_name=DEFAULT_METHOD)
 hplc_controller.run_method(experiment_name="Run 10")
-data_status_valid, chrom = hplc_controller.get_last_run_method_data()
+chrom = hplc_controller.get_last_run_method_data()
 
-if data_status_valid:
-    # afterwards, save, analyze or plot the data!
-    values = {"x": chrom.x, "y": chrom.y}
-    chromatogram_data = pd.DataFrame.from_dict(values)
-    chromatogram_data.to_csv("Run 10.csv", index=False) 
+# afterwards, save, analyze or plot the data!
+values = {"x": chrom.A.x, "y": chrom.A.y}
+chromatogram_data = pd.DataFrame.from_dict(values)
+chromatogram_data.to_csv("Run 10.csv", index=False) 
 ```
 
 ## Adding your own MACROs
@@ -102,3 +102,6 @@ Lucy Hao
 
 - Adapted from [**AnalyticalLabware**](https://github.com/croningp/analyticallabware), created by members in the Cronin
   Group. Copyright © Cronin Group, used under the [CC-BY-4.0](https://creativecommons.org/licenses/by/4.0/) license.
+- Adapted from the [MACROS](https://github.com/Bourne-Group/HPLCMethodOptimisationGUI)
+  used in [**Operator-free HPLC automated method development guided by Bayesian optimization**](https://pubs.rsc.org/en/content/articlelanding/2024/dd/d4dd00062e),
+  created by members in the Bourne Group.  Copyright © Bourne Group, used under the [MIT](https://opensource.org/license/mit) license.

pychemstation-0.5.5.dist-info/RECORD

@@ -0,0 +1,39 @@
+pychemstation/__init__.py,sha256=SpTl-Tg1B1HTyjNOE-8ue-N2wGnXN_2zl7RFUSxlkiM,33
+pychemstation/analysis/__init__.py,sha256=EWoU47iyn9xGS-b44zK9eq50bSjOV4AC5dvt420YMI4,44
+pychemstation/analysis/base_spectrum.py,sha256=FBvwzLtF9mdqW7f8ETY9G4cpfJ-SzbiSkZq9EtXcSXo,17045
+pychemstation/analysis/spec_utils.py,sha256=8NZMV0dtfxZLARjWzM5ks0tgEYQv_SKUiZzba2IoKgw,10505
+pychemstation/analysis/utils.py,sha256=ISupAOb_yqA4_DZRK9v18UL-XjUQccAicIJKb1VMnGg,2055
+pychemstation/control/__init__.py,sha256=4xTy8X-mkn_PPZKr7w9rnj1wZhtmTesbQptPhpYmKXs,64
+pychemstation/control/comm.py,sha256=u44g1hTluQ0yUG93Un-QAshScoDpgYRrZfFTgweP5tY,7386
+pychemstation/control/hplc.py,sha256=L1-cBQ7-thuITx1Mqq3lYXo832nEQtRJEX7nlLvRYrg,6732
+pychemstation/control/controllers/__init__.py,sha256=di3ytLIK-35XC_THw4IjNaOtCUTe7GuEOFb-obmREw4,166
+pychemstation/control/controllers/comm.py,sha256=iltKMNfdp_8INA5Vss9asI2LxJam_Ro3YWBHBQFr4t0,7353
+pychemstation/control/controllers/method.py,sha256=SoKwteVfalgP1z7aKPNlaUJ01Gsr0MIoa7f-c2sjDrE,12259
+pychemstation/control/controllers/sequence.py,sha256=bHx15uSA0ZjAy6xpyxwhWUNP54WcEL0nJ24bzYCa4rc,10719
+pychemstation/control/controllers/table_controller.py,sha256=N47eiowmmy9gi18fChNh-cW6z8bbRSF30pLzhnWG9_k,8227
+pychemstation/control/table/__init__.py,sha256=RgMN4uIWHdNUHpGRBWdzmzAbk7XEKl6Y-qtqWCxzSZU,124
+pychemstation/control/table/method.py,sha256=THVoGomSXff_CTU3eAYme0BYwkPzab5UgZKsiZ29QSk,12196
+pychemstation/control/table/sequence.py,sha256=Eri52AnbE3BGthfrRSvYKYciquUzvHKo0lYUTySYYE8,10542
+pychemstation/control/table/table_controller.py,sha256=F5lv1DlPkEDcFmtwVT-E9Kq075jnWIN-iZIM3_mTt5E,8115
+pychemstation/generated/__init__.py,sha256=GAoZFAYbPVEJDkcOw3e1rgOqd7TCW0HyKNPM8OMehMg,1005
+pychemstation/generated/dad_method.py,sha256=0W8Z5WDtF5jpIcudMqb7XrkTnR2EGg_QOCsHRFQ0rmM,8402
+pychemstation/generated/pump_method.py,sha256=sUhE2Oo00nzVcoONtq3EMWsN4wLSryXbG8f3EeViWKg,12174
+pychemstation/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+pychemstation/utils/chromatogram.py,sha256=KzhEQbxKbwOu4OjKa4XJFq2y08JUwMRoaupHrDR8cLM,3094
