pybioos 0.0.16__py3-none-any.whl → 0.0.18__py3-none-any.whl

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bioos/__about__.py CHANGED
@@ -1,4 +1,4 @@
1
1
  # coding:utf-8
2
2
 
3
3
  # Package version
4
- __version__ = "0.0.16"
4
+ __version__ = "0.0.18"
bioos/bioos.py CHANGED
@@ -1,7 +1,7 @@
1
1
  from pandas import DataFrame
2
2
  from volcengine.const.Const import REGION_CN_NORTH1
3
3
 
4
- from bioos.config import Config
4
+ from bioos.config import Config,DEFAULT_ENDPOINT
5
5
  from bioos.resource.utility import UtilityResource
6
6
  from bioos.resource.workspaces import Workspace
7
7
 
@@ -20,9 +20,9 @@ def status() -> Config.LoginInfo:
20
20
  return Config.login_info()
21
21
 
22
22
 
23
- def login(endpoint: str,
24
- access_key: str,
23
+ def login(access_key: str,
25
24
  secret_key: str,
25
+ endpoint: str = DEFAULT_ENDPOINT,
26
26
  region: str = REGION_CN_NORTH1) -> bool:
27
27
  """Login to the given endpoint using specified account and password.
28
28
 
@@ -35,14 +35,16 @@ def login(endpoint: str,
35
35
  *Example*:
36
36
  ::
37
37
 
38
- bioos.login(endpoint="https://cloud.xxxxx.xxx.cn",access_key="xxxxxxxx",secret_key="xxxxxxxx")
38
+ bioos.login(access_key="xxxxxxxx", secret_key="xxxxxxxx")
39
+ # or specify endpoint explicitly:
40
+ bioos.login(access_key="xxxxxxxx", secret_key="xxxxxxxx", endpoint="https://cloud.xxxxx.xxx.cn")
39
41
 
40
- :param endpoint: The environment to be logged in
41
- :type endpoint: str
42
42
  :param access_key: The specified account's access key
43
43
  :type access_key: str
44
44
  :param secret_key: Corresponding secret key of the access key
45
45
  :type secret_key: str
46
+ :param endpoint: The environment to be logged in (optional, defaults to Config._endpoint)
47
+ :type endpoint: str
46
48
  :param region: The region to be logged in
47
49
  :type region: str
48
50
  :return: Login result
@@ -50,7 +52,8 @@ def login(endpoint: str,
50
52
  """
51
53
  Config.set_access_key(access_key)
52
54
  Config.set_secret_key(secret_key)
53
- Config.set_endpoint(endpoint)
55
+ if endpoint is not None:
56
+ Config.set_endpoint(endpoint)
54
57
  Config.set_region(region)
55
58
  return Config.login_info().login_status == "Already logged in"
56
59
 
@@ -70,6 +73,28 @@ def list_workspaces() -> DataFrame:
70
73
  }).get("Items"))
71
74
 
72
75
 
76
+ def create_workspace(name: str, description: str) -> dict:
77
+ """Creates a new workspace in the login environment.
78
+
79
+ *Example*:
80
+ ::
81
+
82
+ bioos.create_workspace(name="My Workspace", description="This is my new workspace")
83
+
84
+ :param name: Name of the workspace to create
85
+ :type name: str
86
+ :param description: Description of the workspace
87
+ :type description: str
88
+ :return: Creation result containing workspace information
89
+ :rtype: dict
90
+ """
91
+ params = {
92
+ "Name": name,
93
+ "Description": description
94
+ }
95
+ return Config.service().create_workspace(params)
96
+
97
+
73
98
  def workspace(id_: str) -> Workspace: # 这里是workspace的入口
74
99
  """Returns the workspace for the given name .
75
100
 
bioos/bioos_workflow.py CHANGED
@@ -10,6 +10,7 @@ import pandas as pd
10
10
 
11
11
  from bioos import bioos
12
12
  from bioos.errors import NotFoundError, ParameterError
13
+ from bioos.config import DEFAULT_ENDPOINT
13
14
 
