pybiolib 1.2.1056__py3-none-any.whl → 1.2.1642__py3-none-any.whl

{pybiolib-1.2.1056.dist-info → pybiolib-1.2.1642.dist-info}/RECORD

@@ -1,23 +1,28 @@
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@@ -28,51 +33,60 @@ biolib/_internal/templates/copilot_template/.github/prompts/biolib_app_inputs.pr
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@@ -81,10 +95,10 @@ biolib/biolib_api_client/user_state.py,sha256=XcgWV-MgVk88mIlMmnu8yHxMu8OCaw8o0t
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 biolib/biolib_binary_format/file_in_container.py,sha256=j1eEPRxf_ew8I6G8sDiiZZxn4Wx1ppagfM9K8zTDG4U,3591
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 biolib/biolib_binary_format/module_output_v2.py,sha256=J5ZO5gCSeudpE12EVDrjYrNTS2DwgszY-SVXT7Qjuyg,5913
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@@ -94,17 +108,18 @@ biolib/biolib_docker_client/__init__.py,sha256=aBfA6mtWSI5dBEfNNMD6bIZzCPloW4ghK
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+biolib/cli/__init__.py,sha256=A_AATNYLH7exu332OYds1PrqOAuK1sU5wDmYYY4tMvM,1352
 biolib/cli/auth.py,sha256=p9ZGY6ld2rnMbpsuRskvIQJNUHlSgYgcLTDsYGyUwyw,1407
-biolib/cli/data_record.py,sha256=t8DfJK2EZ_SNZ9drDA_N5Jqy8DNwf9f5SlFrIaOvtv0,3501
+biolib/cli/data_record.py,sha256=ypNr-MK_3bvJv0wkZ4V1p_4cU9gfGvFoeXTtghnhrQE,4078
 biolib/cli/download_container.py,sha256=HIZVHOPmslGE5M2Dsp9r2cCkAEJx__vcsDz5Wt5LRos,483
+biolib/cli/index.py,sha256=UeE4lo4NYL7-3DGrJyv1OvbdKmTlKMwdArliHTmIzPY,1081
 biolib/cli/init.py,sha256=oGo178h_GlDieWjBqHDLAejeUhVKm5ZJnI_o2YqbEZ0,8366
-biolib/cli/lfs.py,sha256=z2qHUwink85mv9yDgifbVKkVwuyknGhMDTfly_gLKJM,4151
+biolib/cli/lfs.py,sha256=mCwziiuzhsZW5UdpsVETDlVUvmO71gHKsV2D4wJ2qUY,4164
 biolib/cli/push.py,sha256=J8BswMYVeTacZBHbm4K4a2XbS_I8kvfgRZLoby2wi3I,1695
 biolib/cli/run.py,sha256=RAAXbIx8Bi-4fNkEoz2ODJ0fEtyS7VxD3dkc2fVZwjY,2150
 biolib/cli/runtime.py,sha256=Xv-nrma5xX8NidWcvbUKcUvuN5TCarZa4A8mPVmF-z0,361
 biolib/cli/sdk.py,sha256=XisJwTft4QDB_99eGDlz-WBqqRwIqkVg7HyvxWtOG8w,471
-biolib/cli/start.py,sha256=rg8VVY8rboFhf1iQo3zE3WA5oh_R1VWWfYJEO1gMReY,1737
+biolib/cli/start.py,sha256=BcjE4MRRLhBJULuSYQY0e7gMHudw7W-yFcz9klJ3xjo,2287
 biolib/compute_node/.gitignore,sha256=GZdZ4g7HftqfOfasFpBC5zV1YQAbht1a7EzcXD6f3zg,45
 biolib/compute_node/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/compute_node/cloud_utils/__init__.py,sha256=VZSScLqaz5tg_gpMvWgwkAu9Qf-vgW_QHRoDOaAmU44,67
@@ -114,49 +129,52 @@ biolib/compute_node/job_worker/cache_state.py,sha256=MwjSRzcJJ_4jybqvBL4xdgnDYSI
 biolib/compute_node/job_worker/cache_types.py,sha256=ajpLy8i09QeQS9dEqTn3T6NVNMY_YsHQkSD5nvIHccQ,818
 biolib/compute_node/job_worker/docker_image_cache.py,sha256=ansHIkJIq_EMW1nZNlW-RRLVVeKWTbzNICYaOHpKiRE,7460
 biolib/compute_node/job_worker/executors/__init__.py,sha256=bW6t1qi3PZTlHM4quaTLa8EI4ALTCk83cqcVJfJfJfE,145
-biolib/compute_node/job_worker/executors/docker_executor.py,sha256=FFN4dn3mV19u6imT8e4vjpfDIxX9d3bpq9x2JPVOAus,31811
-biolib/compute_node/job_worker/executors/docker_types.py,sha256=VhsU1DKtJjx_BbCkVmiPZPH4ROiL1ygW1Y_s1Kbpa2o,216
