pybiolib 1.2.772__py3-none-any.whl → 1.2.796__py3-none-any.whl

biolib/_internal/push_application.py

@@ -11,6 +11,7 @@ from biolib._internal.data_record.push_data import (
     validate_data_path_and_get_files_and_size_of_directory,
 )
 from biolib._internal.file_utils import get_files_and_size_of_directory, get_iterable_zip_stream
+from biolib._internal.types.push import PushResponseDict
 from biolib.biolib_api_client import BiolibApiClient
 from biolib.biolib_api_client.biolib_app_api import BiolibAppApi
 from biolib.biolib_docker_client import BiolibDockerClient
@@ -79,7 +80,8 @@ def push_application(
     app_version_to_copy_images_from: Optional[str],
     set_as_active: bool,
     set_as_published: bool,
-):
+    dry_run: bool = False,
+) -> Optional[PushResponseDict]:
     parsed_uri = parse_app_uri(app_uri)
     app_name = parsed_uri['app_name']
 
@@ -199,7 +201,10 @@ def push_application(
         raise BioLibError(
             'To push a version with app_data the app must be set to "Allow Client-Side Source Code Access"'
         )
-    # push new app version
+    if dry_run:
+        logger.info('Successfully completed dry-run. No new version was pushed.')
+        return None
+
     new_app_version_json = BiolibAppApi.push_app_version(
         semantic_version=semantic_version,
         app_id=app['public_id'],

biolib/_internal/types/push.py

@@ -0,0 +1,6 @@
+from typing import TypedDict
+
+
+class PushResponseDict(TypedDict):
+    app_uri: str
+    sematic_version: str

biolib/cli/push.py

@@ -13,7 +13,14 @@ from biolib.biolib_logging import logger, logger_no_user_data
 @click.option('--copy-images-from-version', required=False)
 @click.option('--dev', is_flag=True, default=False, required=False)
 @click.option('--pre-release', is_flag=True, default=False, required=False)
-def push(uri, path: str, copy_images_from_version: Optional[str], dev: bool, pre_release: bool) -> None:
+@click.option(
+    '--dry-run',
+    is_flag=True,
+    default=False,
+    required=False,
+    help='Perform validation without pushing',
+)
+def push(uri, path: str, copy_images_from_version: Optional[str], dev: bool, pre_release: bool, dry_run: bool) -> None:
     logger.configure(default_log_level=logging.INFO)
     logger_no_user_data.configure(default_log_level=logging.INFO)
     set_as_active = True
@@ -33,4 +40,5 @@ def push(uri, path: str, copy_images_from_version: Optional[str], dev: bool, pre
         app_version_to_copy_images_from=copy_images_from_version,
         set_as_active=set_as_active,
         set_as_published=set_as_published,
+        dry_run=dry_run,
     )

biolib/experiments/experiment.py

@@ -4,11 +4,14 @@ from collections import OrderedDict
 from biolib import api
 from biolib._internal.types.experiment import DeprecatedExperimentDict, ExperimentDict
 from biolib._internal.types.resource import ResourceDetailedDict
+from biolib._internal.utils import open_browser_window_from_notebook
+from biolib.biolib_api_client import BiolibApiClient
 from biolib.biolib_errors import BioLibError
 from biolib.jobs.job import Job
 from biolib.jobs.types import JobsPaginatedResponse
 from biolib.tables import BioLibTable
 from biolib.typing_utils import Dict, List, Optional, Union
+from biolib.utils import IS_RUNNING_IN_NOTEBOOK
 
 
 class Experiment:
@@ -42,6 +45,10 @@ class Experiment:
     def uuid(self) -> str:
         return self._resource_dict['uuid']
 
