pybiolib 1.2.1056__py3-none-any.whl → 1.2.1727__py3-none-any.whl

{pybiolib-1.2.1056.dist-info → pybiolib-1.2.1727.dist-info}/RECORD

@@ -1,25 +1,38 @@
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@@ -28,51 +41,58 @@ biolib/_internal/templates/copilot_template/.github/prompts/biolib_app_inputs.pr
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@@ -81,82 +101,80 @@ biolib/biolib_api_client/user_state.py,sha256=XcgWV-MgVk88mIlMmnu8yHxMu8OCaw8o0t
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{pybiolib-1.2.1056.dist-info → pybiolib-1.2.1727.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.1.3
+Generator: hatchling 1.28.0
 Root-Is-Purelib: true
 Tag: py3-none-any

pybiolib-1.2.1727.dist-info/entry_points.txt

@@ -0,0 +1,2 @@
+[console_scripts]
+biolib = biolib:call_cli

biolib/_internal/types/__init__.py

@@ -1,6 +0,0 @@
-from .app import *  # noqa: F403
-from .data_record import *  # noqa: F403
-from .experiment import *  # noqa: F403
-from .resource import *  # noqa: F403
-from .resource_permission import *  # noqa: F403
-from .resource_version import *  # noqa: F403

biolib/_internal/types/resource.py

@@ -1,18 +0,0 @@
-from .app import AppSlimDict
-from .data_record import DataRecordSlimDict
-from .experiment import DeprecatedExperimentDict
-from .typing import Optional, TypedDict
-
-
-class ResourceDict(TypedDict):
-    uuid: str
-    uri: str
-    name: str
-    created_at: str
-    description: str
-
-
-class ResourceDetailedDict(ResourceDict):
-    app: Optional[AppSlimDict]
-    data_record: Optional[DataRecordSlimDict]
-    experiment: Optional[DeprecatedExperimentDict]

biolib/utils/app_uri.py

@@ -1,57 +0,0 @@
-import re
-
-from biolib.biolib_errors import BioLibError
-from biolib.typing_utils import TypedDict, Optional
-
-
-class SemanticVersion(TypedDict):
-    major: int
-    minor: int
-    patch: int
-
-
-class AppUriParsed(TypedDict):
-    account_handle_normalized: str
-    app_name_normalized: Optional[str]
-    app_name: Optional[str]
-    resource_name_prefix: Optional[str]
-    version: Optional[SemanticVersion]
-
-
-def normalize(string: str) -> str:
-    return string.replace('-', '_').lower()
-
-
-# Mainly copied from backend
-def parse_app_uri(uri: str, use_account_as_name_default: bool = True) -> AppUriParsed:
-    uri_regex = r'^(@(?P<resource_name_prefix>[\w._-]+)/)?(?P<account_handle>[\w-]+)(/(?P<app_name>[\w-]+))?' \
-                r'(:(?P<version>(?P<major>0|[1-9]\d*)\.(?P<minor>0|[1-9]\d*)\.(?P<patch>0|[1-9]\d*)))?$'
-
-    uri_without_trailing_asterisk_version = uri[:-2] if uri.endswith(':*') else uri
-    matches = re.search(uri_regex, uri_without_trailing_asterisk_version)
-    if matches is None:
-        raise BioLibError(f"Could not parse app uri '{uri}', uri did not match regex")
-
-    resource_name_prefix: Optional[str] = matches.group('resource_name_prefix')
-    account_handle_normalized: str = normalize(matches.group('account_handle'))
-    app_name: Optional[str] = matches.group('app_name')
-
-    # Default to account_handle if app_name is not supplied
-    if app_name:
-        app_name_normalized = normalize(app_name)
-    elif use_account_as_name_default:
-        app_name_normalized = account_handle_normalized
-    else:
-        app_name_normalized = None
-
-    return AppUriParsed(
-        resource_name_prefix=resource_name_prefix.lower() if resource_name_prefix is not None else 'biolib.com',
-        account_handle_normalized=account_handle_normalized,
-        app_name_normalized=app_name_normalized,
-        app_name=app_name if app_name is not None or not use_account_as_name_default else account_handle_normalized,
-        version=None if not matches.group('version') else SemanticVersion(
-            major=int(matches.group('major')),
-            minor=int(matches.group('minor')),
-            patch=int(matches.group('patch')),
-        )
-    )

pybiolib-1.2.1056.dist-info/METADATA

@@ -1,50 +0,0 @@
-Metadata-Version: 2.3
-Name: pybiolib
-Version: 1.2.1056
-Summary: BioLib Python Client
-License: MIT
-Keywords: biolib
-Author: biolib
-Author-email: hello@biolib.com
-Requires-Python: >=3.6.3,<4.0.0
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.7
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: 3.13
-Provides-Extra: compute-node
-Requires-Dist: appdirs (>=1.4.3)
-Requires-Dist: click (>=8.0.0)
-Requires-Dist: docker (>=5.0.3)
-Requires-Dist: flask (>=2.0.1) ; extra == "compute-node"
-Requires-Dist: gunicorn (>=20.1.0) ; extra == "compute-node"
-Requires-Dist: importlib-metadata (>=1.6.1)
-Requires-Dist: pyyaml (>=5.3.1)
-Requires-Dist: rich (>=12.4.4)
-Requires-Dist: typing-extensions (>=4.1.0) ; python_version < "3.11"
-Project-URL: Homepage, https://github.com/biolib
-Description-Content-Type: text/markdown
-
-# PyBioLib
-
-PyBioLib is a Python package for running BioLib applications from Python scripts and the command line.
-
-### Python Example
-```python
-# pip3 install -U pybiolib
-import biolib
-samtools = biolib.load('samtools/samtools')
-print(samtools.cli(args='--help'))
-```
-
-### Command Line Example
-```bash
-pip3 install -U pybiolib
-biolib run samtools/samtools --help
-```
-

pybiolib-1.2.1056.dist-info/entry_points.txt

@@ -1,3 +0,0 @@
-[console_scripts]
-biolib=biolib:call_cli
-