pybiolib 1.2.602__py3-none-any.whl → 1.2.633__py3-none-any.whl

biolib/biolib_api_client/api_client.py

@@ -2,16 +2,14 @@ import base64
 import binascii
 import json
 import os
-
 from datetime import datetime, timezone
 from json.decoder import JSONDecodeError
 
-from biolib._runtime.runtime import Runtime
 from biolib._internal.http_client import HttpClient
-from biolib.typing_utils import Optional
+from biolib._runtime.runtime import Runtime
 from biolib.biolib_errors import BioLibError
 from biolib.biolib_logging import logger, logger_no_user_data
-from biolib.typing_utils import TypedDict, Dict, Any
+from biolib.typing_utils import Any, Dict, Optional, TypedDict
 
 from .user_state import UserState
 
@@ -181,10 +179,11 @@ class BiolibApiClient:
         BiolibApiClient.api_client = _ApiClient(base_url=base_url, access_token=access_token)
 
     @staticmethod
-    def get() -> _ApiClient:
+    def get(attempt_sign_in: bool = True) -> _ApiClient:
         api_client = BiolibApiClient.api_client
         if api_client:
-            api_client.attempt_sign_in()
+            if attempt_sign_in:
+                api_client.attempt_sign_in()
             return api_client
 
         raise BioLibError('Attempted to use uninitialized API client')

biolib/compute_node/job_worker/job_worker.py

@@ -195,11 +195,13 @@ class JobWorker:
     def _cleanup(self) -> None:
         self.is_cleaning_up = True
 
+        logger_no_user_data.debug('Cleaning up executers...')
         for executor in self._executors:
             executor.cleanup()
 
         proxy_count = len(self._remote_host_proxies)
         if proxy_count > 0:
+            logger_no_user_data.debug('Cleaning up proxies...')
             proxy_cleanup_start_time = time()
 
             for proxy in self._remote_host_proxies:
@@ -212,10 +214,12 @@ class JobWorker:
             self._remote_host_proxies = []
             logger_no_user_data.debug(f'Cleaned up {proxy_count} proxies in {time() - proxy_cleanup_start_time}')
 
+        logger_no_user_data.debug('Cleaning up networks...')
         self._cleanup_network(self._internal_network)
         self._internal_network = None
         self._cleanup_network(self._public_network)
         self._public_network = None
+        logger_no_user_data.debug('Cleaned up networks...')
 
     @staticmethod
     def _cleanup_network(network: Optional[Network]) -> None:

biolib/user/sign_in.py

@@ -1,15 +1,15 @@
 import time
 import webbrowser
 
+from biolib._internal.utils import open_browser_window_from_notebook
 from biolib.biolib_api_client import BiolibApiClient
 from biolib.biolib_api_client.auth import BiolibAuthChallengeApi
 from biolib.biolib_logging import logger_no_user_data
 from biolib.utils import IS_RUNNING_IN_NOTEBOOK
-from biolib._internal.utils import open_browser_window_from_notebook
 
 
 def sign_out() -> None:
-    api_client = BiolibApiClient.get()
+    api_client = BiolibApiClient.get(attempt_sign_in=False)
     api_client.sign_out()
 
 

{pybiolib-1.2.602.dist-info → pybiolib-1.2.633.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.602
+Version: 1.2.633
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.602.dist-info → pybiolib-1.2.633.dist-info}/RECORD

