pybiolib 1.2.744__py3-none-any.whl → 1.2.760__py3-none-any.whl

biolib/_runtime/runtime.py

@@ -78,16 +78,18 @@ class Runtime:
         Set BioLib result name to FASTA file name (excluding file extension) or,
         if detecting a BioLib generated name, use ID of the first sequence in the fasta file
         """
-
-        # Set job name to first header if FASTA text input (random BioLib file) detected
-        if re.match('^input_[A-Za-z0-9]+.*', path_to_fasta):
-            first_id = next(SeqUtil.parse_fasta(path_to_fasta)).id
-            result_name = first_id.replace(' ', '_')[:60]
-        else:
-            result_name = Path(path_to_fasta).stem
-
-        logger.debug(f'Setting result name to "{result_name}" from {path_to_fasta}')
-        Runtime.set_result_name_prefix(result_name)
+        try:
+            # Set job name to first header if FASTA text input (random BioLib file) detected
+            if re.match('^input_[A-Za-z0-9]+.*', path_to_fasta):
+                first_id = next(SeqUtil.parse_fasta(path_to_fasta)).id
+                result_name = first_id.replace(' ', '_')[:60]
+            else:
+                result_name = Path(path_to_fasta).stem
+
+            logger.debug(f'Setting result name to "{result_name}" from {path_to_fasta}')
+            Runtime.set_result_name_prefix(result_name)
+        except Exception as e:
+            logger.warning(f'Failed to set result name from fasta file {path_to_fasta}: {str(e)}')
 
     @staticmethod
     def create_result_note(note: str) -> None:

biolib/experiments/experiment.py

@@ -197,6 +197,25 @@ class Experiment:
 
         return jobs
 
+    def get_results(self, status: Optional[str] = None) -> List[Job]:
+        r"""Get a list of results in this experiment, optionally filtered by status.
+
+        Args:
+            status (str, optional): Filter results by status. One of:
+                'in_progress', 'completed', 'failed', 'cancelled'
+
+        Returns:
+            List[Job]: List of result objects in this experiment
+
+        Example::
+
+            >>> # Get all results in the experiment
+            >>> results = experiment.get_results()
+            >>> # Get only completed results
+            >>> completed_results = experiment.get_results(status='completed')
+        """
+        return self.get_jobs(status=status)
+
     def rename(self, destination: str) -> None:
         api.client.patch(f'/resources/{self.uuid}/', data={'uri': destination})
         self._refetch()

{pybiolib-1.2.744.dist-info → pybiolib-1.2.760.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.744
+Version: 1.2.760
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.744.dist-info → pybiolib-1.2.760.dist-info}/RECORD

@@ -34,7 +34,7 @@ biolib/_internal/types/result.py,sha256=MesSTBXCkaw8HydXgHf1OKGVLzsxhZ1KV5z4w-VI
 biolib/_internal/types/typing.py,sha256=qrsk8hHcGEbDpU1QQFzHAKnhQxkMe7uJ6pxHeAnfv1Y,414
 biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd3As7c,630
 biolib/_internal/utils/multinode.py,sha256=-J3PEAK3NaOwCn--5T7vWHkA3yu5w9QhmuhkQcH-2wY,8229
-biolib/_runtime/runtime.py,sha256=bZQ0m39R9jOBVAtlyvzDnOobKueOAQUCwMUZjDQnO7E,4439
+biolib/_runtime/runtime.py,sha256=0XgQjVMJV931fg5U0wQbiSMzq1hT5ME8neEIFl1zVUo,4613
 biolib/_session/session.py,sha256=US1Y1jfFIAm86-Lq3C7nCXpZXUJXXBVBkND9djMNYxI,1649
 biolib/api/__init__.py,sha256=mQ4u8FijqyLzjYMezMUUbbBGNB3iFmkNdjXnWPZ7Jlw,138
 biolib/api/client.py,sha256=2GpKE7QrPgyPdgJgrV7XnZByIJf1n26UCy3aoaHBs1M,7881
@@ -110,7 +110,7 @@ biolib/compute_node/webserver/webserver_types.py,sha256=2t8EaFKESnves3BA_NBdnS2y
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
 biolib/compute_node/webserver/worker_thread.py,sha256=7uD9yQPhePYvP2HCJ27EeZ_h6psfIWFgqm1RHZxzobs,12483
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/experiments/experiment.py,sha256=31FfD88OsYZDWj5y3kVevTxlL7KJYICrvMxOivmqEM4,8785
+biolib/experiments/experiment.py,sha256=OTUPOY_F5qo22oFi3acnRMmG0pcmP6ZfoQncFkcTYDQ,9478
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
 biolib/jobs/job.py,sha256=X33-s9u8x3uZI0x_fSDgEFAW0ke-8Qi96M-VB-W29MA,26703
 biolib/jobs/job_result.py,sha256=rALHiKYNaC9lHi_JJqBob1RubzNLwG9Z386kwRJjd2M,5885
@@ -130,8 +130,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.744.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.744.dist-info/METADATA,sha256=P3UqZUDlG3cM1txzPN6teYWNjyWs9xNg92mJpbTFuZs,1570
-pybiolib-1.2.744.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
-pybiolib-1.2.744.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.744.dist-info/RECORD,,
+pybiolib-1.2.760.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.760.dist-info/METADATA,sha256=TWkrfDl0z15kQ5gxF7q2wE8ByKujbCuXIHdlCz1NP-w,1570
+pybiolib-1.2.760.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+pybiolib-1.2.760.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.760.dist-info/RECORD,,

{pybiolib-1.2.744.dist-info → pybiolib-1.2.760.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.1.2
+Generator: poetry-core 2.1.3
 Root-Is-Purelib: true
 Tag: py3-none-any