pychemstation 0.5.11__py3-none-any.whl → 0.5.13__py3-none-any.whl

{pychemstation-0.5.11.dist-info → pychemstation-0.5.13.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pychemstation
-Version: 0.5.11
+Version: 0.5.13
 Summary: Library to interact with Chemstation software, primarily used in Hein lab
 Home-page: https://gitlab.com/heingroup/device-api/pychemstation
 Author: Lucy Hao
@@ -14,6 +14,7 @@ Requires-Dist: polling
 Requires-Dist: seabreeze
 Requires-Dist: xsdata
 Requires-Dist: result
+Requires-Dist: rainbow-api
 
 # Agilent HPLC Macro Control
 
@@ -99,7 +100,7 @@ our [GitLab](https://gitlab.com/heingroup/device-api/pychemstation)!
 
 ## Authors and Acknowledgements
 
-Lucy Hao
+Lucy Hao, Maria Politi
 
 - Adapted from [**AnalyticalLabware**](https://github.com/croningp/analyticallabware), created by members in the Cronin
   Group. Copyright © Cronin Group, used under the [CC-BY-4.0](https://creativecommons.org/licenses/by/4.0/) license.

pychemstation-0.5.13.dist-info/RECORD

@@ -0,0 +1,52 @@
+pychemstation/__init__.py,sha256=SpTl-Tg1B1HTyjNOE-8ue-N2wGnXN_2zl7RFUSxlkiM,33
+pychemstation/analysis/__init__.py,sha256=EWoU47iyn9xGS-b44zK9eq50bSjOV4AC5dvt420YMI4,44
+pychemstation/analysis/base_spectrum.py,sha256=XPf9eJ72uz0CnxCY5uFOyu1MbVX-OTTXeN1tLzIMok4,16536
+pychemstation/analysis/spec_utils.py,sha256=UOo9hJR3evJfmaohEEsyb7aq6X996ofuUfu-GKjiDi8,10201
+pychemstation/analysis/utils.py,sha256=ISupAOb_yqA4_DZRK9v18UL-XjUQccAicIJKb1VMnGg,2055
+pychemstation/control/__init__.py,sha256=4xTy8X-mkn_PPZKr7w9rnj1wZhtmTesbQptPhpYmKXs,64
+pychemstation/control/comm.py,sha256=u44g1hTluQ0yUG93Un-QAshScoDpgYRrZfFTgweP5tY,7386
+pychemstation/control/hplc.py,sha256=UlafodQoFFow2UVo-INK1ZjxyJ5vrVvv1TjB5VyAsHo,9178
+pychemstation/control/controllers/__init__.py,sha256=EM6LBNSTJqYVatmnvPq0P-S3q0POA88c-y64zL79I_I,252
+pychemstation/control/controllers/comm.py,sha256=IU4I_Q42VNCNUlVi93MxCmw2EBY9hiBDkU9FxubKg3c,7441
+pychemstation/control/controllers/method.py,sha256=XUclB7lQ_SIkquR58MBmmi9drHIPEq9AR8VprTLenvI,15503
+pychemstation/control/controllers/sequence.py,sha256=kYNxxck2I-q9mZDEZwG8bJ_99FfLmunS13EAHOS65wU,8288
+pychemstation/control/controllers/table_controller.py,sha256=70ovnIjLKkJborS1ztk445Mv42TtUM9jUniaQmZuyWQ,11031
+pychemstation/control/controllers/devices/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+pychemstation/control/controllers/devices/column.py,sha256=SCpCnVFZFUM9LM51MbWkVcBRayN3WFxy7lz9gs2PYeY,348
+pychemstation/control/controllers/devices/device.py,sha256=SF1JK93FjmACnYrlKvldX3gEeA21qnXZegeNhc9QJGQ,738
+pychemstation/control/controllers/devices/injector.py,sha256=PfkSQlpE1zMzwyJ55Km1AdtPtdOS2RNyHDwAt_ZNa6M,349
+pychemstation/control/controllers/devices/pump.py,sha256=DJQh4lNXEraeC1CWrsKmsITOjuYlRI3tih_XRB3F1hg,1404
+pychemstation/control/controllers/tables/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+pychemstation/control/controllers/tables/method.py,sha256=Woni_nAEWRZ79wf2WixLnJWZONNdGgZGGV9GG7m0qCQ,16189