+    @property
+    def id(self) -> str:
+        return self.uuid
+
     @property
     def name(self) -> str:
         return self._resource_dict['name']
@@ -235,3 +242,20 @@ class Experiment:
 
     def _refetch(self) -> None:
         self._resource_dict = self._get_resource_dict_by_uuid(uuid=self._resource_dict['uuid'])
+
+    def open_browser(self) -> None:
+        """Open a browser window to view this experiment.
+
+        If running in a notebook, this will attempt to open a new browser window.
+        Otherwise, it will print a URL that you can copy and paste.
+        """
+        api_client = BiolibApiClient.get()
+        url_to_open = f'{api_client.base_url}/experiments/{self.id}/'
+
+        if IS_RUNNING_IN_NOTEBOOK:
+            print(f'Opening experiment page at: {url_to_open}')
+            print('If your browser does not open automatically, click on the link above.')
+            open_browser_window_from_notebook(url_to_open)
+        else:
+            print('Please copy and paste the following link into your browser:')
+            print(url_to_open)

biolib/sdk/__init__.py

@@ -24,6 +24,9 @@ def push_app_version(uri: str, path: str) -> _BioLibApp:
         set_as_active=False,
         set_as_published=False,
     )
+    if not push_data:
+        raise Exception('Failed to push application; please check the logs for more details')
+
     uri = f'{push_data["app_uri"]}:{push_data["sematic_version"]}'
     return _BioLibApp(uri)
 

{pybiolib-1.2.772.dist-info → pybiolib-1.2.796.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.772
+Version: 1.2.796
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.772.dist-info → pybiolib-1.2.796.dist-info}/RECORD

