pybiolib 1.2.16__py3-none-any.whl → 1.2.29.dev1__py3-none-any.whl

biolib/_internal/utils/multinode.py

@@ -118,7 +118,9 @@ def fasta_batch_records(fasta_file, work_per_batch_min, work_per_residue=1, verb
     return batches
 
 
-def fasta_send_batches_biolib(app_url, batches, args, args_fasta='fasta', verbose=1):
+def fasta_send_batches_biolib(
+    app_url, batches, args, args_fasta='fasta', machine='cpu.large', stream_all_jobs=True, verbose=1
+):
     """
     Send jobs through pybiolib interface
     """
@@ -148,7 +150,7 @@ def fasta_send_batches_biolib(app_url, batches, args, args_fasta='fasta', verbos
             new_args_list = _args_dict_to_args_list(new_args)
 
             # Send job
-            job = current_app.cli(args=new_args_list, blocking=False)
+            job = current_app.cli(args=new_args_list, blocking=False, machine=machine)
             job_list.append(job)
 
             # Job stats
@@ -160,7 +162,9 @@ def fasta_send_batches_biolib(app_url, batches, args, args_fasta='fasta', verbos
     # Stream job output at a time
     print('Streaming job outputs ...')
     for i, job in enumerate(job_list):
-        job.stream_logs()
+        # Try to print if verbose. Always on first job, otherwise only if stream_all_jobs set
+        if (i == 0 and verbose) or (stream_all_jobs and verbose):
+            job.stream_logs()
 
         # Check if job succeeded
         assert job.get_exit_code() == 0, f'Job failed with exit code {job.get_exit_code()}'

{pybiolib-1.2.16.dist-info → pybiolib-1.2.29.dev1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.16
+Version: 1.2.29.dev1
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.16.dist-info → pybiolib-1.2.29.dev1.dist-info}/RECORD

@@ -23,7 +23,7 @@ biolib/_internal/types/experiment.py,sha256=D94iBdn2nS92lRW-TOs1a2WKXJD5ZtmzL4yp
 biolib/_internal/types/resource.py,sha256=G-vPkZoe4Um6FPxsQZtRzAlbSW5sDW4NFkbjn21I3V4,372
 biolib/_internal/types/typing.py,sha256=D4EKKEe7kDx0K6lJi-H_XLtk-8w6nu2fdqn9bvzI-Xo,288
 biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd3As7c,630
-biolib/_internal/utils/multinode.py,sha256=7RBW620gZeNQ-vocwsxaVAog9ryDdqJIsBpSqxpLL8c,8049
+biolib/_internal/utils/multinode.py,sha256=zWrQhcVK5u_xdWX2oIM-D_2fINqNPlqF_h71fu4K8LY,8279
 biolib/_runtime/runtime.py,sha256=oVgTnDDJv9L4BUP1_sd0oAj4LLyyiPSQdhp7ixWARvw,2923
 biolib/api/__init__.py,sha256=mQ4u8FijqyLzjYMezMUUbbBGNB3iFmkNdjXnWPZ7Jlw,138
 biolib/api/client.py,sha256=FRpdH5aI187b_I_4HUNi680v4iOP65z5f2RcUo8D8MA,3559
@@ -117,8 +117,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=ZQFcaE37B2dtucN2zDjOmdya_X0ITc1zBFZJNQY13XA,5183
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.16.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.16.dist-info/METADATA,sha256=0M98sCf8hfo8Rh7qo5ikBTIFJcRuQjvWmWeqvHt_69o,1506
-pybiolib-1.2.16.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.2.16.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.16.dist-info/RECORD,,
+pybiolib-1.2.29.dev1.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.29.dev1.dist-info/METADATA,sha256=dTLBYuxUBiloRqxIjMls-rsEg48Jhs9BRMaYq9O7CK0,1511
+pybiolib-1.2.29.dev1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.2.29.dev1.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.29.dev1.dist-info/RECORD,,