pybiolib 1.2.1045__py3-none-any.whl → 1.2.1056__py3-none-any.whl

biolib/_internal/templates/copilot_template/.github/instructions/style-react-ts.instructions.md

@@ -1,13 +1,36 @@
 ---
-applyTo: "**/*.ts,**/*.tsx"
+applyTo: "**/*.ts,**/*.tsx,**/package.json,**/vite.config.*,**/.yarnrc.yml,**/yarn.lock,**/gui/**"
 ---
 
 Apply the [general coding guidelines](./style-general.instructions.md) to all code.
 
 # General Project Guidelines
-- Use yarn instead of npm whenever relevant.
 - Prefer using `export default function` over exporting at the end of the file.
 
+# Package Management
+- **Always use yarn instead of npm** for all package management operations
+- Use `yarn install` instead of `npm install`
+- Use `yarn add <package>` instead of `npm install <package>`
+- Use `yarn remove <package>` instead of `npm uninstall <package>`
+- Use `yarn dev` instead of `npm run dev`
+- Use `yarn build` instead of `npm run build`
+
+# Build Process
+- BioLib GUI projects use Vite for building and development
+- The build process compiles TypeScript and React into a single HTML file
+- Always run `yarn build` to create the production build before deployment
+- Use `yarn dev` for local development with hot reloading
+
+# Configuration Files
+- Respect the `.yarnrc.yml` configuration for yarn settings
+- The `package.json` should specify `"packageManager": "yarn@4.6.0"` or similar
+- Never modify yarn.lock manually - let yarn manage it automatically
+
+# Dependencies
+- Add new dependencies using `yarn add <package>` for runtime dependencies
+- Add development dependencies using `yarn add -D <package>`
+- Keep dependencies up to date but test thoroughly after updates
+
 # TypeScript Guidelines
 - Use TypeScript for all new code
 - Follow functional programming principles where possible

biolib/cli/init.py

@@ -10,8 +10,10 @@ from biolib import (
 )
 from biolib._internal.add_copilot_prompts import add_copilot_prompts
 from biolib._internal.add_gui_files import add_gui_files
+from biolib._internal.http_client import HttpError
 from biolib._internal.string_utils import normalize_for_docker_tag
 from biolib._internal.templates import templates
+from biolib.api import client as api_client
 from biolib.biolib_api_client.api_client import BiolibApiClient
 from biolib.biolib_api_client.biolib_app_api import BiolibAppApi
 from biolib.user.sign_in import sign_in
@@ -23,6 +25,24 @@ def init() -> None:
     cwd = os.getcwd()
 
     app_uri = input('What URI do you want to create the application under? (leave blank to skip): ')
+
+    if app_uri and not app_uri.startswith('@'):
+        try:
+            response = api_client.get('system/enterprise/config/', authenticate=False)
+            config = response.json()
+            prefix = config.get('resource_hostname_prefix')
+            if prefix:
+                app_uri = f'@{prefix}/{app_uri}'
+                print(f'Detected enterprise deployment, using URI: {app_uri}')
+        except HttpError as e:
+            # 404 indicates endpoint not found, 501 indicates non-enterprise deployment
+            if e.code in [404, 501]:
+                pass
+            else:
+                print(f'Warning: Could not detect enterprise configuration: {e}')
+        except Exception as e:
+            print(f'Warning: Could not detect enterprise configuration: {e}')
+
     app_name = app_uri.split('/')[-1] if app_uri else None
     docker_tag = normalize_for_docker_tag(app_name) if app_name else None
 

{pybiolib-1.2.1045.dist-info → pybiolib-1.2.1056.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.1045
+Version: 1.2.1056
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.1045.dist-info → pybiolib-1.2.1056.dist-info}/RECORD