14
15
  def uniquify_columns(cols: list[str]) -> list[str]:
15
16
  seen, out = {}, []
@@ -177,7 +178,8 @@ class Bioos_workflow:
177
178
  data_model_name: str = "dm",
178
179
  submission_desc: str = "Submit by pybioos",
179
180
  call_caching: bool = True,
180
- force_reupload: bool = False):
181
+ force_reupload: bool = False,
182
+ mount_tos: bool = False):
181
183
  if not os.path.isfile(input_json_file):
182
184
  raise ParameterError('Input_json_file is not found.')
183
185
  #给每一个data_model加一个uuid,保证不重复
@@ -228,6 +230,7 @@ class Bioos_workflow:
228
230
  "outputs": "{}",
229
231
  "submission_desc": submission_desc,
230
232
  "call_caching": call_caching,
233
+ "mount_tos": mount_tos,
231
234
  }
232
235
 
233
236
  # if the input json is a batch or singleton submission
@@ -323,7 +326,7 @@ def bioos_workflow():
323
326
  parser.add_argument("--endpoint",
324
327
  type=str,
325
328
  help="Bio-OS instance platform endpoint",
326
- default="https://bio-top.miracle.ac.cn")
329
+ default=DEFAULT_ENDPOINT)
327
330
  parser.add_argument(
328
331
  "--ak",
329
332
  type=str,
@@ -362,6 +365,12 @@ def bioos_workflow():
362
365
  action='store_true',
363
366
  help="Force reupolad tos existed files.")
364
367
 
368
+ parser.add_argument(
369
+ "--mount_tos",
370
+ action='store_true',
371
+ help="是否挂载tos",
372
+ default=False)
373
+
365
374
  parser.add_argument(
366
375
  "--monitor",
367
376
  action='store_true',
@@ -393,7 +402,8 @@ def bioos_workflow():
393
402
  data_model_name=parsed_args.data_model_name,
394
403
  submission_desc=parsed_args.submission_desc,
395
404
  call_caching=parsed_args.call_caching,
396
- force_reupload=parsed_args.force_reupload)
405
+ force_reupload=parsed_args.force_reupload,
406
+ mount_tos=parsed_args.mount_tos)
397
407
  bw.submit_workflow_bioosapi()
398
408
 
