pybiolib 1.2.1308__py3-none-any.whl → 1.2.1318__py3-none-any.whl

biolib/jobs/job.py

@@ -498,11 +498,17 @@ class Result:
             stdout_and_stderr_package = base64.b64decode(stdout_and_stderr_package_b64)
             stdout_and_stderr = StdoutAndStderr(stdout_and_stderr_package).deserialize()
 
-            sys.stdout.write(stdout_and_stderr.decode())
-            if not IS_RUNNING_IN_NOTEBOOK:  # for some reason flushing in jupyter notebooks breaks \r handling
-                sys.stdout.flush()
+            if IS_RUNNING_IN_NOTEBOOK:
+                sys.stdout.write(stdout_and_stderr.decode(encoding='utf-8', errors='replace'))
+            else:
+                sys.stdout.buffer.write(stdout_and_stderr)
+                # Note: we avoid flush() in notebook as that breaks \r handling
+                sys.stdout.buffer.flush()
         # flush after having processed all packages
-        sys.stdout.flush()
+        if IS_RUNNING_IN_NOTEBOOK:
+            sys.stdout.flush()
+        else:
+            sys.stdout.buffer.flush()
 
     def show(self) -> None:
         self._refetch_job_dict()
@@ -522,11 +528,19 @@ class Result:
             logger.info(f'--- The result {self.id} has already completed (no streaming will take place) ---')
             logger.info('--- The stdout log is printed below: ---')
             sys.stdout.flush()
-            print(self.get_stdout().decode(), file=sys.stdout)
-            sys.stdout.flush()
+            if IS_RUNNING_IN_NOTEBOOK:
+                sys.stdout.write(self.get_stdout().decode(encoding='utf-8', errors='replace'))
+                sys.stdout.flush()
+            else:
+                sys.stdout.buffer.write(self.get_stdout())
+                sys.stdout.buffer.flush()
             logger.info('--- The stderr log is printed below: ---')
-            print(self.get_stderr().decode(), file=sys.stderr)
-            sys.stderr.flush()
+            if IS_RUNNING_IN_NOTEBOOK:
+                sys.stderr.write(self.get_stderr().decode(encoding='utf-8', errors='replace'))
+                sys.stderr.flush()
+            else:
+                sys.stderr.buffer.write(self.get_stderr())
+                sys.stderr.buffer.flush()
             logger.info(f'--- The job {self.id} has already completed. Its output was printed above. ---')
             return
 

{pybiolib-1.2.1308.dist-info → pybiolib-1.2.1318.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pybiolib
-Version: 1.2.1308
+Version: 1.2.1318
 Summary: BioLib Python Client
 License: MIT
 License-File: LICENSE

{pybiolib-1.2.1308.dist-info → pybiolib-1.2.1318.dist-info}/RECORD

@@ -142,7 +142,7 @@ biolib/compute_node/webserver/worker_thread.py,sha256=7uD9yQPhePYvP2HCJ27EeZ_h6p
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/experiments/experiment.py,sha256=4g1xMYmfp5yzSOdwjf3pUUULF9QjqBJb4uQ25FHrFrk,13688
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
-biolib/jobs/job.py,sha256=aC3MfyNOC3z1HEK60OASjaS23Bwq0z6Wkjty56JFj7o,29065
+biolib/jobs/job.py,sha256=X7F_jCwAwtPcI1qu-oLamZNzt1IVSIeOPWlax1ztfAM,29674
 biolib/jobs/job_result.py,sha256=_xqQu9z9BqPQrU6tjqKPuKlQDt5W0Zw5xiQvzEBkDyE,5266
 biolib/jobs/types.py,sha256=rFs6bQWsNI-nb1Hu9QzOW2zFZ8bOVt7ax4UpGVASxVA,1034
 biolib/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -158,8 +158,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=rImaghQGuIqTVWks6b9P2yKuN34uePUYPUFW_Wyoa4A,6737
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.1308.dist-info/METADATA,sha256=NdCjH6DwZEd01xTKrtuRLcYRLMt7wk5ZYeVBKgPtZ_8,1644
-pybiolib-1.2.1308.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
-pybiolib-1.2.1308.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.1308.dist-info/licenses/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.1308.dist-info/RECORD,,
+pybiolib-1.2.1318.dist-info/METADATA,sha256=Kfin2a-7v8pg6206XqZNFcKTERbw6IVRCvIhR-yb-0E,1644
+pybiolib-1.2.1318.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+pybiolib-1.2.1318.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.1318.dist-info/licenses/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.1318.dist-info/RECORD,,