@@ -23,7 +23,7 @@ biolib/_internal/templates/__init__.py,sha256=NVbhLUMC8HITzkLvP88Qu7FHaL-SvQord-
 biolib/_internal/templates/copilot_template/.github/instructions/general-app-knowledge.instructions.md,sha256=-j8v0GRtDhHoqP2wcGUykiwU7HQ0DmkCNxw_01oKMdY,546
 biolib/_internal/templates/copilot_template/.github/instructions/style-general.instructions.md,sha256=tl2Ve1ZPlPBrH6CSrjIkiMA8xnM2tQIJs1cerKCyAkU,761
 biolib/_internal/templates/copilot_template/.github/instructions/style-python.instructions.md,sha256=xfypuPqMsz5ejobDoVI0HjmNqksl16aFuIol1nAhpHg,1034
-biolib/_internal/templates/copilot_template/.github/instructions/style-react-ts.instructions.md,sha256=jrQDqeRxvX5mHZHY883tJT-Z0PHDAdbHqsjaC5I5XJU,964
+biolib/_internal/templates/copilot_template/.github/instructions/style-react-ts.instructions.md,sha256=P-heJDSgxqo67YLjFQZ-iIu9Vh0Wln4Jgl6_GzprVQI,2083
 biolib/_internal/templates/copilot_template/.github/prompts/biolib_app_inputs.prompt.md,sha256=SMzXZImdID0yKjhE1fG54VrHdD8IVuwRxRKsMF-KjWs,697
 biolib/_internal/templates/copilot_template/.github/prompts/biolib_onboard_repo.prompt.md,sha256=BfCkVyafDHFBMu6qcvKlxpnXKJRHNDp5qR_fN4XB9pI,1515
 biolib/_internal/templates/copilot_template/.github/prompts/biolib_run_apps.prompt.md,sha256=-t1bmGr3zEFa6lKHaLcI98yq4Sg1TCMW8xbelNSHaOA,696
@@ -98,7 +98,7 @@ biolib/cli/__init__.py,sha256=IHC2bEyA27pvgp-18SGfFVJOP456elanz7suDP8D084,1316
 biolib/cli/auth.py,sha256=p9ZGY6ld2rnMbpsuRskvIQJNUHlSgYgcLTDsYGyUwyw,1407
 biolib/cli/data_record.py,sha256=t8DfJK2EZ_SNZ9drDA_N5Jqy8DNwf9f5SlFrIaOvtv0,3501
 biolib/cli/download_container.py,sha256=HIZVHOPmslGE5M2Dsp9r2cCkAEJx__vcsDz5Wt5LRos,483
-biolib/cli/init.py,sha256=QyoOIQ47V8pF3erFwNoKn9h6h5gEc5Czv-RoyXEZ0L4,7487
+biolib/cli/init.py,sha256=oGo178h_GlDieWjBqHDLAejeUhVKm5ZJnI_o2YqbEZ0,8366
 biolib/cli/lfs.py,sha256=z2qHUwink85mv9yDgifbVKkVwuyknGhMDTfly_gLKJM,4151
 biolib/cli/push.py,sha256=J8BswMYVeTacZBHbm4K4a2XbS_I8kvfgRZLoby2wi3I,1695
 biolib/cli/run.py,sha256=RAAXbIx8Bi-4fNkEoz2ODJ0fEtyS7VxD3dkc2fVZwjY,2150
@@ -155,8 +155,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.2.1045.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.2.1045.dist-info/METADATA,sha256=3NX0mEPpOAVcCQ-A-4RCTB-dE19gytzLdprfrKLoEqs,1571
-pybiolib-1.2.1045.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-pybiolib-1.2.1045.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.2.1045.dist-info/RECORD,,
+pybiolib-1.2.1056.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.2.1056.dist-info/METADATA,sha256=QPQ_pu8Hn5MYAMFVNF5DK_DSZvBOLsWpFPFGDOz64ZI,1571
+pybiolib-1.2.1056.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
+pybiolib-1.2.1056.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.2.1056.dist-info/RECORD,,