399
409
  # moniter
bioos/bw_import.py CHANGED
@@ -1,17 +1,13 @@
1
1
  #!/usr/bin/env python3
2
2
  # coding: utf-8
3
-
4
3
  import argparse
5
4
  import logging
6
5
  import os
7
6
  import sys
8
7
  import time
9
-
10
8
  from bioos import bioos
11
- from bioos.config import Config
9
+ from bioos.config import Config, DEFAULT_ENDPOINT
12
10
  from bioos.resource.workflows import WorkflowResource
13
-
14
-
15
11
  def get_logger():
16
12
  """Setup logger"""
17
13
  logger = logging.getLogger('bw_import')
@@ -23,14 +19,11 @@ def get_logger():
23
19
  logger.addHandler(handler)
24
20
  logger.setLevel(logging.INFO)
25
21
  return logger
26
-
27
-
28
22
  def bioos_workflow_import():
29
23
  """Command line entry point"""
30
24
  parser = argparse.ArgumentParser(
31
25
  description='Bio-OS Workflow Import Tool',
32
26
  formatter_class=argparse.RawDescriptionHelpFormatter)
33
-
34
27
  # 必需参数
35
28
  parser.add_argument(
36
29
  '--ak',
@@ -49,8 +42,10 @@ def bioos_workflow_import():
49
42
  parser.add_argument('--workflow_source',
50
43
  required=True,
51
44
  help='Local WDL file path or git repository URL')
52
-
53
45
  # 可选参数
46
+ parser.add_argument('--endpoint',
47
+ help='Bio-OS instance platform endpoint',
48
+ default=DEFAULT_ENDPOINT)
54
49
  parser.add_argument('--workflow_desc',
55
50
  help='Description for the workflow',
56
51
  default='')
@@ -67,16 +62,13 @@ def bioos_workflow_import():
67
62
  type=int,
68
63
  default=60,
69
64
  help='Time interval in seconds for checking workflow status')
70
-
71
65
  args = parser.parse_args()
72
66
  logger = get_logger()
73
-
74
67
  try:
75
68
  # 配置Bio-OS
76
69
  Config.set_access_key(args.ak)
77
70
  Config.set_secret_key(args.sk)
78
- Config.set_endpoint("https://bio-top.miracle.ac.cn")
79
-
71
+ Config.set_endpoint(args.endpoint)
80
72
  # 获取workspace ID
81
73
  workspaces = bioos.list_workspaces()
82
74
  workspace_info = workspaces.query(f"Name=='{args.workspace_name}'")
@@ -84,10 +76,8 @@ def bioos_workflow_import():
84
76
  logger.error(f"Workspace {args.workspace_name} not found")
85
77
  sys.exit(1)
86
78
  workspace_id = workspace_info["ID"].iloc[0]
87
-
88
79
  # 创建WorkflowResource实例
89
80
  workflow_resource = WorkflowResource(workspace_id)
90
-
91
81
  # 导入workflow
92
82
  try:
93
83
  result = workflow_resource.import_workflow(
@@ -99,19 +89,15 @@ def bioos_workflow_import():
99
89
  logger.info(
100
90
  f"Successfully uploaded workflow: {result}, validating..., please wait..."
101
91
  )
102
-
103
92
  # 如果设置了monitor参数,则监控工作流状态
104
93
  if args.monitor:
105
94
  max_retries = 10 # 最大重试次数
106
95
  retry_count = 0
107
-
108
96
  while retry_count < max_retries:
109
97
  df = workflow_resource.list()
110
98
  workflow_info = df[df.Name == args.workflow_name]
111
-
112
99
  if len(workflow_info) == 1:
113
100
  status = workflow_info.iloc[0]["Status"]["Phase"]
114
-
115
101
  if status == "Succeeded":
116
102
  logger.info(
117
103
  f"Workflow {args.workflow_name} validated successfully"
@@ -138,7 +124,6 @@ def bioos_workflow_import():
138
124
  f"Workflow {args.workflow_name} not found after import"
139
125
  )
140
126
  sys.exit(1)
141
-
142
127
  logger.error(
143
128
  f"Workflow validation timeout after {max_retries} retries")
144
129
  sys.exit(1)
@@ -148,15 +133,11 @@ def bioos_workflow_import():
148
133
  f"Workflow {args.workflow_name} is still validating, {result}, please wait and check the status later."
149
134
  )
150
135
  sys.exit(0)
151
-
152
136
  except Exception as e:
153
137
  logger.error(f"Failed to import workflow: {str(e)}")
154
138
  sys.exit(1)
155
-
156
139
  except Exception as e:
157
140
  logger.error(f"Error: {str(e)}")
158
141
  sys.exit(1)
159
-
160
-
161
142
  if __name__ == '__main__':
162
143
  bioos_workflow_import()
@@ -6,7 +6,7 @@ import logging
6
6
  import sys
7
7
 
8
8
  from bioos import bioos
9
- from bioos.config import Config
9
+ from bioos.config import Config, DEFAULT_ENDPOINT
10
10
  from bioos.resource.workflows import WorkflowResource
11
11
 
12
12
 
@@ -44,6 +44,11 @@ def bioos_workflow_status_check():
44
44
  parser.add_argument('--workflow_id',
45
45
  required=True,
46
46
  help='ID of the workflow to check')
47
+
48
+ # 可选参数
49
+ parser.add_argument('--endpoint',
50
+ help='Bio-OS instance platform endpoint',
51
+ default=DEFAULT_ENDPOINT)
47
52
 
48
53
  args = parser.parse_args()
49
54
  logger = get_logger()
@@ -52,7 +57,7 @@ def bioos_workflow_status_check():
52
57
  # 配置Bio-OS
53
58
  Config.set_access_key(args.ak)
54
59
  Config.set_secret_key(args.sk)
55
- Config.set_endpoint("https://bio-top.miracle.ac.cn")
60
+ Config.set_endpoint(args.endpoint)
56
61
 
57
62
  # 获取workspace ID
58
63
  workspaces = bioos.list_workspaces()
bioos/bw_status_check.py CHANGED
@@ -6,7 +6,7 @@ import logging
6
6
  import sys
7
7
 
8
8
  from bioos import bioos
9
- from bioos.config import Config
9
+ from bioos.config import Config, DEFAULT_ENDPOINT
10
10
  from bioos.resource.workflows import WorkflowResource
11
11
 
12
12
 
@@ -44,6 +44,11 @@ def bioos_workflow_status_check():
44
44
  parser.add_argument('--submission_id',
45
45
  required=True,
46
46
  help='ID of the submission to check')
47
+
48
+ # 可选参数
49
+ parser.add_argument('--endpoint',
50
+ help='Bio-OS instance platform endpoint',
51
+ default=DEFAULT_ENDPOINT)
47
52
 