+pychemstation/utils/macro.py,sha256=BAIcE_dppNffwrSqGq8gh0ccE9YAJfQFQZHXJgA1WtA,2586
+pychemstation/utils/method_types.py,sha256=YngbyHg96JSFnvhm5Zd7wJvLTQPPQsLbvbyz3HlGLYY,862
+pychemstation/utils/parsing.py,sha256=bnFIsZZwFy9NKzVUf517yN-ogzQbm0hp_aho3KUD6Is,9317
+pychemstation/utils/sequence_types.py,sha256=3VqiUHsfFEdynAxfR-z8JIWBCo7PdnGwTvsk7sm7Ij8,1055
+pychemstation/utils/table_types.py,sha256=cN51Ry2pammDdk85cabVH3qkchjKKIzZfAH87Poty80,2350
+pychemstation/utils/tray_types.py,sha256=UUDED-IAf-8FmPVZezuWSiIQE_HgiZQMV2sTqu4oZw8,177
+tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+tests/constants.py,sha256=lLwT_QaVriivL5llkul6RxXxPriwUp1E-Y3G9fejvbo,2092
+tests/test_comb.py,sha256=faF4764oJEZ2vhG9-zLmQxjATseipRKXrStehuDCXOI,5638
+tests/test_comm.py,sha256=1ZZd0UrIBOKe91wzA-XI-gSRgXmId9mLWYSMeche82Y,2973
+tests/test_method.py,sha256=uCPpZVYKPz1CNWwhmBo_8TH0ku2V0ZpDZJj3f8iINB4,2440
+tests/test_sequence.py,sha256=yIQGhUTehtHz6D1ai5W6AlP0zes2icF0VdQ0IGJ2CbQ,4901
+pychemstation-0.5.5.dist-info/LICENSE,sha256=9bdF75gIf1MecZ7oymqWgJREVz7McXPG-mjqrTmzzD8,18658
+pychemstation-0.5.5.dist-info/METADATA,sha256=sAsryhHjIHyT6y10BQP2rEUh49dLJ_2wCchNgQ1M4JY,4307
+pychemstation-0.5.5.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
+pychemstation-0.5.5.dist-info/top_level.txt,sha256=zXfKu_4nYWwPHo3OsuhshMNC3SPkcoTGCyODjURaghY,20
+pychemstation-0.5.5.dist-info/RECORD,,

tests/constants.py

@@ -4,7 +4,7 @@ from pychemstation.utils.method_types import *
 from pychemstation.utils.sequence_types import *
 
 DEFAULT_METHOD = "GENERAL-POROSHELL-OPT"
-DEFAULT_SEQUENCE = "hplc_testing"
+DEFAULT_SEQUENCE = "LLETest"
 
 # CONSTANTS: paths only work in Hein group HPLC machine in room 242
 DEFAULT_COMMAND_PATH = "C:\\Users\\User\\Desktop\\Lucy\\"
@@ -20,8 +20,8 @@ HEIN_LAB_CONSTANTS = [DEFAULT_COMMAND_PATH,
 # these CONSTANTS work in rm 254
 DEFAULT_COMMAND_PATH_254 = "D:\\\git_repositories\\\hplc_comm\\"
 DEFAULT_METHOD_DIR_254 = "D:\\Chemstation\\1\\Methods\\"
-DATA_DIR_254 = "D:\\Chemstation\\1\\Data"
-SEQUENCE_DIR_254 = "C:\\1\\Sequence"
+DATA_DIR_254 = "D:\\Chemstation\\1\\Data\\2024-12\\"
+SEQUENCE_DIR_254 = "C:\\1\\Sequence\\"
 
 HEIN_LAB_CONSTANTS_254 = [DEFAULT_COMMAND_PATH_254,
                           DEFAULT_METHOD_DIR_254,
@@ -42,7 +42,7 @@ def gen_rand_method():
     return MethodTimetable(
         first_row=HPLCMethodParams(
             organic_modifier=org_modifier,
-            flow=random.random(),
+            flow=round(random.random(), 2),
             maximum_run_time=max_run_time),
         subsequent_rows=[
             TimeTableEntry(

tests/test_comb.py

@@ -5,9 +5,7 @@ import unittest
 from pychemstation.control import HPLCController
 from tests.constants import *
 
-run_too = False
-
-
+run_too = True
 
 
 class TestCombinations(unittest.TestCase):
@@ -24,11 +22,23 @@ class TestCombinations(unittest.TestCase):
                                               sequence_dir=path_constants[3])
 
     def test_run_method_after_update(self):
-        self.hplc_controller.method_controller.switch(DEFAULT_METHOD)
-
         try:
-            rand_method = gen_rand_method()
-            self.hplc_controller.edit_method(rand_method)
+            self.hplc_controller.method_controller.switch(DEFAULT_METHOD)
+            rand_method = MethodTimetable(
+                first_row=HPLCMethodParams(
+                    organic_modifier=5,
+                    flow=0.65,