+biolib/compute_node/job_worker/executors/docker_executor.py,sha256=PS7c1DMEcwv5Gsrh0mjwlAuEf7BTSNooW9XODqXofRE,32896
+biolib/compute_node/job_worker/executors/docker_types.py,sha256=Hh8SwQYBLdIMGWgITwD2fzoo_sbW2ESx1G8j9Zq2n30,216
 biolib/compute_node/job_worker/executors/tars/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/compute_node/job_worker/executors/types.py,sha256=wbjWZZ2f9FttjqUCCOeZmn7n3L3Hu-7-2PZJ3BVf_Ps,1626
+biolib/compute_node/job_worker/executors/types.py,sha256=dlp7p8KKkd19nC68o-RuAzRBhpdYFMWKg-__LFjvscs,1611
 biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py,sha256=_cvEiZbOwfkv6fYmfrvdi_FVviIEYr_dSClQcOQaUWM,1198
 biolib/compute_node/job_worker/job_max_runtime_timer_thread.py,sha256=K_xgz7IhiIjpLlXRk8sqaMyLoApcidJkgu29sJX0gb8,1174
 biolib/compute_node/job_worker/job_storage.py,sha256=J6B5wkBo3cqmT1AV-qJnm2Lt9Qmcp3qn-1AabjO9m60,4686
-biolib/compute_node/job_worker/job_worker.py,sha256=MpYRikixXBF6iZI0m5xW7vrJ-cdkpO_AQfElZaKoI_Q,29542
-biolib/compute_node/job_worker/large_file_system.py,sha256=XXqRlVtYhs-Ji9zQGIk5KQPXFO_Q5jJH0nnlw4GkeMY,10461
+biolib/compute_node/job_worker/job_worker.py,sha256=e2BnG8gQCDtllUcSu6JOiGotkQUGXZNdTeyWytJ-14w,32106
+biolib/compute_node/job_worker/large_file_system.py,sha256=Xe_LILVfTD9LXb-0HwLqGsp1fWiI-pU55BqgJ-6t8-0,10357
 biolib/compute_node/job_worker/mappings.py,sha256=Z48Kg4nbcOvsT2-9o3RRikBkqflgO4XeaWxTGz-CNvI,2499
-biolib/compute_node/job_worker/utilization_reporter_thread.py,sha256=7tm5Yk9coqJ9VbEdnO86tSXI0iM0omwIyKENxdxiVXk,8575
+biolib/compute_node/job_worker/network_alloc.py,sha256=b2xNrqHaVRKCMcFyZepQAuNsBWCzHMDTPeacBdo029s,3586
+biolib/compute_node/job_worker/network_buffer.py,sha256=YIiYz_QZNK7O8SSFzLZf2i7drTk1ewd_gvjg9NgG5LQ,9051
+biolib/compute_node/job_worker/utilization_reporter_thread.py,sha256=Tho8GdYVS93Jb5cJjuN3O0qGQ0JIlxabiaGfTp1ksV0,8594
 biolib/compute_node/job_worker/utils.py,sha256=wgxcIA8yAhUPdCwyvuuJ0JmreyWmmUoBO33vWtG60xg,1282
-biolib/compute_node/remote_host_proxy.py,sha256=IBkBeljiFEos2KZJbYf_k45xjeKqpUmRronY6MlPwo0,17078
+biolib/compute_node/remote_host_proxy.py,sha256=4pYib8lWOBHLVxTQEnbXOjLlWtHoL82gerSQaBV_wUo,19219
 biolib/compute_node/socker_listener_thread.py,sha256=T5_UikA3MB9bD5W_dckYLPTgixh72vKUlgbBvj9dbM0,1601
 biolib/compute_node/socket_sender_thread.py,sha256=YgamPHeUm2GjMFGx8qk-99WlZhEs-kAb3q_2O6qByig,971
-biolib/compute_node/utils.py,sha256=fWtFIcGatek1NaVOT9Vaey6UFp8GKLYGLAVu8jgOwi8,4861
+biolib/compute_node/utils.py,sha256=fvdbetPKMdfHkPqNZRw6eln_i13myu-n8tuceTUcfPU,4913
 biolib/compute_node/webserver/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+biolib/compute_node/webserver/compute_node_results_proxy.py,sha256=6gZ-jYZAuK0m4uiUkaSmP7n61ywPoQyCv3DzNOy-gQ0,7980
 biolib/compute_node/webserver/gunicorn_flask_application.py,sha256=jPfR_YvNBekLUXWo_vHFV-FIwlb8s8tacKmGHvh93qc,914
-biolib/compute_node/webserver/webserver.py,sha256=o4kOAStsqThUtKlnRE-U5TP0JIYntuySDjU7PH310xg,6620
+biolib/compute_node/webserver/proxy_utils.py,sha256=JNt1oqPuR5n63E5NC1l8AZN51NLuMw4lqVkocZnq72o,1164
