pybiolib 1.2.1027__py3-none-any.whl → 1.2.1034__py3-none-any.whl

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Files changed (7) hide show
  1. biolib/biolib_api_client/app_types.py +6 -0
  2. biolib/compute_node/job_worker/job_worker.py +9 -0
  3. {pybiolib-1.2.1027.dist-info → pybiolib-1.2.1034.dist-info}/METADATA +1 -1
  4. {pybiolib-1.2.1027.dist-info → pybiolib-1.2.1034.dist-info}/RECORD +7 -7
  5. {pybiolib-1.2.1027.dist-info → pybiolib-1.2.1034.dist-info}/LICENSE +0 -0
  6. {pybiolib-1.2.1027.dist-info → pybiolib-1.2.1034.dist-info}/WHEEL +0 -0
  7. {pybiolib-1.2.1027.dist-info → pybiolib-1.2.1034.dist-info}/entry_points.txt +0 -0
biolib/biolib_api_client/app_types.py CHANGED
@@ -68,6 +68,11 @@ class LargeFileSystemMapping(TypedDict):
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  uuid: str
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+ class PortMapping(TypedDict):
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+ from_port: int
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+ to_port: int
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+
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+
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  class _Module(TypedDict):
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  command: str
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  environment: Literal['biolib-app', 'biolib-custom', 'biolib-ecr']
@@ -78,6 +83,7 @@ class _Module(TypedDict):
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  large_file_systems: List[LargeFileSystemMapping]
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  name: str
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  output_files_mappings: List[FilesMapping]
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+ port_mappings: List[PortMapping]
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  source_files_mappings: List[FilesMapping]
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  working_directory: str
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biolib/compute_node/job_worker/job_worker.py CHANGED
@@ -250,6 +250,15 @@ class JobWorker:
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  job = job_wrapper['job']
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  self._jobs[job['public_id']] = job
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+ app_version = job['app_version']
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+ modules = app_version.get('modules', [])
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+ for module in modules:
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+ module_port_mappings = module.get('port_mappings', [])
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+ if module_port_mappings:
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+ logger_no_user_data.debug(
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+ f"Job '{job['public_id']}' module '{module['name']}' has port_mappings: {module_port_mappings}"
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+ )
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+
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  if job['app_version'].get('modules') is not None and BiolibDockerClient.is_docker_running():
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  self._start_network_and_remote_host_proxies(job)
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{pybiolib-1.2.1027.dist-info → pybiolib-1.2.1034.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: pybiolib
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- Version: 1.2.1027
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+ Version: 1.2.1034
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  Summary: BioLib Python Client
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  License: MIT
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  Keywords: biolib
{pybiolib-1.2.1027.dist-info → pybiolib-1.2.1034.dist-info}/RECORD RENAMED
@@ -70,7 +70,7 @@ biolib/app/app.py,sha256=E4PuwMWiWujQQzHQcq7MfVEZV-q6uKAbwBLr0ZPY5Dk,11825
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  biolib/app/search_apps.py,sha256=K4a41f5XIWth2BWI7OffASgIsD0ko8elCax8YL2igaY,1470
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  biolib/biolib_api_client/__init__.py,sha256=E5EMa19wJoblwSdQPYrxc_BtIeRsAuO0L_jQweWw-Yk,182
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  biolib/biolib_api_client/api_client.py,sha256=IONzXeFCHl4wuct6fqOC_7NiTv_zFy6ys0hsAtvLzTA,7578
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- biolib/biolib_api_client/app_types.py,sha256=1sXz9XnLRKNALMglNdTbew7AL6OkcUan0MPdj4xQLis,2456
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+ biolib/biolib_api_client/app_types.py,sha256=TjKQyB1vTNHP-Wc3XIWYqOCnU2aZqndLQbLv3MUYVD8,2561
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  biolib/biolib_api_client/auth.py,sha256=kjm0ZHnH3I8so3su2sZbBxNHYp-ZUdrZ5lwQ0K36RSw,949
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  biolib/biolib_api_client/biolib_app_api.py,sha256=DdE_kRfDgVa876Cdl_D1P0lBoaghFomEyy-ZP8K7SoY,5177
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  biolib/biolib_api_client/biolib_job_api.py,sha256=3Hzv5Os4d377pKrCzg3i7c5xiy9FiqeVssub690GLdA,7423
@@ -121,7 +121,7 @@ biolib/compute_node/job_worker/executors/types.py,sha256=wbjWZZ2f9FttjqUCCOeZmn7
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  biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py,sha256=_cvEiZbOwfkv6fYmfrvdi_FVviIEYr_dSClQcOQaUWM,1198
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  biolib/compute_node/job_worker/job_max_runtime_timer_thread.py,sha256=K_xgz7IhiIjpLlXRk8sqaMyLoApcidJkgu29sJX0gb8,1174
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  biolib/compute_node/job_worker/job_storage.py,sha256=J6B5wkBo3cqmT1AV-qJnm2Lt9Qmcp3qn-1AabjO9m60,4686
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- biolib/compute_node/job_worker/job_worker.py,sha256=3m6_ZzsSbuygbh9UmQ2RQrPZgJVsjcSR5V57ddECcqo,29139
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+ biolib/compute_node/job_worker/job_worker.py,sha256=MpYRikixXBF6iZI0m5xW7vrJ-cdkpO_AQfElZaKoI_Q,29542
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  biolib/compute_node/job_worker/large_file_system.py,sha256=XXqRlVtYhs-Ji9zQGIk5KQPXFO_Q5jJH0nnlw4GkeMY,10461
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  biolib/compute_node/job_worker/mappings.py,sha256=Z48Kg4nbcOvsT2-9o3RRikBkqflgO4XeaWxTGz-CNvI,2499
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  biolib/compute_node/job_worker/utilization_reporter_thread.py,sha256=7tm5Yk9coqJ9VbEdnO86tSXI0iM0omwIyKENxdxiVXk,8575
@@ -155,8 +155,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
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  biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
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  biolib/utils/seq_util.py,sha256=Ozk0blGtPur_D9MwShD02r_mphyQmgZkx-lOHOwnlIM,6730
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  biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
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- pybiolib-1.2.1027.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
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- pybiolib-1.2.1027.dist-info/METADATA,sha256=rnFhXJeDvNO7tbY0f6PSMrkFttvZodvCOxPboSMVIY4,1571
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- pybiolib-1.2.1027.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- pybiolib-1.2.1027.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
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- pybiolib-1.2.1027.dist-info/RECORD,,
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+ pybiolib-1.2.1034.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
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+ pybiolib-1.2.1034.dist-info/METADATA,sha256=Tpeyy78ybvhKQbgVWr4DDnopl3ymCnDLvS4EmMmKrM4,1571
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+ pybiolib-1.2.1034.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ pybiolib-1.2.1034.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
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+ pybiolib-1.2.1034.dist-info/RECORD,,