pybiolib 1.2.209__py3-none-any.whl → 1.2.216__py3-none-any.whl

biolib/compute_node/job_worker/executors/docker_executor.py

@@ -41,9 +41,6 @@ class DockerExecutor:
         self._is_cleaning_up = False
 
         self._absolute_image_uri = f"{utils.BIOLIB_SITE_HOSTNAME}/{self._options['module']['image_uri']}"
-        if self._options['job'].get('federated_job_uuid'):
-            self._absolute_image_uri = self._options['module']['absolute_image_uri']
-
         self._send_system_exception = options['send_system_exception']
         self._send_stdout_and_stderr = options['send_stdout_and_stderr']
         self._random_docker_id = compute_node_utils.random_string(15)
@@ -125,7 +122,7 @@ class DockerExecutor:
                 time.sleep(5 * retry_count)
             try:
                 start_time = time.time()
-                if utils.IS_RUNNING_IN_CLOUD and not self._options['job'].get('federated_job_uuid'):
+                if utils.IS_RUNNING_IN_CLOUD:
                     DockerImageCache().get(
                         image_uri=self._absolute_image_uri,
                         estimated_image_size_bytes=estimated_image_size_bytes,
@@ -136,7 +133,7 @@ class DockerExecutor:
                     try:
                         docker_client.images.get(self._absolute_image_uri)
                     except ImageNotFound:
-                        job_uuid = self._options['job'].get('federated_job_uuid') or self._options['job']['public_id']
+                        job_uuid = self._options['job']['public_id']
                         docker_client.images.pull(
                             self._absolute_image_uri,
                             auth_config={'username': 'biolib', 'password': f',{job_uuid}'},

biolib/compute_node/webserver/webserver.py

@@ -19,7 +19,11 @@ from biolib.typing_utils import Optional
 
 app = Flask(__name__)
 
-biolib_tmp_dir = tempfile.TemporaryDirectory()
+if utils.IS_RUNNING_IN_CLOUD:
+    _BIOLIB_TMP_DIR = '/biolib/tmp'
+    os.makedirs(_BIOLIB_TMP_DIR, exist_ok=True)
+else:
+    _BIOLIB_TMP_DIR = tempfile.TemporaryDirectory().name
 
 
 @app.route('/hello/')
@@ -41,7 +45,7 @@ def save_job():
         return jsonify({'job': 'Invalid job'}), 400
 
     job_id = saved_job['job']['public_id']
-    job_temporary_dir = os.path.join(biolib_tmp_dir.name, job_id)
+    job_temporary_dir = os.path.join(_BIOLIB_TMP_DIR, job_id)
     os.makedirs(job_temporary_dir)
     saved_job['BASE_URL'] = BiolibApiClient.get().base_url
     saved_job['job_temporary_dir'] = job_temporary_dir

{pybiolib-1.2.209.dist-info → pybiolib-1.2.216.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.209
+Version: 1.2.216
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.209.dist-info → pybiolib-1.2.216.dist-info}/RECORD

@@ -78,7 +78,7 @@ biolib/compute_node/job_worker/cache_state.py,sha256=MwjSRzcJJ_4jybqvBL4xdgnDYSI
 biolib/compute_node/job_worker/cache_types.py,sha256=ajpLy8i09QeQS9dEqTn3T6NVNMY_YsHQkSD5nvIHccQ,818
 biolib/compute_node/job_worker/docker_image_cache.py,sha256=ansHIkJIq_EMW1nZNlW-RRLVVeKWTbzNICYaOHpKiRE,7460
 biolib/compute_node/job_worker/executors/__init__.py,sha256=bW6t1qi3PZTlHM4quaTLa8EI4ALTCk83cqcVJfJfJfE,145
-biolib/compute_node/job_worker/executors/docker_executor.py,sha256=Ygt3JgJJ1QuQ4WBgUsu6AnjBtu4vtYFA5oI4x8U6jw8,28189
+biolib/compute_node/job_worker/executors/docker_executor.py,sha256=Rt_kpqpBmn6Ut4h-46nqc-g4Qhs4gtbNwEpLiOKOFOM,27939
 biolib/compute_node/job_worker/executors/docker_types.py,sha256=VhsU1DKtJjx_BbCkVmiPZPH4ROiL1ygW1Y_s1Kbpa2o,216
 biolib/compute_node/job_worker/executors/tars/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/compute_node/job_worker/executors/types.py,sha256=yP5gG39hr-DLnw9bOE--VHi-1arDbIYiGuV1rlTbbHI,1466
@@ -96,7 +96,7 @@ biolib/compute_node/socket_sender_thread.py,sha256=YgamPHeUm2GjMFGx8qk-99WlZhEs-
 biolib/compute_node/utils.py,sha256=M7i_WTyxbFM3Lri9RWZ_8FeQNYrQIWpKGLfp2I55oeY,4677
 biolib/compute_node/webserver/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/compute_node/webserver/gunicorn_flask_application.py,sha256=jPfR_YvNBekLUXWo_vHFV-FIwlb8s8tacKmGHvh93qc,914
-biolib/compute_node/webserver/webserver.py,sha256=15PkRyhtdtSgFDxa0z78aPO4ciZURsFqJYi-HtUmZF8,6494
+biolib/compute_node/webserver/webserver.py,sha256=o4kOAStsqThUtKlnRE-U5TP0JIYntuySDjU7PH310xg,6620
 biolib/compute_node/webserver/webserver_types.py,sha256=2t8EaFKESnves3BA_NBdnS2yAdo1qwamCFHiSt888nE,380
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
 biolib/compute_node/webserver/worker_thread.py,sha256=GRRBUqXdMKvbjyLQhYlqGIbFKeU2iiEXIe5IXi9wgdg,11806
@@ -120,8 +120,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.209.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.209.dist-info/METADATA,sha256=S5YPbQ5LyZ0kFQVu_4wZOiVzJo3Z4WRvCl-3tM3WLJ4,1558
-pybiolib-1.2.209.dist-info/WHEEL,sha256=Nq82e9rUAnEjt98J6MlVmMCZb-t9cYE2Ir1kpBmnWfs,88
-pybiolib-1.2.209.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.209.dist-info/RECORD,,
+pybiolib-1.2.216.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.216.dist-info/METADATA,sha256=c2wscSs5tFgJ-a2WLknbRy70BlrljRDnB032X4fl5fo,1558
+pybiolib-1.2.216.dist-info/WHEEL,sha256=Nq82e9rUAnEjt98J6MlVmMCZb-t9cYE2Ir1kpBmnWfs,88
+pybiolib-1.2.216.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.216.dist-info/RECORD,,