pybioos 0.0.4__py3-none-any.whl → 0.0.6__py3-none-any.whl
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- bioos/__about__.py +1 -1
- bioos/bioos_workflow.py +12 -8
- {pybioos-0.0.4.dist-info → pybioos-0.0.6.dist-info}/METADATA +2 -2
- {pybioos-0.0.4.dist-info → pybioos-0.0.6.dist-info}/RECORD +8 -8
- {pybioos-0.0.4.dist-info → pybioos-0.0.6.dist-info}/LICENSE +0 -0
- {pybioos-0.0.4.dist-info → pybioos-0.0.6.dist-info}/WHEEL +0 -0
- {pybioos-0.0.4.dist-info → pybioos-0.0.6.dist-info}/entry_points.txt +0 -0
- {pybioos-0.0.4.dist-info → pybioos-0.0.6.dist-info}/top_level.txt +0 -0
bioos/__about__.py
CHANGED
bioos/bioos_workflow.py
CHANGED
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@@ -82,14 +82,13 @@ class Bioos_workflow:
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# skip existed file upload
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if not force and target in uploaded_files:
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self.logger.info(f"Skip tos existed file {value}")
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self.logger.info(f"Finish upload {value}.")
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else:
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# 这里的target是prefix
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self.logger.info(f"Start upload {value}.")
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self.ws.files.upload(value,
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target="input_provision/",
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flatten=True)
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self.logger.info(f"Finish upload {value}.")
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s3_location = self.ws.files.s3_urls(target)[0]
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update_dict[key] = s3_location
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@@ -292,4 +291,9 @@ def bioos_workflow():
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bw.monitor_workflow()
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time.sleep(60)
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bw.logger.info("Submission finished. Print final status for runs.")
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print(bw.runs)
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bw.logger.info("Start to postprocess.")
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bw.postprocess(download=parsed_args.download_results)
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bw.logger.info("Postprocess finished.")
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@@ -1,7 +1,7 @@
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1
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bioos/__about__.py,sha256=
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bioos/__about__.py,sha256=6c7X3ThTtu9hGlmyqd4INLPcK6ABrCwlVEd7i0BVvAw,56
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bioos/__init__.py,sha256=4GZKi13lDTD25YBkGakhZyEQZWTER_OWQMNPoH_UM2c,22
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bioos/bioos.py,sha256=fHzOb1l5wYxw6NVYYZDiFcgk4V28BAgWEc3ev12reWs,2409
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bioos/bioos_workflow.py,sha256=
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bioos/bioos_workflow.py,sha256=MC3Bbu7t-sT7bTFd5hZaObNVctm_IBCoDBphv6kdRS8,10266
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bioos/config.py,sha256=CvFabYqV1BkFWO8fnr5vBf6xNtNzA8hAEVeEIbvAOm8,4307
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bioos/errors.py,sha256=Lzz2rkjDOTR2X9CnVkmsmqeOgmNqbi46WAxnC6LEGm0,2459
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bioos/log.py,sha256=twiCvf5IgJB7uvzANwBluSlztJN8ZrxbGZUBGlZ0vps,3204
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@@ -30,9 +30,9 @@ bioos/tests/workspaces.py,sha256=LuuRrTs2XqfE5mGQyJNl9RBtuMb4NZHBJFoO8HMZVYQ,522
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bioos/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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bioos/utils/common_tools.py,sha256=fgMoE_-qZjgfQtUj_pmCTyYDtbJasyfH4Gm3VQsbgBQ,1651
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bioos/utils/workflows.py,sha256=zRbwTUigoM5V5LFOgzQPm3kwxt5Ogz95OFfefJc6Fjo,133
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pybioos-0.0.
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pybioos-0.0.
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pybioos-0.0.
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pybioos-0.0.
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pybioos-0.0.
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pybioos-0.0.
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pybioos-0.0.6.dist-info/LICENSE,sha256=cPkGXsgfPgEhIns7Lt3Avxx0Uy-VbdsoP8jvNGuj3cE,1063
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pybioos-0.0.6.dist-info/METADATA,sha256=nAXmL2xb2kkLiBNi93ex3efK-381AcVuvb6RdyfzWrk,770
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pybioos-0.0.6.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
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pybioos-0.0.6.dist-info/entry_points.txt,sha256=8TRx1zyu7ja3x5RNaeFxeiYTj_-tiWydbuSulxi3TM0,59
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pybioos-0.0.6.dist-info/top_level.txt,sha256=llpzydkKVDSaWZgz3bsTUsQmhoQpc_JcRJg2-H-5a2U,6
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pybioos-0.0.6.dist-info/RECORD,,
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File without changes
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File without changes
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File without changes
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File without changes
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