pybiolib 1.2.856__py3-none-any.whl → 1.2.869__py3-none-any.whl

biolib/cli/init.py

@@ -26,6 +26,7 @@ def init() -> None:
 
     template_dir = templates.init_template()
     conflicting_files = []
+    files_to_overwrite = set()
 
     try:
         # First pass: check for conflicts
@@ -40,11 +41,17 @@ def init() -> None:
                     with open(source_file, 'rb') as fsrc, open(destination_file, 'rb') as fdest:
                         if fsrc.read() != fdest.read():
                             conflicting_files.append(os.path.relpath(destination_file, cwd))
+
         if conflicting_files:
-            print('The following files were not overwritten. Use --force to override them:', file=sys.stderr)
+            print('The following files already exist and would be overwritten:')
+            for conflicting_file in conflicting_files:
+                print(f'  {conflicting_file}')
+            print()
+
             for conflicting_file in conflicting_files:
-                print(f'  {conflicting_file}', file=sys.stderr)
-            exit(1)
+                choice = input(f'Overwrite {conflicting_file}? [y/N]: ').lower().strip()
+                if choice in ['y', 'yes']:
+                    files_to_overwrite.add(conflicting_file)
 
         replace_app_uri = app_uri if app_uri else 'PUT_APP_URI_HERE'
 
@@ -61,8 +68,9 @@ def init() -> None:
 
                 source_file = os.path.join(root, filename)
                 destination_file = os.path.join(destination_dir, filename)
+                relative_file_path = os.path.relpath(destination_file, cwd)
 
-                if not os.path.exists(destination_file):
+                if not os.path.exists(destination_file) or relative_file_path in files_to_overwrite:
                     try:
                         with open(source_file) as f:
                             content = f.read()

{pybiolib-1.2.856.dist-info → pybiolib-1.2.869.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.856
+Version: 1.2.869
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.856.dist-info → pybiolib-1.2.869.dist-info}/RECORD

@@ -83,7 +83,7 @@ biolib/cli/__init__.py,sha256=IHC2bEyA27pvgp-18SGfFVJOP456elanz7suDP8D084,1316
 biolib/cli/auth.py,sha256=rpWGmXs6Fz6CGrO9K8ibPRszOdXG78Vig_boKaVCD9A,2082
 biolib/cli/data_record.py,sha256=t8DfJK2EZ_SNZ9drDA_N5Jqy8DNwf9f5SlFrIaOvtv0,3501
 biolib/cli/download_container.py,sha256=HIZVHOPmslGE5M2Dsp9r2cCkAEJx__vcsDz5Wt5LRos,483
-biolib/cli/init.py,sha256=v6ebi969q4lMfBBjJEUbG50Z8J5vA1fkTYeVfm7iZ7Y,4083
+biolib/cli/init.py,sha256=_dhnKdlRMy2oSNRRsXdjFKVzayy2aiRQkeF948VCCkg,4438
 biolib/cli/lfs.py,sha256=z2qHUwink85mv9yDgifbVKkVwuyknGhMDTfly_gLKJM,4151
 biolib/cli/push.py,sha256=pSFEUQkQ69M__eR1nIT9ejW4V4_MtX3lb8ydEc1uKiM,1484
 biolib/cli/run.py,sha256=MCo0ZqW2pHBxOoCI3i5gAx5D0auW9fmxHqkAF4TRhms,2134
@@ -140,8 +140,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.856.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.856.dist-info/METADATA,sha256=8dJ2I-UmDG62OdLmb9QEm4g4DuF-Xu6AEIH1VaaGQrs,1570
-pybiolib-1.2.856.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-pybiolib-1.2.856.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.856.dist-info/RECORD,,
+pybiolib-1.2.869.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.869.dist-info/METADATA,sha256=cKOLYxkyG6H3jabOiGGTUNZsKDU-UL3SdxoddPJxt1E,1570
+pybiolib-1.2.869.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+pybiolib-1.2.869.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.869.dist-info/RECORD,,