+                    maximum_run_time=2),
+                subsequent_rows=[
+                    TimeTableEntry(
+                        start_time=0.10,
+                        organic_modifer=5,
+                        flow=0.34),
+                    TimeTableEntry(
+                        start_time=1,
+                        organic_modifer=98,
+                        flow=0.55)])
+            self.hplc_controller.edit_method(rand_method, save=True)
             if run_too:
                 self.hplc_controller.run_method(experiment_name="changed_method")
         except Exception as e:
@@ -38,13 +48,24 @@ class TestCombinations(unittest.TestCase):
         try:
             self.hplc_controller.switch_sequence(sequence_name=DEFAULT_SEQUENCE)
             seq_table = self.hplc_controller.load_sequence()
-            seq_table.rows[0].vial_location = TenColumn.FIVE
-            seq_table.rows[1].vial_location = TenColumn.ONE
-            seq_table.rows[0].inj_source = InjectionSource.HIP_ALS
-            seq_table.rows[1].inj_source = InjectionSource.MANUAL
+            seq_table.rows.append(SequenceEntry(
+                vial_location=TenColumn.ONE,
+                method=DEFAULT_METHOD,
+                num_inj=3,
+                inj_vol=4,
+                sample_name="Sampel1",
+                sample_type=SampleType.SAMPLE,
+            ))
+            seq_table.rows[0] = SequenceEntry(
+                vial_location=TenColumn.ONE,
+                method=DEFAULT_METHOD,
+                num_inj=3,
+                inj_vol=4,
+                sample_name="Sampel2",
+                sample_type=SampleType.SAMPLE)
             self.hplc_controller.edit_sequence(seq_table)
             if run_too:
-                self.hplc_controller.run_sequence(seq_table)
+                self.hplc_controller.run_sequence()
                 chrom = self.hplc_controller.get_last_run_sequence_data()
                 self.assertTrue(len(chrom) == 2)
         except Exception as e:
@@ -56,7 +77,7 @@ class TestCombinations(unittest.TestCase):
             seq_table = self.hplc_controller.load_sequence()
             self.hplc_controller.edit_sequence_row(seq_entry, 1)
             if run_too:
-                self.hplc_controller.run_sequence(seq_table)
+                self.hplc_controller.run_sequence()
                 chrom = self.hplc_controller.get_last_run_sequence_data()
                 self.assertTrue(len(chrom) == 2)
         except Exception:
@@ -65,65 +86,58 @@ class TestCombinations(unittest.TestCase):
     def test_update_method_update_seq_table_run(self):
         try:
             self.hplc_controller.method_controller.switch(DEFAULT_METHOD)
-            rand_method = gen_rand_method()
+            rand_method = MethodTimetable(
+                first_row=HPLCMethodParams(
+                    organic_modifier=5,
+                    flow=0.65,
+                    maximum_run_time=2),
+                subsequent_rows=[
+                    TimeTableEntry(
+                        start_time=0.50,
+                        organic_modifer=99,
+                        flow=0.34)])
             self.hplc_controller.edit_method(rand_method, save=True)
 
             self.hplc_controller.switch_sequence(sequence_name=DEFAULT_SEQUENCE)
-            seq_table = self.hplc_controller.load_sequence()
-            seq_table.rows[0].vial_location = TenColumn.ONE
