pybiolib 1.2.515__py3-none-any.whl → 1.2.520__py3-none-any.whl

biolib/_internal/push_application.py

@@ -191,6 +191,11 @@ def push_application(
 
     app_response = BiolibAppApi.get_by_uri(app_uri_to_fetch)
     app = app_response['app']
+
+    if app_data and not app['allow_client_side_execution']:
+        raise BioLibError(
+            'To push a version with app_data the app must be set to "Allow Client-Side Source Code Access"'
+        )
     # push new app version
     new_app_version_json = BiolibAppApi.push_app_version(
         semantic_version=semantic_version,

biolib/jobs/job.py

@@ -230,7 +230,35 @@ class Job:
         except Exception as error:
             raise BioLibError(f'Failed to rename job {self._uuid} due to: {error}') from error
 
-    def recompute(self, app_uri: Optional[str] = None, machine: Optional[str] = None, blocking: bool = True) -> 'Job':
+    def recompute(
+        self,
+        app_uri: Optional[str] = None,
+        machine: Optional[str] = None,
+        blocking: bool = True,
+        arguments: Optional[List[str]] = None,
+    ) -> 'Job':
+        """Recompute the job with the same input files but potentially different arguments.
+
+        Args:
+            app_uri (Optional[str], optional): The URI of the app to use for recomputation.
+                If None, uses the original app URI. Defaults to None.
+            machine (Optional[str], optional): The machine to run the job on.
+                If None, uses the original requested machine. Defaults to None.
+            blocking (bool, optional): Whether to block until the job completes.
+                If True, streams logs until completion. Defaults to True.
+            arguments (Optional[List[str]], optional): New arguments to use for the job.
+                If None, uses the original arguments. Defaults to None.
+
+        Returns:
+            Job: A new Job instance for the recomputed job.
+
+        Example::
+            >>> job = biolib.get_job("job_id")
+            >>> # Recompute with the same arguments
+            >>> new_job = job.recompute()
+            >>> # Recompute with different arguments
+            >>> new_job = job.recompute(arguments=["--new-arg", "value"])
+        """
         app_response = BiolibAppApi.get_by_uri(uri=app_uri or self._job_dict['app_uri'])
 
         job_storage_input = RemoteJobStorageEndpoint(
@@ -241,6 +269,16 @@ class Job:
         http_response = HttpClient.request(url=job_storage_input.get_remote_url())
         module_input_serialized = http_response.content
 
+        # If arguments are provided, deserialize the module input, update the arguments, and serialize it again
+        if arguments is not None:
+            module_input = ModuleInput(module_input_serialized)
+            module_input_dict = module_input.deserialize()
+
+            # Create a new ModuleInput with updated arguments
+            module_input_serialized = ModuleInput().serialize(
+                stdin=module_input_dict['stdin'], arguments=arguments, files=module_input_dict['files']
+            )
+
         original_requested_machine = (
             self._job_dict['requested_machine'] if self._job_dict['requested_machine'] else None
         )

{pybiolib-1.2.515.dist-info → pybiolib-1.2.520.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.515
+Version: 1.2.520
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.515.dist-info → pybiolib-1.2.520.dist-info}/RECORD

@@ -13,7 +13,7 @@ biolib/_internal/lfs/__init__.py,sha256=gSWo_xg61UniYgD7yNYxeT4I9uaXBCBSi3_nmZjn
 biolib/_internal/lfs/cache.py,sha256=pQS2np21rdJ6I3DpoOutnzPHpLOZgUIS8TMltUJk_k4,2226
 biolib/_internal/libs/__init__.py,sha256=Jdf4tNPqe_oIIf6zYml6TiqhL_02Vyqwge6IELrAFhw,98
 biolib/_internal/libs/fusepy/__init__.py,sha256=AWDzNFS-XV_5yKb0Qx7kggIhPzq1nj_BZS5y2Nso08k,41944
-biolib/_internal/push_application.py,sha256=LQSawvF8uWOGOu-6sEJulvc6ia4Fo3pfQ2m_jLBqXRs,11946
+biolib/_internal/push_application.py,sha256=C5YXh-TZzVnz5eBPOWWOU6n750JyKVdHvIQQc-wddG4,12152
 biolib/_internal/runtime.py,sha256=BiHl4klUHr36MCpqKaUso4idHeBZfPAahLYRQrabFqA,486
 biolib/_internal/types/__init__.py,sha256=xLgOQJFh3GRtiqIJq7MaqHReZx4pp34_zcaFQ_JjuJ4,198
 biolib/_internal/types/app.py,sha256=Mz2QGD_jESX-K9JYnLWPo4YA__Q_1FQQTk9pvidCohU,118
@@ -101,7 +101,7 @@ biolib/compute_node/webserver/worker_thread.py,sha256=7uD9yQPhePYvP2HCJ27EeZ_h6p
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/experiments/experiment.py,sha256=pBtnOHz0kKoFxlIGf08o8ZCEOze-CljwfOsTdhvCTCk,8646
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
-biolib/jobs/job.py,sha256=edKfRiojv6f4sLzz1YfJupwvHL2zuh7L_2v_3a4gSCI,21456
+biolib/jobs/job.py,sha256=vmALUOA9APqz0qTjmlisT6ChZHUwOaTlX-1VLhWJSrA,23176
 biolib/jobs/job_result.py,sha256=rALHiKYNaC9lHi_JJqBob1RubzNLwG9Z386kwRJjd2M,5885
 biolib/jobs/types.py,sha256=ezvaoTANsWazK6PmfpYcqezdfjP7MNBEBfqIZGoZhz8,997
 biolib/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -119,8 +119,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.515.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.515.dist-info/METADATA,sha256=Jj88WF2KbeMFgAf7NTX1e2sv-du05eUnWcDBBg5fD3w,1570
-pybiolib-1.2.515.dist-info/WHEEL,sha256=XbeZDeTWKc1w7CSIyre5aMDU_-PohRwTQceYnisIYYY,88
-pybiolib-1.2.515.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.515.dist-info/RECORD,,
+pybiolib-1.2.520.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.520.dist-info/METADATA,sha256=P8QqYdoshoaytFWMOg3byel-wiDde7-iS7YnHgSiYag,1570
+pybiolib-1.2.520.dist-info/WHEEL,sha256=XbeZDeTWKc1w7CSIyre5aMDU_-PohRwTQceYnisIYYY,88
+pybiolib-1.2.520.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.520.dist-info/RECORD,,