+biolib/compute_node/webserver/webserver.py,sha256=8SUGXJ0tGuUIQ3HKdac-CFFQwDVpKR6JwEINChBt-Qg,9067
 biolib/compute_node/webserver/webserver_types.py,sha256=2t8EaFKESnves3BA_NBdnS2yAdo1qwamCFHiSt888nE,380
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
 biolib/compute_node/webserver/worker_thread.py,sha256=7uD9yQPhePYvP2HCJ27EeZ_h6psfIWFgqm1RHZxzobs,12483
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/experiments/experiment.py,sha256=gY1-d7FgVrcQO3YzOJ0mHS6j7z7rl5XzXEuk7dFi1gU,10460
+biolib/experiments/experiment.py,sha256=DZTlHXV4yfkE8wy2ScsE-xEcTf8vSeZFDq8oIVI1jYA,13853
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
-biolib/jobs/job.py,sha256=B9v-dq9li0v9gDfmyyZOnCk-kN0vYPYxoybHWQsCkPg,27403
-biolib/jobs/job_result.py,sha256=L__GA5dNSDFHoQpAG2xb-tNqp_p4fQl53bAmlcvAt6M,6074
-biolib/jobs/types.py,sha256=ezvaoTANsWazK6PmfpYcqezdfjP7MNBEBfqIZGoZhz8,997
+biolib/jobs/job.py,sha256=3rP__a_UJWdUzOngtmYekzTV1ttKugB1EyXP7SIN37A,31845
+biolib/jobs/job_result.py,sha256=pbCk2raBK9rbi2RlgQM7MmBqi9K52X4D9n8_1qXjLGU,7636
+biolib/jobs/types.py,sha256=rFs6bQWsNI-nb1Hu9QzOW2zFZ8bOVt7ax4UpGVASxVA,1034
 biolib/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/runtime/__init__.py,sha256=MlRepA11n2H-3plB5rzWyyHK2JmP6PiaP3i6x3vt0mg,506
-biolib/sdk/__init__.py,sha256=Z1S5BgpvM87S2o1libtqkYN1CfYUhn_d4ChEJjwdFKM,2356
+biolib/sdk/__init__.py,sha256=Px4wx4Ynq_rQ7A3OzlZnOC9NiGs5jN9IzpKTg3N_GBY,2590
 biolib/tables.py,sha256=MmruV-nJLc3HbLVJBAiDuDCgS2-4oaUkpoCLLUNYbxQ,1173
-biolib/typing_utils.py,sha256=ntzrlyTkUaO2OtccLYzCAGztGdca0WT5fikJUmSkT-Y,148
+biolib/typing_utils.py,sha256=TMw723SPq8zy1VYsdgbq_LPsGtCm3VgFhzz6srt71u0,146
 biolib/user/__init__.py,sha256=Db5wtxLfFz3ID9TULSSTo77csw9tO6RtxMRvV5cqKEE,39
 biolib/user/sign_in.py,sha256=e_JnykVxemq8eUBD5GmthjDV504CT1Dmn0EshrDCGB8,2085
 biolib/utils/__init__.py,sha256=VtuTFu8zWZwJzfYhVEpPdlhvTA2JkHCboqqQA-VNkpA,5790
-biolib/utils/app_uri.py,sha256=Yq_-_VGugQhMMo6mM5f0G9yNlLkr0WK4j0Nrf3FE4xQ,2171
-biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3100
+biolib/utils/cache_state.py,sha256=GNFLTo2KcoP4ypDoVVCItmkIAuHtsa_41sSDaK5JFCo,3119
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
-biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
+biolib/utils/seq_util.py,sha256=rImaghQGuIqTVWks6b9P2yKuN34uePUYPUFW_Wyoa4A,6737
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.1056.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.1056.dist-info/METADATA,sha256=QPQ_pu8Hn5MYAMFVNF5DK_DSZvBOLsWpFPFGDOz64ZI,1571
-pybiolib-1.2.1056.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-pybiolib-1.2.1056.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.1056.dist-info/RECORD,,
+pybiolib-1.2.1642.dist-info/METADATA,sha256=wcifrjdK4MJ5EIZQYcDvUZogwhWZY0P0D8r0vG-0Acs,1644
+pybiolib-1.2.1642.dist-info/WHEEL,sha256=zp0Cn7JsFoX2ATtOhtaFYIiE2rmFAD4OcMhtUki8W3U,88
+pybiolib-1.2.1642.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.1642.dist-info/licenses/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.1642.dist-info/RECORD,,