-            seq_table.rows[0].inj_source = InjectionSource.HIP_ALS
-            seq_table.rows[1].vial_location = TenColumn.TWO
-            seq_table.rows[1].inj_source = InjectionSource.HIP_ALS
-            self.hplc_controller.edit_sequence(seq_table)
-
-            if run_too:
-                self.hplc_controller.run_sequence(seq_table)
-                chrom = self.hplc_controller.get_last_run_sequence_data()
-                self.assertTrue(len(chrom) == 2)
-        except Exception:
-            self.fail("Failed")
-
-    def test_update_table_then_row(self):
-        try:
-            self.hplc_controller.method_controller.switch(DEFAULT_METHOD)
-            self.hplc_controller.switch_sequence(sequence_name=DEFAULT_SEQUENCE)
-            rand_method = gen_rand_method()
-            self.hplc_controller.edit_method(rand_method, save=True)
-
-            seq_table = self.hplc_controller.load_sequence()
-            seq_table.rows[0].vial_location = TenColumn.ONE
-            seq_table.rows[0].inj_source = InjectionSource.HIP_ALS
-            seq_table.rows[0].method = DEFAULT_METHOD
-            seq_table.rows[1].vial_location = TenColumn.TWO
-            seq_table.rows[1].inj_source = InjectionSource.HIP_ALS
-            seq_table.rows[1].method = DEFAULT_METHOD
+            seq_table = SequenceTable(
+                name=DEFAULT_SEQUENCE,
+                rows=[
+                    SequenceEntry(
+                        vial_location=8320,
+                        sample_name="WM-01-001_Cr-Org",
+                        method=DEFAULT_METHOD,
+                        inj_source=InjectionSource.HIP_ALS,
+                        inj_vol=2,
+                        num_inj=1,
+                        sample_type=SampleType.SAMPLE
+                    ),
+                    SequenceEntry(
+                        vial_location=8448,
+                        sample_name="WM-01-001_Cr-Aq",
+                        method=DEFAULT_METHOD,
+                        inj_source=InjectionSource.HIP_ALS,
+                        inj_vol=2,
+                        num_inj=1,
+                        sample_type=SampleType.SAMPLE
+                    ),
+                ]
+            )
 
             self.hplc_controller.edit_sequence(seq_table)
-            self.hplc_controller.edit_sequence_row(
-                SequenceEntry(
-                    vial_location=TenColumn.ONE,
-                    method=DEFAULT_METHOD,
-                    num_inj=3,
-                    inj_vol=4,
-                    sample_name="Blank",
-                    sample_type=SampleType.BLANK,
-                )
-            )
             if run_too:
-                self.hplc_controller.run_sequence(seq_table)
+                self.hplc_controller.preprun()
+                self.hplc_controller.run_sequence()
                 chrom = self.hplc_controller.get_last_run_sequence_data()
                 self.assertTrue(len(chrom) == 2)
         except Exception:
             self.fail("Failed")
 
-    def test_run_after_new_row_edit(self):
+    def test_run_sequence(self):
         try:
             self.hplc_controller.switch_sequence(sequence_name=DEFAULT_SEQUENCE)
-            seq_table = self.hplc_controller.load_sequence()
-            self.hplc_controller.edit_sequence_row(seq_entry, 3)
-            if run_too:
-                self.hplc_controller.run_sequence(seq_table)
