pybiolib 1.1.2229__py3-none-any.whl → 1.1.2234__py3-none-any.whl

biolib/_internal/runtime.py

@@ -7,6 +7,7 @@ class RuntimeJobDataDict(TypedDict):
     job_uuid: str
     job_auth_token: str
     app_uri: str
+    is_environment_biolib_cloud: bool
 
 
 class BioLibRuntimeError(Exception):

biolib/_runtime/runtime.py

@@ -14,6 +14,10 @@ class Runtime:
     def check_is_environment_biolib_app() -> bool:
         return bool(Runtime._try_to_get_job_data())
 
+    @staticmethod
+    def check_is_environment_biolib_cloud() -> bool:
+        return Runtime._get_job_data()['is_environment_biolib_cloud']
+
     @staticmethod
     def get_job_id() -> str:
         return Runtime._get_job_data()['job_uuid']

biolib/compute_node/job_worker/executors/docker_executor.py

@@ -286,6 +286,7 @@ class DockerExecutor:
                 job_uuid=self._options['job']['public_id'],
                 job_auth_token=self._options['job']['auth_token'],
                 app_uri=self._options['job']['app_uri'],
+                is_environment_biolib_cloud=bool(utils.IS_RUNNING_IN_CLOUD),
             )
             secrets: Dict[str, str] = dict(
                 **module.get('secrets', {}),

biolib/compute_node/remote_host_proxy.py

@@ -1,3 +1,4 @@
+import base64
 import io
 import subprocess
 import tarfile
@@ -160,6 +161,9 @@ class RemoteHostProxy:
             access_token = BiolibApiClient.get().access_token
             bearer_token = f'Bearer {access_token}' if access_token else ''
 
+            biolib_index_basic_auth = f'compute_node|admin:{compute_node_auth_token},{self._job_uuid}'
+            biolib_index_basic_auth_base64 = base64.b64encode(biolib_index_basic_auth.encode('utf-8')).decode('utf-8')
+
             nginx_config = f"""
 events {{
   worker_connections  1024;
@@ -315,6 +319,13 @@ http {{
             proxy_ssl_server_name    on;
         }}
 
+        location /proxy/index/ {{
+            proxy_pass               https://$upstream_hostname$request_uri;
+            proxy_set_header         authorization "Basic {biolib_index_basic_auth_base64}";
+            proxy_set_header         cookie "";
+            proxy_ssl_server_name    on;
+        }}
+
         location / {{
             return 404 "Not found";
         }}

{pybiolib-1.1.2229.dist-info → pybiolib-1.1.2234.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2229
+Version: 1.1.2234
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2229.dist-info → pybiolib-1.1.2234.dist-info}/RECORD