{pybiolib-1.2.1056.dist-info → pybiolib-1.2.1642.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.1.3
+Generator: poetry-core 2.2.1
 Root-Is-Purelib: true
 Tag: py3-none-any

biolib/_internal/types/__init__.py

@@ -1,6 +0,0 @@
-from .app import *  # noqa: F403
-from .data_record import *  # noqa: F403
-from .experiment import *  # noqa: F403
-from .resource import *  # noqa: F403
-from .resource_permission import *  # noqa: F403
-from .resource_version import *  # noqa: F403

biolib/utils/app_uri.py

@@ -1,57 +0,0 @@
-import re
-
-from biolib.biolib_errors import BioLibError
-from biolib.typing_utils import TypedDict, Optional
-
-
-class SemanticVersion(TypedDict):
-    major: int
-    minor: int
-    patch: int
-
-
-class AppUriParsed(TypedDict):
-    account_handle_normalized: str
-    app_name_normalized: Optional[str]
-    app_name: Optional[str]
-    resource_name_prefix: Optional[str]
-    version: Optional[SemanticVersion]
-
-
-def normalize(string: str) -> str:
-    return string.replace('-', '_').lower()
-
-
-# Mainly copied from backend
-def parse_app_uri(uri: str, use_account_as_name_default: bool = True) -> AppUriParsed:
-    uri_regex = r'^(@(?P<resource_name_prefix>[\w._-]+)/)?(?P<account_handle>[\w-]+)(/(?P<app_name>[\w-]+))?' \
-                r'(:(?P<version>(?P<major>0|[1-9]\d*)\.(?P<minor>0|[1-9]\d*)\.(?P<patch>0|[1-9]\d*)))?$'
-
-    uri_without_trailing_asterisk_version = uri[:-2] if uri.endswith(':*') else uri
-    matches = re.search(uri_regex, uri_without_trailing_asterisk_version)
-    if matches is None:
-        raise BioLibError(f"Could not parse app uri '{uri}', uri did not match regex")
-
-    resource_name_prefix: Optional[str] = matches.group('resource_name_prefix')
-    account_handle_normalized: str = normalize(matches.group('account_handle'))
-    app_name: Optional[str] = matches.group('app_name')
-
-    # Default to account_handle if app_name is not supplied
-    if app_name:
-        app_name_normalized = normalize(app_name)
-    elif use_account_as_name_default:
-        app_name_normalized = account_handle_normalized
-    else:
-        app_name_normalized = None
-
-    return AppUriParsed(
-        resource_name_prefix=resource_name_prefix.lower() if resource_name_prefix is not None else 'biolib.com',
-        account_handle_normalized=account_handle_normalized,
-        app_name_normalized=app_name_normalized,
-        app_name=app_name if app_name is not None or not use_account_as_name_default else account_handle_normalized,
-        version=None if not matches.group('version') else SemanticVersion(
-            major=int(matches.group('major')),
-            minor=int(matches.group('minor')),
-            patch=int(matches.group('patch')),
-        )
-    )