+pychemstation/control/controllers/tables/ms.py,sha256=JFD-tOhu8uRyKdl-E3-neRssii8MNqVRIlsrnFhNY_M,682
+pychemstation/control/controllers/tables/sequence.py,sha256=vqwJeV38YWdFnaDXvZVOGYl-UCV9lmMbh8Fj5kQ3mqY,8815
+pychemstation/control/controllers/tables/table.py,sha256=5AIzomkl9-iN4-WijzuGT_pkGndAsqqlm8Pv_h8Mg4k,11911
+pychemstation/control/table/__init__.py,sha256=RgMN4uIWHdNUHpGRBWdzmzAbk7XEKl6Y-qtqWCxzSZU,124
+pychemstation/control/table/method.py,sha256=THVoGomSXff_CTU3eAYme0BYwkPzab5UgZKsiZ29QSk,12196
+pychemstation/control/table/sequence.py,sha256=Eri52AnbE3BGthfrRSvYKYciquUzvHKo0lYUTySYYE8,10542
+pychemstation/control/table/table_controller.py,sha256=HVNYUXqtyFTAvb67fa3RO5RHgmBTFMsYRHKpiXdYcfs,8313
+pychemstation/generated/__init__.py,sha256=GAoZFAYbPVEJDkcOw3e1rgOqd7TCW0HyKNPM8OMehMg,1005
+pychemstation/generated/dad_method.py,sha256=0W8Z5WDtF5jpIcudMqb7XrkTnR2EGg_QOCsHRFQ0rmM,8402
+pychemstation/generated/pump_method.py,sha256=sUhE2Oo00nzVcoONtq3EMWsN4wLSryXbG8f3EeViWKg,12174
+pychemstation/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+pychemstation/utils/chromatogram.py,sha256=-q3_hL9GTyi4C95os7IwAiOrkTM4EXIiigm-nW9pFmM,3221
+pychemstation/utils/injector_types.py,sha256=xOkvlX_cH_QmuKbyXj8Lc2JEA_6g82az1zB4oTwcKN0,386
+pychemstation/utils/macro.py,sha256=OCQRRC-f46RlhenZfe7ldSgxBhzcZ5JlW3Ej-9OfeSI,2847
+pychemstation/utils/method_types.py,sha256=e7c2nWub6pT_S8ZF6sd7uXYm9ZBno0mARnzc1hnSHPY,1516
+pychemstation/utils/parsing.py,sha256=bnFIsZZwFy9NKzVUf517yN-ogzQbm0hp_aho3KUD6Is,9317
+pychemstation/utils/pump_types.py,sha256=HWQHxscGn19NTrfYBwQRCO2VcYfwyko7YfBO5uDhEm4,93
+pychemstation/utils/sequence_types.py,sha256=4cNpmRdPLN5oGN7ozHgT21E65aBO8vV3ZcRXMOQ3EA8,1084
+pychemstation/utils/table_types.py,sha256=mlbxPAiPvO_EBba5OSzuJcpCL0srrC7uUfm_lKsOsmA,2557
+pychemstation/utils/tray_types.py,sha256=MaHN36rhcEI5mAY95VU8hfP9HhAlngQvMYq-2oyC0hc,764
+tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+tests/constants.py,sha256=4FPJjW97yn6QiHNQVSlqjjJUE-Bh9SmyjIvgAeaGQBU,2450
+tests/test_comb.py,sha256=EDE1Ve0A_EK4qro9imZsrD0xXrQN8hAowiOWPFtw3dM,5515
+tests/test_comm.py,sha256=EYOpVXzEMQLGhhKYDPO-KaLcJdPSMPTD9Y4jSI0yVQY,2516
+tests/test_inj.py,sha256=yaPGZoHiOC3ZSgsmrtiqp8QtSo2bMxB9FJhaFlOpad0,1412
+tests/test_method.py,sha256=Up2EEysYwldPT9GJw27Mycs6qi_Y2W3opjhc7wnLU9U,3215
+tests/test_sequence.py,sha256=Nz2iqp1cJgw6kcQvnwSkfBmhxpOH62PoEu6o_5rO-PY,4929
+pychemstation-0.5.13.dist-info/LICENSE,sha256=9bdF75gIf1MecZ7oymqWgJREVz7McXPG-mjqrTmzzD8,18658
+pychemstation-0.5.13.dist-info/METADATA,sha256=Ni0HBLM4rqsJSKjDFCbZzo2xLPWWTHAMQJuSKvxBtXQ,4371
+pychemstation-0.5.13.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
+pychemstation-0.5.13.dist-info/top_level.txt,sha256=zXfKu_4nYWwPHo3OsuhshMNC3SPkcoTGCyODjURaghY,20
+pychemstation-0.5.13.dist-info/RECORD,,

