pybiolib 1.2.342.dev1__py3-none-any.whl → 1.2.347__py3-none-any.whl

biolib/_internal/http_client.py

@@ -13,7 +13,7 @@ import urllib.request
 from biolib.biolib_logging import logger_no_user_data
 from biolib.typing_utils import Dict, Literal, Optional, Union, cast
 
-_HttpMethod = Literal['GET', 'POST', 'PATCH', 'PUT']
+_HttpMethod = Literal['GET', 'POST', 'PATCH', 'PUT', 'DELETE']
 
 
 def _create_ssl_context():

biolib/api/client.py

@@ -70,6 +70,19 @@ class ApiClient(HttpClient):
             url=self._get_absolute_url(path=path, query_params=params),
         )
 
+    def delete(
+        self,
+        path: str,
+        headers: OptionalHeaders = None,
+        retries: int = 0,
+    ) -> HttpResponse:
+        return self.request(
+            headers=self._get_headers(opt_headers=headers, authenticate=True),
+            method='DELETE',
+            retries=retries,
+            url=self._get_absolute_url(path=path, query_params=None),
+        )
+
     @staticmethod
     def _get_headers(opt_headers: OptionalHeaders, authenticate: bool) -> Dict[str, str]:
         # Only keep header keys with a value

biolib/experiments/experiment.py

@@ -90,9 +90,30 @@ class Experiment:
 
         print(f'All jobs of experiment {self.name} have finished')
 
-    def add_job(self, job_id: str) -> None:
+    def add_job(self, job: Optional[Union[Job, str]] = None, job_id: Optional[str] = None) -> None:
+        if job_id is not None:
+            print(
+                'WARNING: job_id argument is deprecated and may be removed in a future release.'
+                'Please use job argument instead.'
+            )
+        elif isinstance(job, Job):
+            job_id = job.id
+        elif isinstance(job, str):
+            job_id = job
+        elif job is None and job_id is None:
+            raise BioLibError('A job ID or job object must be provided to add job')
         api.client.patch(path=f'/jobs/{job_id}/', data={'experiment_uuid': self.uuid})
 
+    def remove_job(self, job: Union[Job, str]) -> None:
+        if isinstance(job, Job):
+            job_id = job.id
+        elif isinstance(job, str):
+            job_id = job
+        else:
+            raise BioLibError('A job ID or job object must be provided to remove job')
+
+        api.client.delete(path=f'/experiments/{self.uuid}/jobs/{job_id}/')
+
     def mount_files(self, mount_path: str) -> None:
         try:
             # Only attempt to import FUSE dependencies when strictly necessary

{pybiolib-1.2.342.dev1.dist-info → pybiolib-1.2.347.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.342.dev1
+Version: 1.2.347
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.342.dev1.dist-info → pybiolib-1.2.347.dist-info}/RECORD

@@ -8,7 +8,7 @@ biolib/_internal/data_record/remote_storage_endpoint.py,sha256=eCptuZ4DMAPnaNCVD
 biolib/_internal/file_utils.py,sha256=4jT6j7bB21c0JNn5BfnyWQib_zt0CVtJ_TiOFOStRcE,2604
 biolib/_internal/fuse_mount/__init__.py,sha256=B_tM6RM2dBw-vbpoHJC4X3tOAaN1H2RDvqYJOw3xFwg,55
 biolib/_internal/fuse_mount/experiment_fuse_mount.py,sha256=08aUdEq_bvqLBft_gSLjOClKDy5sBnMts1RfJf7AP_U,7012
-biolib/_internal/http_client.py,sha256=_uop4dwetHA5MvmxVqGzxV9w1Zl4peRVZXFiImuL2BA,6211
+biolib/_internal/http_client.py,sha256=9-3HG6LnLwJfrwjCeFj5XigHVH8Dzz6Dpr58IjQJHDo,6221
 biolib/_internal/lfs/__init__.py,sha256=gSWo_xg61UniYgD7yNYxeT4I9uaXBCBSi3_nmZjnPpE,35
 biolib/_internal/lfs/cache.py,sha256=pQS2np21rdJ6I3DpoOutnzPHpLOZgUIS8TMltUJk_k4,2226
 biolib/_internal/libs/__init__.py,sha256=Jdf4tNPqe_oIIf6zYml6TiqhL_02Vyqwge6IELrAFhw,98
@@ -27,7 +27,7 @@ biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd
 biolib/_internal/utils/multinode.py,sha256=-J3PEAK3NaOwCn--5T7vWHkA3yu5w9QhmuhkQcH-2wY,8229
 biolib/_runtime/runtime.py,sha256=bZQ0m39R9jOBVAtlyvzDnOobKueOAQUCwMUZjDQnO7E,4439
 biolib/api/__init__.py,sha256=mQ4u8FijqyLzjYMezMUUbbBGNB3iFmkNdjXnWPZ7Jlw,138
-biolib/api/client.py,sha256=_kmwaGI_-u7kOeWVCYmo-pD2K1imwEv9n2gNZRb5F-I,3790
+biolib/api/client.py,sha256=EN3lDbbgWxw3aPDe8W5XIU6WkMfOHW7Dmsz-R6QqxAw,4176
 biolib/app/__init__.py,sha256=cdPtcfb_U-bxb9iSL4fCEq2rpD9OjkyY4W-Zw60B0LI,37
 biolib/app/app.py,sha256=mJafDLtnoX66egHF94NrUhmhzjpFzvRj2STh0RVGJCY,8862
 biolib/app/search_apps.py,sha256=K4a41f5XIWth2BWI7OffASgIsD0ko8elCax8YL2igaY,1470
@@ -99,7 +99,7 @@ biolib/compute_node/webserver/webserver_types.py,sha256=2t8EaFKESnves3BA_NBdnS2y
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
 biolib/compute_node/webserver/worker_thread.py,sha256=0kb7RgwDSIzTZfjttUHelyAS8g7VPx1J1E7GbqYObu0,12288
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/experiments/experiment.py,sha256=m7FB7hot8CMOVrNyWGPB6FTkWQJwI0ytpIvtPxfoPME,7684
+biolib/experiments/experiment.py,sha256=V1_UtcDm2ydxDjOlk0N7bv1jGTAb06psflAYcqbo0sY,8559
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
 biolib/jobs/job.py,sha256=qXDjaI5YbxEHLYtF-vflfdz6j4AEb83ioqSZli5aOgM,20453
 biolib/jobs/job_result.py,sha256=rALHiKYNaC9lHi_JJqBob1RubzNLwG9Z386kwRJjd2M,5885
@@ -118,8 +118,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.342.dev1.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.342.dev1.dist-info/METADATA,sha256=-x0BG9aHSb30YX0pndYEJtgu5Zhy0vui7SVvOmncnEU,1575
-pybiolib-1.2.342.dev1.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
-pybiolib-1.2.342.dev1.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.342.dev1.dist-info/RECORD,,
+pybiolib-1.2.347.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.347.dist-info/METADATA,sha256=MMaf_ltA6Tg3gAgfrmO1W9bZeWMM3D6_fGQkgN1Ono8,1570
+pybiolib-1.2.347.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
+pybiolib-1.2.347.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.347.dist-info/RECORD,,