pybiolib 1.2.197__py3-none-any.whl → 1.2.209__py3-none-any.whl

biolib/compute_node/job_worker/executors/docker_executor.py

@@ -501,6 +501,10 @@ class DockerExecutor:
                 stdout=stdout,
             )
         except Exception as exception:
+            logger.error("Hit Error 23")
+            logger.exception("Error")
+            logger.error(str(exception))
+            time.sleep(3)
             raise ComputeProcessException(
                 exception,
                 SystemExceptionCodes.FAILED_TO_SERIALIZE_AND_SEND_MODULE_OUTPUT.value,

biolib/jobs/job.py

@@ -32,6 +32,7 @@ class Job:
     table_columns_to_row_map = OrderedDict(
         {
             'ID': {'key': 'uuid', 'params': {'width': 36}},
+            'Name': {'key': 'main_result.name', 'params': {}},
             'Application': {'key': 'app_uri', 'params': {}},
             'Status': {'key': 'state', 'params': {}},
             'Started At': {'key': 'started_at', 'params': {}},

biolib/tables.py

@@ -17,7 +17,16 @@ class BioLibTable:
         columns = [Column(header=header, **meta['params']) for header, meta in self.columns_to_row_map.items()]
         table = Table(*columns, title=self.title)
         for row in self.rows:
-            table.add_row(*[str(row[column['key']]) for column in self.columns_to_row_map.values()])
+            row_values: List[str] = []
+            for column in self.columns_to_row_map.values():
+                keys = column['key'].split('.')
+                value = row[keys[0]]
+                for key in keys[1:]:
+                    if not value or key not in value:
+                        continue
+                    value = value[key]
+                row_values.append(str(value))
+            table.add_row(*row_values)
         return table
 
     def print_table(self):

{pybiolib-1.2.197.dist-info → pybiolib-1.2.209.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.197
+Version: 1.2.209
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.197.dist-info → pybiolib-1.2.209.dist-info}/RECORD

@@ -78,7 +78,7 @@ biolib/compute_node/job_worker/cache_state.py,sha256=MwjSRzcJJ_4jybqvBL4xdgnDYSI
 biolib/compute_node/job_worker/cache_types.py,sha256=ajpLy8i09QeQS9dEqTn3T6NVNMY_YsHQkSD5nvIHccQ,818
 biolib/compute_node/job_worker/docker_image_cache.py,sha256=ansHIkJIq_EMW1nZNlW-RRLVVeKWTbzNICYaOHpKiRE,7460
 biolib/compute_node/job_worker/executors/__init__.py,sha256=bW6t1qi3PZTlHM4quaTLa8EI4ALTCk83cqcVJfJfJfE,145
-biolib/compute_node/job_worker/executors/docker_executor.py,sha256=qp8yc1BOkLNpSHbU04H314KVK_c_AjqVsuDrDlMTHbg,28043
+biolib/compute_node/job_worker/executors/docker_executor.py,sha256=Ygt3JgJJ1QuQ4WBgUsu6AnjBtu4vtYFA5oI4x8U6jw8,28189
 biolib/compute_node/job_worker/executors/docker_types.py,sha256=VhsU1DKtJjx_BbCkVmiPZPH4ROiL1ygW1Y_s1Kbpa2o,216
 biolib/compute_node/job_worker/executors/tars/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/compute_node/job_worker/executors/types.py,sha256=yP5gG39hr-DLnw9bOE--VHi-1arDbIYiGuV1rlTbbHI,1466
@@ -103,12 +103,12 @@ biolib/compute_node/webserver/worker_thread.py,sha256=GRRBUqXdMKvbjyLQhYlqGIbFKe
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/experiments/experiment.py,sha256=m7FB7hot8CMOVrNyWGPB6FTkWQJwI0ytpIvtPxfoPME,7684
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
-biolib/jobs/job.py,sha256=97OvImY2LewwGUTaAuBXsJJ8cUak0nOfjX7QIAgrtAA,20100
+biolib/jobs/job.py,sha256=et1slGdzczp112iJlHVp_7eTyhGoGSKxP31jgAwQuiM,20163
 biolib/jobs/job_result.py,sha256=rALHiKYNaC9lHi_JJqBob1RubzNLwG9Z386kwRJjd2M,5885
 biolib/jobs/types.py,sha256=ezvaoTANsWazK6PmfpYcqezdfjP7MNBEBfqIZGoZhz8,997
 biolib/runtime/__init__.py,sha256=MlRepA11n2H-3plB5rzWyyHK2JmP6PiaP3i6x3vt0mg,506
 biolib/sdk/__init__.py,sha256=8uyOAKt8-Xo11jAWXCg14NkE1u0FkOBC07L3V7wGsCg,1960
-biolib/tables.py,sha256=uxkbnXVZduZbz_1BRkpXgw_P71Puvsr8lW2ogt2VpPc,842
+biolib/tables.py,sha256=MmruV-nJLc3HbLVJBAiDuDCgS2-4oaUkpoCLLUNYbxQ,1173
 biolib/templates/__init__.py,sha256=Yx62sSyDCDesRQDQgmbDsLpfgEh93fWE8r9u4g2azXk,36
 biolib/templates/example_app.py,sha256=EB3E3RT4SeO_ii5nVQqJpi5KDGNE_huF1ub-e5ZFveE,715
 biolib/typing_utils.py,sha256=ntzrlyTkUaO2OtccLYzCAGztGdca0WT5fikJUmSkT-Y,148
@@ -120,8 +120,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.197.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.197.dist-info/METADATA,sha256=M3CE4EFJhUW5x4OLIjMFW79RdeyonCDwJrPVkywCWe0,1558
-pybiolib-1.2.197.dist-info/WHEEL,sha256=Nq82e9rUAnEjt98J6MlVmMCZb-t9cYE2Ir1kpBmnWfs,88
-pybiolib-1.2.197.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.197.dist-info/RECORD,,
+pybiolib-1.2.209.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.209.dist-info/METADATA,sha256=S5YPbQ5LyZ0kFQVu_4wZOiVzJo3Z4WRvCl-3tM3WLJ4,1558
+pybiolib-1.2.209.dist-info/WHEEL,sha256=Nq82e9rUAnEjt98J6MlVmMCZb-t9cYE2Ir1kpBmnWfs,88
+pybiolib-1.2.209.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.209.dist-info/RECORD,,