pybiolib 1.2.270__py3-none-any.whl → 1.2.308.dev1__py3-none-any.whl

biolib/compute_node/job_worker/executors/docker_executor.py

@@ -44,6 +44,8 @@ class DockerExecutor:
         self._send_system_exception = options['send_system_exception']
         self._send_stdout_and_stderr = options['send_stdout_and_stderr']
         self._random_docker_id = compute_node_utils.random_string(15)
+        self._reserved_system_ram = int(os.sysconf('SC_PAGE_SIZE') * os.sysconf('SC_PHYS_PAGES') * 0.06) + 500_000_000
+        logger_no_user_data.info(f"System RAM reserved: {self._reserved_system_ram}")
 
         if utils.IS_RUNNING_IN_CLOUD:
             self._compute_process_dir = os.getenv('BIOLIB_USER_DATA_PATH')
@@ -374,7 +376,9 @@ class DockerExecutor:
 
             if utils.IS_RUNNING_IN_CLOUD:
                 cloud_job = self._options['cloud_job']
-                create_container_args['mem_limit'] = f'{cloud_job["reserved_memory_in_bytes"] - 500_000_000}b'
+                create_container_args['mem_limit'] = (
+                    f'{cloud_job["reserved_memory_in_bytes"] - self._reserved_system_ram}b'
+                )
                 create_container_args['nano_cpus'] = cloud_job['reserved_cpu_in_nano_shares']
                 create_container_args['pids_limit'] = 10_000
 

{pybiolib-1.2.270.dist-info → pybiolib-1.2.308.dev1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.270
+Version: 1.2.308.dev1
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.270.dist-info → pybiolib-1.2.308.dev1.dist-info}/RECORD

@@ -76,7 +76,7 @@ biolib/compute_node/job_worker/cache_state.py,sha256=MwjSRzcJJ_4jybqvBL4xdgnDYSI
 biolib/compute_node/job_worker/cache_types.py,sha256=ajpLy8i09QeQS9dEqTn3T6NVNMY_YsHQkSD5nvIHccQ,818
 biolib/compute_node/job_worker/docker_image_cache.py,sha256=ansHIkJIq_EMW1nZNlW-RRLVVeKWTbzNICYaOHpKiRE,7460
 biolib/compute_node/job_worker/executors/__init__.py,sha256=bW6t1qi3PZTlHM4quaTLa8EI4ALTCk83cqcVJfJfJfE,145
-biolib/compute_node/job_worker/executors/docker_executor.py,sha256=97S0FH5cmDVh9k5bMdKw_oTbhlvWNMTYHlCWsMcTVr0,29118
+biolib/compute_node/job_worker/executors/docker_executor.py,sha256=J-wv7FTb_HJnfRdIByiOdtj18Fw5nYvVm-n0D1mrqwA,29377
 biolib/compute_node/job_worker/executors/docker_types.py,sha256=VhsU1DKtJjx_BbCkVmiPZPH4ROiL1ygW1Y_s1Kbpa2o,216
 biolib/compute_node/job_worker/executors/tars/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/compute_node/job_worker/executors/types.py,sha256=yP5gG39hr-DLnw9bOE--VHi-1arDbIYiGuV1rlTbbHI,1466
@@ -118,8 +118,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.270.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.270.dist-info/METADATA,sha256=4X3mMHFS8Na5DmbDm6-1QmUXJpG2MhbYm_ZQGi-2Eiw,1570
-pybiolib-1.2.270.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
-pybiolib-1.2.270.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.270.dist-info/RECORD,,
+pybiolib-1.2.308.dev1.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.308.dev1.dist-info/METADATA,sha256=6WoRYHdTlEI0k_8U3IJE2qBWy0B6syXR_-JDRy9661g,1575
+pybiolib-1.2.308.dev1.dist-info/WHEEL,sha256=IYZQI976HJqqOpQU6PHkJ8fb3tMNBFjg-Cn-pwAbaFM,88
+pybiolib-1.2.308.dev1.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.308.dev1.dist-info/RECORD,,