48
53
  args = parser.parse_args()
49
54
  logger = get_logger()
@@ -52,7 +57,7 @@ def bioos_workflow_status_check():
52
57
  # 配置Bio-OS
53
58
  Config.set_access_key(args.ak)
54
59
  Config.set_secret_key(args.sk)
55
- Config.set_endpoint("https://bio-top.miracle.ac.cn")
60
+ Config.set_endpoint(args.endpoint)
56
61
 
57
62
  # 获取workspace ID
58
63
  workspaces = bioos.list_workspaces()
bioos/config.py CHANGED
@@ -7,6 +7,9 @@ from bioos.errors import ConfigurationError
7
7
  from bioos.log import PyLogger
8
8
  from bioos.service.BioOsService import BioOsService
9
9
 
10
+ # 默认的 Bio-OS endpoint
11
+ DEFAULT_ENDPOINT = "https://bio-top.miracle.ac.cn"
12
+
10
13
  LOGIN_STATUS = Literal['Already logged in', 'Not logged in']
11
14
 
12
15
 
@@ -14,7 +17,7 @@ class Config:
14
17
  _service: BioOsService = None
15
18
  _access_key: str = os.environ.get('VOLC_ACCESSKEY')
16
19
  _secret_key: str = os.environ.get('VOLC_SECRETKEY')
17
- _endpoint: str = os.environ.get('BIOOS_ENDPOINT')
20
+ _endpoint: str = os.environ.get('BIOOS_ENDPOINT', DEFAULT_ENDPOINT)
18
21
  _region: str = REGION_CN_NORTH1
19
22
  Logger = PyLogger() # 这里是把类赋给了Logger变量
20
23
 
@@ -7,7 +7,7 @@ import os
7
7
  import sys
8
8
 
9
9
  from bioos import bioos
10
- from bioos.config import Config
10
+ from bioos.config import Config, DEFAULT_ENDPOINT
11
11
 
12
12
 
13
13
  def get_logger():
@@ -48,6 +48,11 @@ def get_submission_logs():
48
48
  '--output_dir',
49
49
  default='.',
50
50
  help='Local directory to save the logs (default: current directory)')
51
+
52
+ # 可选参数
53
+ parser.add_argument('--endpoint',
54
+ help='Bio-OS instance platform endpoint',
55
+ default=DEFAULT_ENDPOINT)
51
56
 
52
57
  args = parser.parse_args()
53
58
  logger = get_logger()
@@ -56,7 +61,7 @@ def get_submission_logs():
56
61
  # 配置Bio-OS
57
62
  Config.set_access_key(args.ak)
58
63
  Config.set_secret_key(args.sk)
59
- Config.set_endpoint("https://bio-top.miracle.ac.cn")
64
+ Config.set_endpoint(args.endpoint)
60
65
 
61
66
  # 获取workspace ID
62
67
  workspaces = bioos.list_workspaces()
@@ -795,7 +795,8 @@ class Workflow(metaclass=SingletonType):
795
795
  call_caching: bool,
796
796
  submission_name_suffix: str = "",
797
797
  row_ids: List[str] = [],
798
- data_model_name: str = '') -> List[Run]:
798
+ data_model_name: str = '',
799
+ mount_tos: bool = False) -> List[Run]:
799
800
  """Submit an existed workflow.
800
801
 