tests/constants.py

@@ -20,7 +20,7 @@ HEIN_LAB_CONSTANTS = [DEFAULT_COMMAND_PATH,
 # these CONSTANTS work in rm 254
 DEFAULT_COMMAND_PATH_254 = "D:\\\git_repositories\\\hplc_comm\\"
 DEFAULT_METHOD_DIR_254 = "D:\\Chemstation\\1\\Methods\\"
-DATA_DIR_254 = "D:\\Chemstation\\1\\Data\\2024-12\\"
+DATA_DIR_254 = "D:\\Chemstation\\1\\Data\\LC BO\\"
 SEQUENCE_DIR_254 = "C:\\1\\Sequence\\"
 
 HEIN_LAB_CONSTANTS_254 = [DEFAULT_COMMAND_PATH_254,

tests/test_inj.py

@@ -0,0 +1,38 @@
+import os
+import unittest
+
+from pychemstation.control import HPLCController
+from tests.constants import *
+
+
+class TestInj(unittest.TestCase):
+    def setUp(self):
+        path_constants = room(254)
+        for path in path_constants:
+            if not os.path.exists(path):
+                self.fail(
+                    f"{path} does not exist on your system. If you would like to run tests, please change this path.")
+
+        self.hplc_controller = HPLCController(comm_dir=path_constants[0],
+                                              method_dir=path_constants[1],
+                                              data_dir=path_constants[2],
+                                              sequence_dir=path_constants[3])
+
+    def test_load_inj(self):
+        self.hplc_controller.switch_method(DEFAULT_METHOD)
+        try:
+            gp_mtd = self.hplc_controller.method_controller.load_from_disk(DEFAULT_METHOD)
+            self.assertTrue(gp_mtd.first_row.organic_modifier == 5)
+        except Exception as e:
+            self.fail(f"Should have not failed, {e}")
+
+    def test_edit_inj(self):
+        self.hplc_controller.method_controller.switch(DEFAULT_METHOD)
+        new_method = gen_rand_method()
+        try:
+            self.hplc_controller.edit_method(new_method)
+        except Exception as e:
+            self.fail(f"Should have not failed: {e}")
+
+if __name__ == '__main__':
+    unittest.main()

tests/test_method.py

@@ -56,6 +56,26 @@ class TestMethod(unittest.TestCase):
         except Exception as e:
             self.fail(f"Should have not failed: {e}")
 
+    def test_run_10_times(self):
+        self.hplc_controller.method_controller.switch(DEFAULT_METHOD)
+        rand_method = MethodDetails(
+            name=DEFAULT_METHOD,
+            params=HPLCMethodParams(
+                organic_modifier=5,
+                flow=0.65),
+            timetable=[TimeTableEntry(
+                start_time=0.50,
+                organic_modifer=99,
+                flow=0.65)],
+            stop_time=1,
+            post_time=0)
+        self.hplc_controller.edit_method(rand_method, save=True)
+        try:
+            for _ in range(10):
+                self.hplc_controller.run_method(experiment_name="limiting_testing")
+        except Exception as e:
+            self.fail(f"Should have not failed: {e}")
+
 
 if __name__ == '__main__':
-    unittest.main()
+    unittest.main()