@@ -33,7 +33,7 @@ biolib/app/__init__.py,sha256=cdPtcfb_U-bxb9iSL4fCEq2rpD9OjkyY4W-Zw60B0LI,37
 biolib/app/app.py,sha256=HxW3T1iuDh-DMhVDB0NbgQjRXqgE7dPw8CAdhrd5lbw,9940
 biolib/app/search_apps.py,sha256=K4a41f5XIWth2BWI7OffASgIsD0ko8elCax8YL2igaY,1470
 biolib/biolib_api_client/__init__.py,sha256=E5EMa19wJoblwSdQPYrxc_BtIeRsAuO0L_jQweWw-Yk,182
-biolib/biolib_api_client/api_client.py,sha256=ohvbWbpresxLHFGPkvXACfmiTYsBk8RBx5XsBbLYg_M,7546
+biolib/biolib_api_client/api_client.py,sha256=IONzXeFCHl4wuct6fqOC_7NiTv_zFy6ys0hsAtvLzTA,7578
 biolib/biolib_api_client/app_types.py,sha256=1sXz9XnLRKNALMglNdTbew7AL6OkcUan0MPdj4xQLis,2456
 biolib/biolib_api_client/auth.py,sha256=kjm0ZHnH3I8so3su2sZbBxNHYp-ZUdrZ5lwQ0K36RSw,949
 biolib/biolib_api_client/biolib_app_api.py,sha256=DdE_kRfDgVa876Cdl_D1P0lBoaghFomEyy-ZP8K7SoY,5177
@@ -84,7 +84,7 @@ biolib/compute_node/job_worker/executors/types.py,sha256=wbjWZZ2f9FttjqUCCOeZmn7
 biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py,sha256=_cvEiZbOwfkv6fYmfrvdi_FVviIEYr_dSClQcOQaUWM,1198
 biolib/compute_node/job_worker/job_max_runtime_timer_thread.py,sha256=K_xgz7IhiIjpLlXRk8sqaMyLoApcidJkgu29sJX0gb8,1174
 biolib/compute_node/job_worker/job_storage.py,sha256=lScHI3ubcHKagSEW243tgbIWXUfbWDHDjEOPMvXxJE8,4603
-biolib/compute_node/job_worker/job_worker.py,sha256=xp1laEWUhUsKzF4ITdsTWcQlSn133pAjkeiPMAG5jqQ,28892
+biolib/compute_node/job_worker/job_worker.py,sha256=3m6_ZzsSbuygbh9UmQ2RQrPZgJVsjcSR5V57ddECcqo,29139
 biolib/compute_node/job_worker/large_file_system.py,sha256=XXqRlVtYhs-Ji9zQGIk5KQPXFO_Q5jJH0nnlw4GkeMY,10461
 biolib/compute_node/job_worker/mappings.py,sha256=Z48Kg4nbcOvsT2-9o3RRikBkqflgO4XeaWxTGz-CNvI,2499
 biolib/compute_node/job_worker/utilization_reporter_thread.py,sha256=7tm5Yk9coqJ9VbEdnO86tSXI0iM0omwIyKENxdxiVXk,8575
@@ -113,15 +113,15 @@ biolib/templates/__init__.py,sha256=Yx62sSyDCDesRQDQgmbDsLpfgEh93fWE8r9u4g2azXk,
 biolib/templates/example_app.py,sha256=EB3E3RT4SeO_ii5nVQqJpi5KDGNE_huF1ub-e5ZFveE,715
 biolib/typing_utils.py,sha256=ntzrlyTkUaO2OtccLYzCAGztGdca0WT5fikJUmSkT-Y,148
 biolib/user/__init__.py,sha256=Db5wtxLfFz3ID9TULSSTo77csw9tO6RtxMRvV5cqKEE,39
-biolib/user/sign_in.py,sha256=XTAmRPKfmg7VAaB8cT5wcmfxoPXeHqY8LmDiADF7zbw,2064
+biolib/user/sign_in.py,sha256=e_JnykVxemq8eUBD5GmthjDV504CT1Dmn0EshrDCGB8,2085
 biolib/utils/__init__.py,sha256=VtuTFu8zWZwJzfYhVEpPdlhvTA2JkHCboqqQA-VNkpA,5790
 biolib/utils/app_uri.py,sha256=Yq_-_VGugQhMMo6mM5f0G9yNlLkr0WK4j0Nrf3FE4xQ,2171
 biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3100
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.602.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.602.dist-info/METADATA,sha256=2ZUy2CFF4_-MSoMFKW_kCmK-TJCmXTsp8tMLvynf32w,1570
-pybiolib-1.2.602.dist-info/WHEEL,sha256=XbeZDeTWKc1w7CSIyre5aMDU_-PohRwTQceYnisIYYY,88
-pybiolib-1.2.602.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.602.dist-info/RECORD,,
+pybiolib-1.2.633.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.633.dist-info/METADATA,sha256=3AF7yKFrHFCcuoXGh_XLgYlEijDF3TTIpzzCRjiZ524,1570
+pybiolib-1.2.633.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
+pybiolib-1.2.633.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.633.dist-info/RECORD,,

{pybiolib-1.2.602.dist-info → pybiolib-1.2.633.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.1.1
+Generator: poetry-core 2.1.2
 Root-Is-Purelib: true
 Tag: py3-none-any