pybiolib 1.2.366__py3-none-any.whl → 1.2.408__py3-none-any.whl

biolib/app/app.py

@@ -11,7 +11,7 @@ from biolib.biolib_api_client.app_types import App, AppVersion
 from biolib.biolib_api_client.biolib_app_api import BiolibAppApi
 from biolib.biolib_api_client.biolib_job_api import BiolibJobApi
 from biolib.biolib_binary_format import ModuleInput
-from biolib.biolib_errors import BioLibError
+from biolib.biolib_errors import BioLibError, JobResultNonZeroExitCodeError
 from biolib.biolib_logging import logger
 from biolib.compute_node.job_worker.job_worker import JobWorker
 from biolib.experiments.experiment import Experiment
@@ -59,10 +59,15 @@ class BioLibApp:
         machine_count: Optional[int] = None,
         experiment: Optional[str] = None,
         temporary_client_secrets: Optional[Dict[str, str]] = None,
+        check: bool = False,
+        stream_logs: bool = False,
     ) -> Job:
         if experiment_id and experiment:
             raise ValueError('Only one of experiment_id and experiment can be specified')
 
+        if check and not blocking:
+            raise ValueError('The argument "check" cannot be True when blocking is False')
+
         if not experiment_id:
             experiment_instance = Experiment(experiment) if experiment else Experiment.get_experiment_in_context()
             experiment_id = experiment_instance.uuid if experiment_instance else None
@@ -100,10 +105,15 @@ class BioLibApp:
                 utils.STREAM_STDOUT = True
 
             enable_print = bool(
-                utils.STREAM_STDOUT
+                (utils.STREAM_STDOUT or stream_logs)
                 and (self._app_version.get('main_output_file') or self._app_version.get('stdout_render_type') == 'text')
             )
-            job._stream_logs(enable_print=enable_print)  # pylint: disable=protected-access
+            job._stream_logs(enable_print=enable_print) # pylint: disable=protected-access
+
+            if check:
+                exit_code = job.get_exit_code()
+                if exit_code != 0:
+                    raise JobResultNonZeroExitCodeError(exit_code)
 
         return job
 

biolib/biolib_errors.py

@@ -43,3 +43,12 @@ class JobResultNotFound(JobResultError):
 
 class JobResultPermissionError(JobResultError):
     pass
+
+
+class JobResultNonZeroExitCodeError(JobResultError):
+    """Raised when an app returns a non-zero exit code and check=True."""
+    def __init__(self, exit_code: int, message: Optional[str] = None):
+        self.exit_code = exit_code
+        super().__init__(
+            message or f'App returned non-zero exit code: {exit_code}'
+        )

{pybiolib-1.2.366.dist-info → pybiolib-1.2.408.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.366
+Version: 1.2.408
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.366.dist-info → pybiolib-1.2.408.dist-info}/RECORD

@@ -29,7 +29,7 @@ biolib/_runtime/runtime.py,sha256=bZQ0m39R9jOBVAtlyvzDnOobKueOAQUCwMUZjDQnO7E,44
 biolib/api/__init__.py,sha256=mQ4u8FijqyLzjYMezMUUbbBGNB3iFmkNdjXnWPZ7Jlw,138
 biolib/api/client.py,sha256=EN3lDbbgWxw3aPDe8W5XIU6WkMfOHW7Dmsz-R6QqxAw,4176
 biolib/app/__init__.py,sha256=cdPtcfb_U-bxb9iSL4fCEq2rpD9OjkyY4W-Zw60B0LI,37
-biolib/app/app.py,sha256=mJafDLtnoX66egHF94NrUhmhzjpFzvRj2STh0RVGJCY,8862
+biolib/app/app.py,sha256=fWBIz9WXw4_dFPhFwdEpMIMG5-evt0s6oP937tSRsLw,9273
 biolib/app/search_apps.py,sha256=K4a41f5XIWth2BWI7OffASgIsD0ko8elCax8YL2igaY,1470
 biolib/biolib_api_client/__init__.py,sha256=E5EMa19wJoblwSdQPYrxc_BtIeRsAuO0L_jQweWw-Yk,182
 biolib/biolib_api_client/api_client.py,sha256=ohvbWbpresxLHFGPkvXACfmiTYsBk8RBx5XsBbLYg_M,7546
@@ -55,7 +55,7 @@ biolib/biolib_binary_format/system_status_update.py,sha256=aOELuQ0k-GtpaZTUxYd0G
 biolib/biolib_binary_format/utils.py,sha256=jq31QEShs7TSrSKZBr8jif-bJAwVzQrqVxmymL6crpU,5453
 biolib/biolib_docker_client/__init__.py,sha256=aBfA6mtWSI5dBEfNNMD6bIZzCPloW4ghKm0wqQiljdo,1481
 biolib/biolib_download_container.py,sha256=8TmBV8iv3bCvkNlHa1SSsc4zl0wX_eaxhfnW5rvFIh8,1779
-biolib/biolib_errors.py,sha256=xtdo3ybqnc0jhd959kVmBczFdBczrFMr8cZyd4hjKLk,842
+biolib/biolib_errors.py,sha256=eyQolC4oGi350BDEMOd-gAHYVqo2L2lYgv6c4ZdXPjQ,1184
 biolib/biolib_logging.py,sha256=S2y6fk7jjxZQMN2BtKkHBb4JbVQQSSU97T7ep4P_QCE,2855
 biolib/cli/__init__.py,sha256=0v3c_J-U0k46c5ZWeQjLG_kTaKDJm81LBxQpDO2B_aI,1286
 biolib/cli/auth.py,sha256=rpWGmXs6Fz6CGrO9K8ibPRszOdXG78Vig_boKaVCD9A,2082
@@ -118,8 +118,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.366.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.366.dist-info/METADATA,sha256=0VkWxDelNbXapivceuFPSl1TiSZa1myr6plhWi7HNRQ,1570
-pybiolib-1.2.366.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
-pybiolib-1.2.366.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.366.dist-info/RECORD,,
+pybiolib-1.2.408.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.408.dist-info/METADATA,sha256=04U3f4zWFYOFZCw_WBmpELSuomhQn0omc300cRMd9cQ,1570
+pybiolib-1.2.408.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
+pybiolib-1.2.408.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.408.dist-info/RECORD,,