pybiolib 1.2.1642__py3-none-any.whl → 1.2.1727__py3-none-any.whl
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- biolib/_data_record/data_record.py +79 -15
- biolib/_index/index.py +1 -1
- biolib/_internal/data_record/push_data.py +64 -15
- biolib/_internal/utils/__init__.py +15 -0
- biolib/_internal/utils/auth.py +46 -0
- biolib/_runtime/runtime.py +1 -1
- biolib/_shared/types/__init__.py +8 -3
- biolib/_shared/types/resource.py +21 -1
- biolib/_shared/types/resource_permission.py +1 -1
- biolib/_shared/types/resource_version.py +8 -2
- biolib/api/client.py +3 -47
- biolib/app/app.py +1 -10
- biolib/biolib_api_client/api_client.py +3 -47
- biolib/cli/data_record.py +65 -0
- biolib/cli/init.py +39 -1
- biolib/cli/run.py +8 -5
- biolib/compute_node/job_worker/job_worker.py +2 -2
- biolib/compute_node/remote_host_proxy.py +18 -16
- biolib/experiments/experiment.py +13 -0
- biolib/utils/multipart_uploader.py +24 -18
- pybiolib-1.2.1727.dist-info/METADATA +41 -0
- {pybiolib-1.2.1642.dist-info → pybiolib-1.2.1727.dist-info}/RECORD +50 -50
- {pybiolib-1.2.1642.dist-info → pybiolib-1.2.1727.dist-info}/WHEEL +1 -1
- pybiolib-1.2.1727.dist-info/entry_points.txt +2 -0
- biolib/_shared/types/resource_types.py +0 -18
- pybiolib-1.2.1642.dist-info/METADATA +0 -52
- pybiolib-1.2.1642.dist-info/entry_points.txt +0 -3
- {pybiolib-1.2.1642.dist-info → pybiolib-1.2.1727.dist-info}/licenses/LICENSE +0 -0
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Metadata-Version: 2.4
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Name: pybiolib
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Version: 1.2.1642
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Summary: BioLib Python Client
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License: MIT
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License-File: LICENSE
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Keywords: biolib
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Author: biolib
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Author-email: hello@biolib.com
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Requires-Python: >=3.6.3,<4.0.0
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Classifier: License :: OSI Approved :: MIT License
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Classifier: Operating System :: OS Independent
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.7
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Classifier: Programming Language :: Python :: 3.8
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Classifier: Programming Language :: Python :: 3.9
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Classifier: Programming Language :: Python :: 3.14
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Provides-Extra: compute-node
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Requires-Dist: appdirs (>=1.4.3)
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Requires-Dist: click (>=8.0.0)
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Requires-Dist: docker (>=5.0.3)
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Requires-Dist: flask (>=2.0.1) ; extra == "compute-node"
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Requires-Dist: gunicorn (>=20.1.0) ; extra == "compute-node"
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Requires-Dist: importlib-metadata (>=1.6.1)
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Requires-Dist: pyyaml (>=5.3.1)
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Requires-Dist: rich (>=12.4.4)
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Requires-Dist: typing-extensions (>=4.1.0) ; python_version < "3.11"
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Project-URL: Homepage, https://github.com/biolib
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Description-Content-Type: text/markdown
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# PyBioLib
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PyBioLib is a Python package for running BioLib applications from Python scripts and the command line.
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### Python Example
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```python
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# pip3 install -U pybiolib
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import biolib
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samtools = biolib.load('samtools/samtools')
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print(samtools.cli(args='--help'))
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```
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### Command Line Example
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```bash
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pip3 install -U pybiolib
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biolib run samtools/samtools --help
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```
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