pybiolib 1.2.888__py3-none-any.whl → 1.2.902__py3-none-any.whl

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Files changed (7) hide show
  1. biolib/_internal/push_application.py +2 -0
  2. biolib/_internal/templates/init_template/run.py +6 -15
  3. {pybiolib-1.2.888.dist-info → pybiolib-1.2.902.dist-info}/METADATA +1 -1
  4. {pybiolib-1.2.888.dist-info → pybiolib-1.2.902.dist-info}/RECORD +7 -7
  5. {pybiolib-1.2.888.dist-info → pybiolib-1.2.902.dist-info}/LICENSE +0 -0
  6. {pybiolib-1.2.888.dist-info → pybiolib-1.2.902.dist-info}/WHEEL +0 -0
  7. {pybiolib-1.2.888.dist-info → pybiolib-1.2.902.dist-info}/entry_points.txt +0 -0
biolib/_internal/push_application.py CHANGED
@@ -149,6 +149,8 @@ def _process_docker_status_updates_with_logging(status_updates: Iterable[DockerS
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  last_log_time = current_time
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  _log_progress_summary(action, layer_progress, layer_status)
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+ if action == 'Pushing':
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+ logger.info('Pushing final image manifest...')
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  logger.info(f'{action} Docker image completed')
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biolib/_internal/templates/init_template/run.py CHANGED
@@ -2,20 +2,11 @@ import argparse
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  from biolib.sdk import Runtime
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+ parser = argparse.ArgumentParser(description='Process some biological sequences.')
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+ parser.add_argument('--input', type=str, required=True, help='Input protein sequences')
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+ args = parser.parse_args()
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- def parse_args():
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- parser = argparse.ArgumentParser(description='Process some biological sequences.')
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- parser.add_argument('--input', type=str, required=True, help='Input protein sequences')
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- return parser.parse_args()
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+ # update the BioLib result name based on the provided file
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+ Runtime.set_result_name_from_file(args.input)
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-
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- def main(args):
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- sequence = args.input
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- # Add your processing logic here
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- print(f'Received sequence: {sequence}')
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-
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-
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- if __name__ == '__main__':
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- args = parse_args()
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- Runtime.set_result_name_prefix_from_fasta(args.input)
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- main(args)
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+ print(f'Processing input file {args.input}...')
{pybiolib-1.2.888.dist-info → pybiolib-1.2.902.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: pybiolib
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- Version: 1.2.888
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+ Version: 1.2.902
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  Summary: BioLib Python Client
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  License: MIT
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  Keywords: biolib
{pybiolib-1.2.888.dist-info → pybiolib-1.2.902.dist-info}/RECORD RENAMED
@@ -22,7 +22,7 @@ biolib/_internal/llm_instructions/.github/instructions/style-react-ts.instructio
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  biolib/_internal/llm_instructions/.github/prompts/biolib_app_inputs.prompt.md,sha256=SMzXZImdID0yKjhE1fG54VrHdD8IVuwRxRKsMF-KjWs,697
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  biolib/_internal/llm_instructions/.github/prompts/biolib_run_apps.prompt.md,sha256=-t1bmGr3zEFa6lKHaLcI98yq4Sg1TCMW8xbelNSHaOA,696
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  biolib/_internal/llm_instructions/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- biolib/_internal/push_application.py,sha256=2XbQM2BWIuXX_zKIPPlbsEhtIoF_wBgbn2PtVnwqjUA,18203
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+ biolib/_internal/push_application.py,sha256=e0SnPh64X99ICUt5xPCIfbS3WHkUzMKLFFyaf6u2vqQ,18286
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  biolib/_internal/runtime.py,sha256=BiHl4klUHr36MCpqKaUso4idHeBZfPAahLYRQrabFqA,486
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  biolib/_internal/templates/__init__.py,sha256=NVbhLUMC8HITzkLvP88Qu7FHaL-SvQord-DX3gh1Ykk,24
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  biolib/_internal/templates/init_template/.biolib/config.yml,sha256=y4ndTgbFvUE1UiGcIOqogT2Wm8jahGffeyU5rlCEltQ,427
@@ -30,7 +30,7 @@ biolib/_internal/templates/init_template/.github/workflows/biolib.yml,sha256=sph
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  biolib/_internal/templates/init_template/.gitignore,sha256=dR_jhtT0boUspgk3S5PPUwuO0o8gKGIbdwu8IH638CY,20
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  biolib/_internal/templates/init_template/Dockerfile,sha256=Wv2r9aiazkL1wOf_BT1f5Kx_-txfrqSkYTtWI8HGdL8,169
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  biolib/_internal/templates/init_template/requirements.txt,sha256=2GnBHsKg4tX5F06Z4YeLuId6jQO3-HGTITsaVBTDG0Y,42
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- biolib/_internal/templates/init_template/run.py,sha256=GS2qGGmFGIthdxdSxZbGktwZc8x3Q2IVLubpp7hEROw,529
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+ biolib/_internal/templates/init_template/run.py,sha256=oat-Vzcz4XZilrTtgy8CzfltBAa5v6iduGof4Tuulhg,402
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  biolib/_internal/templates/init_template/run.sh,sha256=CF25MYW8vNcZee6_Lydg0o5JDWG0YbrSvFHhMJ5I6x0,39
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  biolib/_internal/templates/templates.py,sha256=-o0VdRMwPhnzL4VlCe3BZYl1aI9HLKtOmNjs6gu9fIQ,101
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  biolib/_internal/tree_utils.py,sha256=_Q_6_NDtIiROcefymqxEVddjqti6Mt3OZ4U0GcDW61s,3904
@@ -141,8 +141,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
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  biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
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  biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
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  biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
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- pybiolib-1.2.888.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
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- pybiolib-1.2.888.dist-info/METADATA,sha256=d8BcaYijJJYC_RoL6MBx00unC4RItgvRhhT-skOVXXo,1570
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- pybiolib-1.2.888.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- pybiolib-1.2.888.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
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- pybiolib-1.2.888.dist-info/RECORD,,
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+ pybiolib-1.2.902.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
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+ pybiolib-1.2.902.dist-info/METADATA,sha256=ISvquQ9ZI_6fonzivlinH12A8qecBRv7QLA7YVddpJc,1570
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+ pybiolib-1.2.902.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ pybiolib-1.2.902.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
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+ pybiolib-1.2.902.dist-info/RECORD,,