pybiolib 1.2.435__py3-none-any.whl → 1.2.445__py3-none-any.whl

biolib/jobs/job.py

@@ -19,7 +19,7 @@ from biolib.biolib_errors import BioLibError, CloudJobFinishedError
 from biolib.biolib_logging import logger, logger_no_user_data
 from biolib.compute_node.job_worker.job_storage import JobStorage
 from biolib.compute_node.utils import SystemExceptionCodeMap, SystemExceptionCodes
-from biolib.jobs.job_result import JobResult
+from biolib.jobs.job_result import JobResult, PathFilter
 from biolib.jobs.types import CloudJobDict, CloudJobStartedDict, JobDict
 from biolib.tables import BioLibTable
 from biolib.typing_utils import Dict, List, Optional, Union, cast
@@ -102,11 +102,14 @@ class Job:
             state=self._job_dict['state'],
         )
 
-    def list_output_files(self, *args, **kwargs) -> List[LazyLoadedFile]:
-        return self.result.list_output_files(*args, **kwargs)
+    def list_output_files(
+        self,
+        path_filter: Optional[PathFilter] = None,
+    ) -> List[LazyLoadedFile]:
+        return self.result.list_output_files(path_filter=path_filter)
 
-    def get_output_file(self, *args, **kwargs) -> LazyLoadedFile:
-        return self.result.get_output_file(*args, **kwargs)
+    def get_output_file(self, filename: str) -> LazyLoadedFile:
+        return self.result.get_output_file(filename=filename)
 
     def load_file_as_numpy(self, *args, **kwargs):
         try:
@@ -165,8 +168,17 @@ class Job:
 
             logger.info(f'  - {destination_file_path}')
 
-    def save_files(self, *args, **kwargs) -> None:
-        self.result.save_files(*args, **kwargs)
+    def save_files(
+        self,
+        output_dir: str,
+        path_filter: Optional[PathFilter] = None,
+        skip_file_if_exists: Optional[bool] = None,
+    ) -> None:
+        self.result.save_files(
+            output_dir=output_dir,
+            path_filter=path_filter,
+            skip_file_if_exists=skip_file_if_exists,
+        )
 
     def get_status(self) -> str:
         self._refetch_job_dict()
@@ -178,9 +190,10 @@ class Job:
             time.sleep(2)
         logger.info(f'Job {self.id} has finished.')
 
-    def get_shareable_link(self) -> str:
+    def get_shareable_link(self, embed_view: Optional[bool] = None) -> str:
         api_client = BiolibApiClient.get()
-        shareable_link = f'{api_client.base_url}/results/{self.id}/?token={self._auth_token}'
+        prefix = '/embed' if embed_view else ''
+        shareable_link = f'{api_client.base_url}{prefix}/results/{self.id}/?token={self._auth_token}'
         return shareable_link
 
     def open_browser(self) -> None:

{pybiolib-1.2.435.dist-info → pybiolib-1.2.445.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.435
+Version: 1.2.445
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.435.dist-info → pybiolib-1.2.445.dist-info}/RECORD

@@ -101,7 +101,7 @@ biolib/compute_node/webserver/worker_thread.py,sha256=0kb7RgwDSIzTZfjttUHelyAS8g
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/experiments/experiment.py,sha256=V1_UtcDm2ydxDjOlk0N7bv1jGTAb06psflAYcqbo0sY,8559
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
-biolib/jobs/job.py,sha256=qXDjaI5YbxEHLYtF-vflfdz6j4AEb83ioqSZli5aOgM,20453
+biolib/jobs/job.py,sha256=UAAqMtncarYQIMaJxO94pjQay9WEwrkMNI6suB8RsGs,20856
 biolib/jobs/job_result.py,sha256=rALHiKYNaC9lHi_JJqBob1RubzNLwG9Z386kwRJjd2M,5885
 biolib/jobs/types.py,sha256=ezvaoTANsWazK6PmfpYcqezdfjP7MNBEBfqIZGoZhz8,997
 biolib/runtime/__init__.py,sha256=MlRepA11n2H-3plB5rzWyyHK2JmP6PiaP3i6x3vt0mg,506
@@ -118,8 +118,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.435.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.435.dist-info/METADATA,sha256=zMTz4OsCjhynFCVMFZgeNKO3xqtFxUN2-Db29cCzq0c,1570
-pybiolib-1.2.435.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
-pybiolib-1.2.435.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.435.dist-info/RECORD,,
+pybiolib-1.2.445.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.445.dist-info/METADATA,sha256=nNQ_JHKGh4VTUJYhQKonNV-AKdM-grhONdFlnBCBNPo,1570
+pybiolib-1.2.445.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
+pybiolib-1.2.445.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.445.dist-info/RECORD,,