@@ -15,7 +15,7 @@ biolib/_internal/lfs/cache.py,sha256=pQS2np21rdJ6I3DpoOutnzPHpLOZgUIS8TMltUJk_k4
 biolib/_internal/libs/__init__.py,sha256=Jdf4tNPqe_oIIf6zYml6TiqhL_02Vyqwge6IELrAFhw,98
 biolib/_internal/libs/fusepy/__init__.py,sha256=AWDzNFS-XV_5yKb0Qx7kggIhPzq1nj_BZS5y2Nso08k,41944
 biolib/_internal/push_application.py,sha256=b1WvlijJYOLp7f43AoAzjINKkALM9DVB8yfSetEP4Z4,10381
-biolib/_internal/runtime.py,sha256=9pZ3s3L7LGxdqOgnHh1KK3Jjyn_9MjhQmKHI-6hMT3U,448
+biolib/_internal/runtime.py,sha256=BiHl4klUHr36MCpqKaUso4idHeBZfPAahLYRQrabFqA,486
 biolib/_internal/types/__init__.py,sha256=11ZucS8jKeLGAAswXyKI7FH2KLHd6T9Sh8ZK2Ar3jlk,152
 biolib/_internal/types/app.py,sha256=Mz2QGD_jESX-K9JYnLWPo4YA__Q_1FQQTk9pvidCohU,118
 biolib/_internal/types/data_record.py,sha256=AHoIiwVqeHj0HozQxFRAyxk-d3XJgLWno4ic1z9eTrQ,865
@@ -23,7 +23,7 @@ biolib/_internal/types/experiment.py,sha256=D94iBdn2nS92lRW-TOs1a2WKXJD5ZtmzL4yp
 biolib/_internal/types/resource.py,sha256=G-vPkZoe4Um6FPxsQZtRzAlbSW5sDW4NFkbjn21I3V4,372
 biolib/_internal/types/typing.py,sha256=D4EKKEe7kDx0K6lJi-H_XLtk-8w6nu2fdqn9bvzI-Xo,288
 biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd3As7c,630
-biolib/_runtime/runtime.py,sha256=daYxzIpRoW4k-HJFu2BMXeylYSlCXn3-SqdSriCFnKw,2770
+biolib/_runtime/runtime.py,sha256=6eqxOCvnOz3ificmS3wJ05M5xfPwerCEg5ib_gED-kA,2912
 biolib/api/__init__.py,sha256=mQ4u8FijqyLzjYMezMUUbbBGNB3iFmkNdjXnWPZ7Jlw,138
 biolib/api/client.py,sha256=FRpdH5aI187b_I_4HUNi680v4iOP65z5f2RcUo8D8MA,3559
 biolib/app/__init__.py,sha256=cdPtcfb_U-bxb9iSL4fCEq2rpD9OjkyY4W-Zw60B0LI,37
@@ -74,7 +74,7 @@ biolib/compute_node/job_worker/cache_state.py,sha256=MwjSRzcJJ_4jybqvBL4xdgnDYSI
 biolib/compute_node/job_worker/cache_types.py,sha256=ajpLy8i09QeQS9dEqTn3T6NVNMY_YsHQkSD5nvIHccQ,818
 biolib/compute_node/job_worker/docker_image_cache.py,sha256=ansHIkJIq_EMW1nZNlW-RRLVVeKWTbzNICYaOHpKiRE,7460
 biolib/compute_node/job_worker/executors/__init__.py,sha256=bW6t1qi3PZTlHM4quaTLa8EI4ALTCk83cqcVJfJfJfE,145
-biolib/compute_node/job_worker/executors/docker_executor.py,sha256=2H7GooL0oAifPcbie0unatB4fRoHyqbsr6S91uagc_g,27952
+biolib/compute_node/job_worker/executors/docker_executor.py,sha256=LcYc4x4-vkmRM1FN1SNj7xRj4qZUNVjQWtgbYMFg3JU,28029
 biolib/compute_node/job_worker/executors/docker_types.py,sha256=VhsU1DKtJjx_BbCkVmiPZPH4ROiL1ygW1Y_s1Kbpa2o,216
 biolib/compute_node/job_worker/executors/tars/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/compute_node/job_worker/executors/types.py,sha256=yP5gG39hr-DLnw9bOE--VHi-1arDbIYiGuV1rlTbbHI,1466
@@ -86,7 +86,7 @@ biolib/compute_node/job_worker/large_file_system.py,sha256=XXqRlVtYhs-Ji9zQGIk5K
 biolib/compute_node/job_worker/mappings.py,sha256=Z48Kg4nbcOvsT2-9o3RRikBkqflgO4XeaWxTGz-CNvI,2499
 biolib/compute_node/job_worker/utilization_reporter_thread.py,sha256=7tm5Yk9coqJ9VbEdnO86tSXI0iM0omwIyKENxdxiVXk,8575
 biolib/compute_node/job_worker/utils.py,sha256=wgxcIA8yAhUPdCwyvuuJ0JmreyWmmUoBO33vWtG60xg,1282
-biolib/compute_node/remote_host_proxy.py,sha256=V85f4BFGGIS9mPA6W4HLxP8QHPg3MIzKm-awouYy4oo,14671
+biolib/compute_node/remote_host_proxy.py,sha256=ibkWqvLJJHwOM7GzYqJV613QPacU5392vjnDK8BNJIU,15213
 biolib/compute_node/socker_listener_thread.py,sha256=T5_UikA3MB9bD5W_dckYLPTgixh72vKUlgbBvj9dbM0,1601
 biolib/compute_node/socket_sender_thread.py,sha256=YgamPHeUm2GjMFGx8qk-99WlZhEs-kAb3q_2O6qByig,971
 biolib/compute_node/utils.py,sha256=M7i_WTyxbFM3Lri9RWZ_8FeQNYrQIWpKGLfp2I55oeY,4677
@@ -116,8 +116,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=ZQFcaE37B2dtucN2zDjOmdya_X0ITc1zBFZJNQY13XA,5183
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.2229.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.2229.dist-info/METADATA,sha256=1RPPo5D5nB3vkThTXRHq-swafKDQXT4E8ZWJh1-DUys,1508
-pybiolib-1.1.2229.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.2229.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.2229.dist-info/RECORD,,
+pybiolib-1.1.2234.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.2234.dist-info/METADATA,sha256=HbKXt5e16DZfNc3y5bAeoEbBg4BgcZkA6ovzvr0WQPM,1508
+pybiolib-1.1.2234.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.2234.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.2234.dist-info/RECORD,,