pychemstation-0.5.11.dist-info/RECORD

@@ -1,39 +0,0 @@
-pychemstation/__init__.py,sha256=SpTl-Tg1B1HTyjNOE-8ue-N2wGnXN_2zl7RFUSxlkiM,33
-pychemstation/analysis/__init__.py,sha256=EWoU47iyn9xGS-b44zK9eq50bSjOV4AC5dvt420YMI4,44
-pychemstation/analysis/base_spectrum.py,sha256=XPf9eJ72uz0CnxCY5uFOyu1MbVX-OTTXeN1tLzIMok4,16536
-pychemstation/analysis/spec_utils.py,sha256=UOo9hJR3evJfmaohEEsyb7aq6X996ofuUfu-GKjiDi8,10201
-pychemstation/analysis/utils.py,sha256=ISupAOb_yqA4_DZRK9v18UL-XjUQccAicIJKb1VMnGg,2055
-pychemstation/control/__init__.py,sha256=4xTy8X-mkn_PPZKr7w9rnj1wZhtmTesbQptPhpYmKXs,64
-pychemstation/control/comm.py,sha256=u44g1hTluQ0yUG93Un-QAshScoDpgYRrZfFTgweP5tY,7386
-pychemstation/control/hplc.py,sha256=5xC5q-hrAn5hKdz-ZwT_Dlas9LWLV27jZvhCKj7Lzg4,8761
-pychemstation/control/controllers/__init__.py,sha256=di3ytLIK-35XC_THw4IjNaOtCUTe7GuEOFb-obmREw4,166
-pychemstation/control/controllers/comm.py,sha256=IU4I_Q42VNCNUlVi93MxCmw2EBY9hiBDkU9FxubKg3c,7441
-pychemstation/control/controllers/method.py,sha256=XUclB7lQ_SIkquR58MBmmi9drHIPEq9AR8VprTLenvI,15503
-pychemstation/control/controllers/sequence.py,sha256=kYNxxck2I-q9mZDEZwG8bJ_99FfLmunS13EAHOS65wU,8288
-pychemstation/control/controllers/table_controller.py,sha256=ItuNJ3aQqx73rviGVXs7vYaZKA9icPFreOUuUZupqB4,11029
-pychemstation/control/table/__init__.py,sha256=RgMN4uIWHdNUHpGRBWdzmzAbk7XEKl6Y-qtqWCxzSZU,124
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-pychemstation/control/table/table_controller.py,sha256=HVNYUXqtyFTAvb67fa3RO5RHgmBTFMsYRHKpiXdYcfs,8313
-pychemstation/generated/__init__.py,sha256=GAoZFAYbPVEJDkcOw3e1rgOqd7TCW0HyKNPM8OMehMg,1005
-pychemstation/generated/dad_method.py,sha256=0W8Z5WDtF5jpIcudMqb7XrkTnR2EGg_QOCsHRFQ0rmM,8402
-pychemstation/generated/pump_method.py,sha256=sUhE2Oo00nzVcoONtq3EMWsN4wLSryXbG8f3EeViWKg,12174
-pychemstation/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-pychemstation/utils/chromatogram.py,sha256=-q3_hL9GTyi4C95os7IwAiOrkTM4EXIiigm-nW9pFmM,3221
-pychemstation/utils/macro.py,sha256=a6M6iK6c56Z75Opr2a-gsLKvMMpShu05DwcBYn5aTUs,2778
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-pychemstation/utils/parsing.py,sha256=bnFIsZZwFy9NKzVUf517yN-ogzQbm0hp_aho3KUD6Is,9317
-pychemstation/utils/sequence_types.py,sha256=OhbmBUS7XQOKHC8YLjgbEVdpjriEc1bORkwB5ZV43oA,1063
-pychemstation/utils/table_types.py,sha256=HVE_tuM2TUED843iXvZqtONt8Eeolm6B5eciq60ZjR8,2521
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-tests/constants.py,sha256=iU6knsNpQGnBfGcC8VAj5SrCDcHD3jBZLhQdF6UUwY4,2452
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-pychemstation-0.5.11.dist-info/LICENSE,sha256=9bdF75gIf1MecZ7oymqWgJREVz7McXPG-mjqrTmzzD8,18658
-pychemstation-0.5.11.dist-info/METADATA,sha256=K1Hd9ry_rHoZ67yHBIjwuxwI8ooUp4ntAlDLZiI8rsA,4330
-pychemstation-0.5.11.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
-pychemstation-0.5.11.dist-info/top_level.txt,sha256=zXfKu_4nYWwPHo3OsuhshMNC3SPkcoTGCyODjURaghY,20
-pychemstation-0.5.11.dist-info/RECORD,,