801
802
  *Example*:
@@ -846,6 +847,7 @@ class Workflow(metaclass=SingletonType):
846
847
  'Inputs': inputs,
847
848
  'ExposedOptions': {
848
849
  "ReadFromCache": call_caching,
850
+ "MountTOS": mount_tos,
849
851
  # TODO this may change in the future
850
852
  "ExecutionRootDir": f"s3://{self.bucket}"
851
853
  },
@@ -121,3 +121,8 @@ class Workspace(metaclass=SingletonType):
121
121
  if not self._bucket:
122
122
  self._bucket = self.basic_info.get("s3_bucket")
123
123
  return Workflow(name, self._id, self._bucket)
124
+
125
+ def bind_cluster(self, cluster_id: str, type_: str = "workflow") -> dict:
126
+ """把当前 Workspace 绑定到指定集群"""
127
+ params = {"ClusterID": cluster_id, "Type": type_, "ID": self._id}
128
+ return Config.service().bind_cluster_to_workspace(params)
@@ -47,6 +47,11 @@ class BioOsService(Service):
47
47
  'Action': 'ListWorkspaces',
48
48
  'Version': '2021-03-04'
49
49
  }, {}, {}),
50
+ 'CreateWorkspace':
51
+ ApiInfo('POST', '/', {
52
+ 'Action': 'CreateWorkspace',
53
+ 'Version': '2021-03-04'
54
+ }, {}, {}),
50
55
  'CreateDataModel':
51
56
  ApiInfo('POST', '/', {
52
57
  'Action': 'CreateDataModel',
@@ -127,12 +132,19 @@ class BioOsService(Service):
127
132
  'Action': 'DeleteWorkflow',
128
133
  'Version': '2021-03-04'
129
134
  }, {}, {}),
135
+ 'BindClusterToWorkspace':
136
+ ApiInfo('POST', '/', {
137
+ 'Action': 'BindClusterToWorkspace',
138
+ 'Version': '2021-03-04'
139
+ }, {}, {}),
130
140
  }
131
141
  return api_info
132
142
 
133
143
  def list_workspaces(self, params): # 以下各方法的params需要在外部使用时构建
134
144
  return self.__request('ListWorkspaces', params)
135
145
 
146
+ def create_workspace(self, params):
147
+ return self.__request('CreateWorkspace', params)
136
148
  def create_data_model(self, params):
137
149
  return self.__request('CreateDataModel', params)
138
150
 
@@ -181,6 +193,9 @@ class BioOsService(Service):
181
193
  def delete_workflow(self, params):
182
194
  return self.__request("DeleteWorkflow", params)
183
195
 
196
+ def bind_cluster_to_workspace(self, params):
197
+ return self.__request("BindClusterToWorkspace", params)
198
+
184
199
  def __request(self, action, params):
185
200
  res = self.json(
186
201
  action, dict(),
bioos/workflow_info.py CHANGED
@@ -2,14 +2,13 @@ from typing import Dict, Any, List, Optional
2
2
  import pandas as pd
3
3
 
4
4
  from bioos import bioos
5
- from bioos.config import Config
5
+ from bioos.config import Config, DEFAULT_ENDPOINT
6
6
  from bioos.errors import NotFoundError
7
7
 
8
-
9
8
  class WorkflowInfo:
10
9
  """Bio-OS 工作流信息查询类"""
11
10
 
12
- def __init__(self, ak: str, sk: str, endpoint: str = "https://bio-top.miracle.ac.cn"):
11
+ def __init__(self, ak: str, sk: str, endpoint: str = DEFAULT_ENDPOINT):
13
12
  """
14
13
  初始化工作流信息查询类
15
14
 
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: pybioos
3
- Version: 0.0.16
3
+ Version: 0.0.18
4
4
  Summary: BioOS SDK for Python
5
5
  Home-page: https://github.com/GBA-BI/pybioos
6
6
  Author: Jilong Liu
@@ -13,13 +13,15 @@ Classifier: Intended Audience :: Science/Research
13
13
  Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
14
14
  Classifier: Topic :: Scientific/Engineering :: Interface Engine/Protocol Translator
15
15
  License-File: LICENSE
16
- Requires-Dist: volcengine >=1.0.61
17
- Requires-Dist: tabulate >=0.8.10
18
- Requires-Dist: click >=8.0.0
19
- Requires-Dist: pandas >=1.3.0
20
- Requires-Dist: tos ==2.5.6
21
- Requires-Dist: cachetools >=5.2.0
22
- Requires-Dist: typing-extensions >=4.4.0
23
- Requires-Dist: apscheduler >=3.10.4
24
- Requires-Dist: colorama >=0.4.6
16
+ Requires-Dist: volcengine (>=1.0.61)
17
+ Requires-Dist: tabulate (>=0.8.10)
18
+ Requires-Dist: click (>=8.0.0)
19
+ Requires-Dist: pandas (>=1.3.0)
20
+ Requires-Dist: tos (==2.5.6)
21
+ Requires-Dist: cachetools (>=5.2.0)
22
+ Requires-Dist: typing-extensions (>=4.4.0)
23
+ Requires-Dist: apscheduler (>=3.10.4)
24
+ Requires-Dist: colorama (>=0.4.6)
25
+
26
+ UNKNOWN
25
27
 