@@ -19,7 +19,7 @@ biolib/_internal/llm_instructions/.github/copilot-instructions.md,sha256=GCGYxfj
 biolib/_internal/llm_instructions/.github/prompts/biolib_app_inputs.prompt.md,sha256=DcBUNaViuNfXoomj-IVUcIcBtJlXuIYOroUfDM_R6wU,3212
 biolib/_internal/llm_instructions/.github/prompts/biolib_run_apps.prompt.md,sha256=HYv-MgpQKIU7Hv90SvZ3tqXY6KWxYVnqamXDRyInOHM,7926
 biolib/_internal/llm_instructions/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/_internal/push_application.py,sha256=Ffj3iZ0nma4KHTB-PKCeFvhCHHhAEhgKClxnfBUpL8U,12296
+biolib/_internal/push_application.py,sha256=I7yHGcwK6udc2hVmOQIc1BcQBipAMibEjURMI6HgdXk,12502
 biolib/_internal/runtime.py,sha256=BiHl4klUHr36MCpqKaUso4idHeBZfPAahLYRQrabFqA,486
 biolib/_internal/tree_utils.py,sha256=_Q_6_NDtIiROcefymqxEVddjqti6Mt3OZ4U0GcDW61s,3904
 biolib/_internal/types/__init__.py,sha256=WvtlSHh77QhYVTLeRpoPAzqvByLzbEPf_ZqYGHFlQug,247
@@ -27,6 +27,7 @@ biolib/_internal/types/app.py,sha256=Mz2QGD_jESX-K9JYnLWPo4YA__Q_1FQQTk9pvidCohU
 biolib/_internal/types/data_record.py,sha256=9r_vdhVs60YTnzU4XQFXfDrfS2P2MqD3BH2xa7lk6ck,852
 biolib/_internal/types/experiment.py,sha256=2SbCLSwgLglmQgyUHYb5SvO0Cfsgs-f3jqao9--Z_sY,682
 biolib/_internal/types/file_node.py,sha256=T6BIqo662f3nwMBRqtBHYsg6YuuUaKpiokHcVjv9_ME,283
+biolib/_internal/types/push.py,sha256=qSXCjdzOmHG7_QiwXaNSrVkESTMxnIKPvEut-9Mqt-g,108
 biolib/_internal/types/resource.py,sha256=LQnIYBR8Fi7zvnA5vBpzcL2c6ZjpaKNTe38hXck82k0,449
 biolib/_internal/types/resource_permission.py,sha256=ZE7eokpzswAiqe4GdpdxdZ6_jl0LdiRD9gP81I8C3fY,292
 biolib/_internal/types/resource_version.py,sha256=cU0YFHqxO-wX_Y6CoeK0Iei61gFwVoyR_kPOSTQ4mCs,304
@@ -73,7 +74,7 @@ biolib/cli/data_record.py,sha256=t8DfJK2EZ_SNZ9drDA_N5Jqy8DNwf9f5SlFrIaOvtv0,350
 biolib/cli/download_container.py,sha256=HIZVHOPmslGE5M2Dsp9r2cCkAEJx__vcsDz5Wt5LRos,483
 biolib/cli/init.py,sha256=PZLzQYbT7u78J1qSCcs-frVfWHohkrZHxLGRSmMdRg4,1061
 biolib/cli/lfs.py,sha256=z2qHUwink85mv9yDgifbVKkVwuyknGhMDTfly_gLKJM,4151
-biolib/cli/push.py,sha256=RxB4RHpjtL27Fpq7WRGojJ53R9jUuE1Cq9_NmHFzNsM,1306
+biolib/cli/push.py,sha256=pSFEUQkQ69M__eR1nIT9ejW4V4_MtX3lb8ydEc1uKiM,1484
 biolib/cli/run.py,sha256=MCo0ZqW2pHBxOoCI3i5gAx5D0auW9fmxHqkAF4TRhms,2134
 biolib/cli/runtime.py,sha256=Xv-nrma5xX8NidWcvbUKcUvuN5TCarZa4A8mPVmF-z0,361
 biolib/cli/sdk.py,sha256=XisJwTft4QDB_99eGDlz-WBqqRwIqkVg7HyvxWtOG8w,471
@@ -110,14 +111,14 @@ biolib/compute_node/webserver/webserver_types.py,sha256=2t8EaFKESnves3BA_NBdnS2y
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
 biolib/compute_node/webserver/worker_thread.py,sha256=7uD9yQPhePYvP2HCJ27EeZ_h6psfIWFgqm1RHZxzobs,12483
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/experiments/experiment.py,sha256=OTUPOY_F5qo22oFi3acnRMmG0pcmP6ZfoQncFkcTYDQ,9478
+biolib/experiments/experiment.py,sha256=gY1-d7FgVrcQO3YzOJ0mHS6j7z7rl5XzXEuk7dFi1gU,10460
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
 biolib/jobs/job.py,sha256=X33-s9u8x3uZI0x_fSDgEFAW0ke-8Qi96M-VB-W29MA,26703
 biolib/jobs/job_result.py,sha256=rALHiKYNaC9lHi_JJqBob1RubzNLwG9Z386kwRJjd2M,5885
 biolib/jobs/types.py,sha256=ezvaoTANsWazK6PmfpYcqezdfjP7MNBEBfqIZGoZhz8,997
 biolib/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/runtime/__init__.py,sha256=MlRepA11n2H-3plB5rzWyyHK2JmP6PiaP3i6x3vt0mg,506
-biolib/sdk/__init__.py,sha256=YMBY_AR-BOfOKtYJB1d78j9OCZGVevgan0wLnMD1Xvs,2239
+biolib/sdk/__init__.py,sha256=Z1S5BgpvM87S2o1libtqkYN1CfYUhn_d4ChEJjwdFKM,2356
 biolib/tables.py,sha256=MmruV-nJLc3HbLVJBAiDuDCgS2-4oaUkpoCLLUNYbxQ,1173
 biolib/templates/__init__.py,sha256=Yx62sSyDCDesRQDQgmbDsLpfgEh93fWE8r9u4g2azXk,36
 biolib/templates/example_app.py,sha256=EB3E3RT4SeO_ii5nVQqJpi5KDGNE_huF1ub-e5ZFveE,715
@@ -130,8 +131,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.772.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.772.dist-info/METADATA,sha256=7epZrh0vQ2vplRyo2cI_-U8MjtUIY_EHqDgMXR11WbM,1570
-pybiolib-1.2.772.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-pybiolib-1.2.772.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.772.dist-info/RECORD,,
+pybiolib-1.2.796.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.796.dist-info/METADATA,sha256=SoMz2oMjXUwS383J9ynDCIVIRFV_Bi0wXXMluw78JWg,1570
+pybiolib-1.2.796.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+pybiolib-1.2.796.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.796.dist-info/RECORD,,