-                chrom = self.hplc_controller.get_last_run_sequence_data()
-                self.assertTrue(len(chrom) == 2)
+            self.hplc_controller.preprun()
+            self.hplc_controller.run_sequence()
+            chrom = self.hplc_controller.get_last_run_sequence_data()
+            self.assertTrue(len(chrom) == 2)
         except Exception:
             self.fail("Failed")

tests/test_sequence.py

@@ -63,6 +63,54 @@ class TestSequence(unittest.TestCase):
                         sample_name="Sampel2",
                         sample_type=SampleType.SAMPLE,
                         inj_source=InjectionSource.HIP_ALS
+                    ),
+                    SequenceEntry(
+                        vial_location=TenColumn.TEN,
+                        method=DEFAULT_METHOD,
+                        num_inj=3,
+                        inj_vol=4,
+                        sample_name="Sampel2",
+                        sample_type=SampleType.SAMPLE,
+                        inj_source=InjectionSource.HIP_ALS
+                    ),
+                    SequenceEntry(
+                        vial_location=TenColumn.THREE,
+                        method=DEFAULT_METHOD,
+                        num_inj=3,
+                        inj_vol=4,
+                        sample_name="Sampel2",
+                        sample_type=SampleType.SAMPLE,
+                        inj_source=InjectionSource.HIP_ALS
+                    )
+                ]
+            )
+            self.hplc_controller.edit_sequence(seq_table)
+        except Exception:
+            self.fail("Should have not occured")
+
+    def test_edit_entire_table_less_rows(self):
+        self.hplc_controller.switch_sequence(sequence_name=DEFAULT_SEQUENCE)
+        try:
+            seq_table = SequenceTable(
+                name=DEFAULT_SEQUENCE,
+                rows=[
+                    SequenceEntry(
+                        vial_location=TenColumn.TEN,
+                        method=DEFAULT_METHOD,
+                        num_inj=3,
+                        inj_vol=4,
+                        sample_name="Sampel2",
+                        sample_type=SampleType.SAMPLE,
+                        inj_source=InjectionSource.HIP_ALS
+                    ),
+                    SequenceEntry(
+                        vial_location=TenColumn.THREE,
+                        method=DEFAULT_METHOD,
+                        num_inj=3,
+                        inj_vol=4,
+                        sample_name="Sampel2",
+                        sample_type=SampleType.SAMPLE,
+                        inj_source=InjectionSource.HIP_ALS
                     )
                 ]
             )

pychemstation-0.5.3.dev1.dist-info/RECORD

@@ -1,34 +0,0 @@
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-pychemstation/utils/table_types.py,sha256=HAxAsqmyWsCqGwhg4LadGlX6ubacsd8tjXXz-6DL2nI,2287
-pychemstation/utils/tray_types.py,sha256=UUDED-IAf-8FmPVZezuWSiIQE_HgiZQMV2sTqu4oZw8,177
-tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-tests/constants.py,sha256=CqahQtWK0NSGIpoCOY_uoN4BwR6TFtaX9wPAkPkG9BE,2074
-tests/test_comb.py,sha256=IrCqsGEBdrAqoGBQuKiJiaGRW9Ym9UNlVjPA9gc2UrA,5431
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-pychemstation-0.5.3.dev1.dist-info/METADATA,sha256=YIbggvShXX-YxNtMFlMXfJIIB0LanjwtYBLz7O5Ttdw,3964
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-pychemstation-0.5.3.dev1.dist-info/RECORD,,