@@ -1,15 +1,15 @@
1
- bioos/__about__.py,sha256=TRnHZsxI7bVBqxAdnBiKbEhtnboUzdISbOREW1kz-io,56
1
+ bioos/__about__.py,sha256=YQNxIWM75-mGePypUWLizOs5j9z-3m-wmI5X1hBjL0g,57
2
2
  bioos/__init__.py,sha256=4GZKi13lDTD25YBkGakhZyEQZWTER_OWQMNPoH_UM2c,22
3
- bioos/bioos.py,sha256=fHzOb1l5wYxw6NVYYZDiFcgk4V28BAgWEc3ev12reWs,2409
4
- bioos/bioos_workflow.py,sha256=BgooweeFT4O7SyProup2gOVSeXDb3pXWge--PD7J-lE,15232
5
- bioos/bw_import.py,sha256=lQk_ch_tTz8l4bnWniOzWZ1IxI6ZvKlaASkNMsdDGfA,5697
6
- bioos/bw_import_status_check.py,sha256=sJuso2SAfZWvPzypnGge25Ayv5PsSGRXqSNNwIhNu-E,2794
7
- bioos/bw_status_check.py,sha256=FVilkawRA7GD1JXUBeaR28W1DfN9bAzYBIAjqi4JIno,2916
8
- bioos/config.py,sha256=CvFabYqV1BkFWO8fnr5vBf6xNtNzA8hAEVeEIbvAOm8,4307
3
+ bioos/bioos.py,sha256=fFnbtwOyF5U3N_D41jXPYB2H4xKBsI931nS-qBUFW70,3231
4
+ bioos/bioos_workflow.py,sha256=s_5lEFclHf3ZAtmIPRYcizQU5sEsc-Zm6FGP89_wL8g,15525
5
+ bioos/bw_import.py,sha256=kYS4BDbyIXyaFIOCUyOnAzIbLdHvY3l3KLPDVfAnFSM,5829
6
+ bioos/bw_import_status_check.py,sha256=x9Y_0I8huoC7aBgObuox-0z6foSr99TXQB7jozyQ7Eo,2972
7
+ bioos/bw_status_check.py,sha256=Etj_zp6tS0cj4t-nksUq221pPIWUFS0Lz0q0Uqflpes,3094
8
+ bioos/config.py,sha256=-1qS0uYgV-h3d67LyOuJ3lzDskEytXHI7T65-p8tnhA,4405
9
9
  bioos/errors.py,sha256=p0fH6JSMYBjul88lMJ7PPwGNh4SYg62-7VMNuUXWl-E,2540
10
- bioos/get_submission_logs.py,sha256=jUtT8Vic8h_VOcqrqJsTBSonve64RjbKNAyp0wUtIpg,3934
10
+ bioos/get_submission_logs.py,sha256=e0OlWwMso8bB6u1TepJpRim2L-trxM6x3IdgZSwo7jc,4112
11
11
  bioos/log.py,sha256=twiCvf5IgJB7uvzANwBluSlztJN8ZrxbGZUBGlZ0vps,3204
12
- bioos/workflow_info.py,sha256=bE9h1pE7Co8icS-J5WVHfSAbjef9EtLhpWjbHQcnFfc,6838
12
+ bioos/workflow_info.py,sha256=5PT45Lv-Js84ljZxjb9uNl0Jd5l-LYnXyKHYKrOhcjI,6840
13
13
  bioos/internal/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
14
14
  bioos/internal/tos.py,sha256=0R6YN2lxjjZsuMfv0yLSkBmz_LqmzQGb8GagnUMc8EY,12264
15
15
  bioos/models/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
@@ -18,9 +18,9 @@ bioos/resource/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
18
18
  bioos/resource/data_models.py,sha256=enKp8yyQI8IbRqe--0Xtyg1XzOwQQPQzoQsx_hNuZ6E,5089
19
19
  bioos/resource/files.py,sha256=1HY0IHvq8H843VM2XZIHDdCuXXNcMrlEFhSNqWXmFzE,8456
20
20
  bioos/resource/utility.py,sha256=emY7qVLLLvGmQYlVj-_bLAxU7i1GfQOUybdRkfEDwVA,1300
21
- bioos/resource/workflows.py,sha256=RZkREd7EzyRqk3gP09HSzeuI3i7Cn7VMhqjp4jj_cjg,29418
22
- bioos/resource/workspaces.py,sha256=Gmr8y_sjK7TQbhMhQ_7rxqR1KFcwU72I95YYCFrrLBQ,3995
