pybiolib 1.2.163.dev1__py3-none-any.whl → 1.2.165.dev1__py3-none-any.whl

biolib/_runtime/runtime.py

@@ -1,11 +1,11 @@
 import json
-import logging
-import os
 import re
+from pathlib import Path
 from typing import Optional
 
 from biolib import api
 from biolib._internal.runtime import BioLibRuntimeError, BioLibRuntimeNotRecognizedError, RuntimeJobDataDict
+from biolib.biolib_logging import logger
 from biolib.typing_utils import cast
 from biolib.utils.seq_util import SeqUtil
 
@@ -68,20 +68,15 @@ class Runtime:
         if detecting a BioLib generated name, use ID of the first sequence in the fasta file
         """
 
-        def file_path_to_stem(file_path):
-            return os.path.splitext(os.path.basename(file_path))[0]
-
         # Set job name to first header if FASTA text input (random BioLib file) detected
         if re.match('^input_[A-Za-z0-9]+.*', path_to_fasta):
             first_id = next(SeqUtil.parse_fasta(path_to_fasta)).id
-            job_name = first_id.replace(' ', '_')[:60]
-
+            result_name = first_id.replace(' ', '_')[:60]
         else:
-            job_name = file_path_to_stem(path_to_fasta)
-
-        logging.debug(f"Setting job name to '{job_name}' from {path_to_fasta}")
+            result_name = Path(path_to_fasta).stem
 
-        Runtime.set_result_name_prefix(job_name)
+        logger.debug(f'Setting result name to "{result_name}" from {path_to_fasta}')
+        Runtime.set_result_name_prefix(result_name)
 
     @staticmethod
     def create_result_note(note: str) -> None:

biolib/compute_node/remote_host_proxy.py

@@ -300,6 +300,15 @@ http {{
             proxy_ssl_server_name    on;
         }}
 
+        location /api/resources/versions/ {{
+            proxy_pass               https://$upstream_hostname$request_uri;
+            proxy_set_header         authorization "";
+            proxy_set_header         compute-node-auth-token "{compute_node_auth_token}";
+            proxy_set_header         job-uuid "{self._job_uuid}";
+            proxy_set_header         cookie "";
+            proxy_ssl_server_name    on;
+        }}
+
         location /api/ {{
             proxy_pass               https://$upstream_hostname$request_uri;
             proxy_set_header         authorization "";

{pybiolib-1.2.163.dev1.dist-info → pybiolib-1.2.165.dev1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.2.163.dev1
+Version: 1.2.165.dev1
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.2.163.dev1.dist-info → pybiolib-1.2.165.dev1.dist-info}/RECORD

@@ -26,7 +26,7 @@ biolib/_internal/types/resource_version.py,sha256=sLxViYXloDDUhTDFgjegiQCj097OM1
 biolib/_internal/types/typing.py,sha256=D4EKKEe7kDx0K6lJi-H_XLtk-8w6nu2fdqn9bvzI-Xo,288
 biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd3As7c,630
 biolib/_internal/utils/multinode.py,sha256=zWrQhcVK5u_xdWX2oIM-D_2fINqNPlqF_h71fu4K8LY,8279
-biolib/_runtime/runtime.py,sha256=qV706-ZaBihrxSzD9ks62mbllJ3ruCoa6Ecf2zF7naA,3997
+biolib/_runtime/runtime.py,sha256=b6AnHtfJ2DmEspC02sOGLt7VjienFKWaiR2PmMKnC38,3931
 biolib/api/__init__.py,sha256=mQ4u8FijqyLzjYMezMUUbbBGNB3iFmkNdjXnWPZ7Jlw,138
 biolib/api/client.py,sha256=FRpdH5aI187b_I_4HUNi680v4iOP65z5f2RcUo8D8MA,3559
 biolib/app/__init__.py,sha256=cdPtcfb_U-bxb9iSL4fCEq2rpD9OjkyY4W-Zw60B0LI,37
@@ -89,7 +89,7 @@ biolib/compute_node/job_worker/large_file_system.py,sha256=XXqRlVtYhs-Ji9zQGIk5K
 biolib/compute_node/job_worker/mappings.py,sha256=Z48Kg4nbcOvsT2-9o3RRikBkqflgO4XeaWxTGz-CNvI,2499
 biolib/compute_node/job_worker/utilization_reporter_thread.py,sha256=7tm5Yk9coqJ9VbEdnO86tSXI0iM0omwIyKENxdxiVXk,8575
 biolib/compute_node/job_worker/utils.py,sha256=wgxcIA8yAhUPdCwyvuuJ0JmreyWmmUoBO33vWtG60xg,1282
-biolib/compute_node/remote_host_proxy.py,sha256=eTT7x7ht_cxXMQ-0yXCvhKZW6mKeYM4KrfBf75KTbc8,15651
+biolib/compute_node/remote_host_proxy.py,sha256=aRo27m6KtNVLJm1nJSNv4ZKqdRj3E4hgaJ1m_912D28,16085
 biolib/compute_node/socker_listener_thread.py,sha256=T5_UikA3MB9bD5W_dckYLPTgixh72vKUlgbBvj9dbM0,1601
 biolib/compute_node/socket_sender_thread.py,sha256=YgamPHeUm2GjMFGx8qk-99WlZhEs-kAb3q_2O6qByig,971
 biolib/compute_node/utils.py,sha256=M7i_WTyxbFM3Lri9RWZ_8FeQNYrQIWpKGLfp2I55oeY,4677
@@ -119,8 +119,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.163.dev1.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.163.dev1.dist-info/METADATA,sha256=JK1zdgar9NsD7Wv30JWkX3NNIzcKLQHQVT-Hy6n-I38,1512
-pybiolib-1.2.163.dev1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.2.163.dev1.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.163.dev1.dist-info/RECORD,,
+pybiolib-1.2.165.dev1.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.165.dev1.dist-info/METADATA,sha256=TibDU4nqAO4oHJ5use3iN1D2AflfMyfwk2rV73hkVAg,1512
+pybiolib-1.2.165.dev1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.2.165.dev1.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.165.dev1.dist-info/RECORD,,