23
- bioos/service/BioOsService.py,sha256=HuYUEwomHCLpA1MYgVqGyWAQWHM-_BHB-jmy9VsOlnQ,6724
21
+ bioos/resource/workflows.py,sha256=OZ1RRedls4wirri_Ts5dP9IX0XqJA2pwA-_UxORrc-M,29497
22
+ bioos/resource/workspaces.py,sha256=HZCdMzfpSZMm6x9cHDuAXCv-CTCoaVjfQ6EGz-Rek1g,4269
23
+ bioos/service/BioOsService.py,sha256=yXUo6PKaMv8V-SleIwedKtV8aTC3dhESWH2lxL7jY7A,7299
24
24
  bioos/service/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
25
25
  bioos/service/api.py,sha256=Khihn187bACEfBcJ-tRS9JO29-VCBsH0-9qq-i5WxkQ,8737
26
26
  bioos/service/config.py,sha256=FbBsb6CpcLsQZH7n8uuUbFVhkpqYOEnOe0xGkA7ZrjA,1009
@@ -35,9 +35,9 @@ bioos/tests/workspaces.py,sha256=LuuRrTs2XqfE5mGQyJNl9RBtuMb4NZHBJFoO8HMZVYQ,522
35
35
  bioos/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
36
36
  bioos/utils/common_tools.py,sha256=fgMoE_-qZjgfQtUj_pmCTyYDtbJasyfH4Gm3VQsbgBQ,1651
37
37
  bioos/utils/workflows.py,sha256=zRbwTUigoM5V5LFOgzQPm3kwxt5Ogz95OFfefJc6Fjo,133
38
- pybioos-0.0.16.dist-info/LICENSE,sha256=cPkGXsgfPgEhIns7Lt3Avxx0Uy-VbdsoP8jvNGuj3cE,1063
39
- pybioos-0.0.16.dist-info/METADATA,sha256=9M9p2P6lr9kiUB1KIQ15MZPIADDBFhw8YD1Zjho1oBk,803
40
- pybioos-0.0.16.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
41
- pybioos-0.0.16.dist-info/entry_points.txt,sha256=O-8Gg-zLuYcnOYbx1BMqAgEsoEZfKwtM19cUctHuYus,327
42
- pybioos-0.0.16.dist-info/top_level.txt,sha256=llpzydkKVDSaWZgz3bsTUsQmhoQpc_JcRJg2-H-5a2U,6
43
- pybioos-0.0.16.dist-info/RECORD,,
38
+ pybioos-0.0.18.dist-info/LICENSE,sha256=cPkGXsgfPgEhIns7Lt3Avxx0Uy-VbdsoP8jvNGuj3cE,1063
39
+ pybioos-0.0.18.dist-info/METADATA,sha256=XJyGrHDGUm0WmQ4hGLx4l59ImW38IpFplODIlLHZCPI,830
40
+ pybioos-0.0.18.dist-info/WHEEL,sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA,92
41
+ pybioos-0.0.18.dist-info/entry_points.txt,sha256=Sc5H0_X7r03Mef4Qd70bebqgdIbVAxLU7nV7qP7cKD4,328
42
+ pybioos-0.0.18.dist-info/top_level.txt,sha256=llpzydkKVDSaWZgz3bsTUsQmhoQpc_JcRJg2-H-5a2U,6
43
+ pybioos-0.0.18.dist-info/RECORD,,
@@ -1,5 +1,5 @@
1
1
  Wheel-Version: 1.0
2
- Generator: bdist_wheel (0.42.0)
2
+ Generator: bdist_wheel (0.36.2)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any
5
5
 
@@ -4,3 +4,4 @@ bw_import = bioos.bw_import:bioos_workflow_import
4
4
  bw_import_status_check = bioos.bw_import_status_check:bioos_workflow_status_check
5
5
  bw_status_check = bioos.bw_status_check:bioos_workflow_status_check
6
6
  get_submission_logs = bioos.get_submission_logs:get_submission_logs
7
+