pybiolib 1.1.2226__py3-none-any.whl → 1.1.2232__py3-none-any.whl

biolib/compute_node/remote_host_proxy.py

@@ -1,3 +1,4 @@
+import base64
 import io
 import subprocess
 import tarfile
@@ -160,6 +161,9 @@ class RemoteHostProxy:
             access_token = BiolibApiClient.get().access_token
             bearer_token = f'Bearer {access_token}' if access_token else ''
 
+            biolib_index_basic_auth = f'compute_node|admin:{compute_node_auth_token},{self._job_uuid}'
+            biolib_index_basic_auth_base64 = base64.b64encode(biolib_index_basic_auth.encode('utf-8')).decode('utf-8')
+
             nginx_config = f"""
 events {{
   worker_connections  1024;
@@ -315,6 +319,13 @@ http {{
             proxy_ssl_server_name    on;
         }}
 
+        location /proxy/index/ {{
+            proxy_pass               https://$upstream_hostname$request_uri;
+            proxy_set_header         authorization "Basic {biolib_index_basic_auth_base64}";
+            proxy_set_header         cookie "";
+            proxy_ssl_server_name    on;
+        }}
+
         location / {{
             return 404 "Not found";
         }}

biolib/compute_node/webserver/worker_thread.py

@@ -221,8 +221,8 @@ class WorkerThread(threading.Thread):
         if self._connection:
             self._connection.close()
 
-        if not utils.IS_RUNNING_IN_CLOUD and self.compute_state['progress'] == 95:
-            seconds_to_sleep = 60  # 1 minute
+        if self.compute_state['progress'] == 95:
+            seconds_to_sleep = 5
             logger_no_user_data.debug(
                 f'Job "{self._job_uuid}" worker thread sleeping for {seconds_to_sleep} seconds before cleaning up'
             )
@@ -231,7 +231,7 @@ class WorkerThread(threading.Thread):
 
         compute_state_dict = webserver_utils.JOB_ID_TO_COMPUTE_STATE_DICT
         if self._job_uuid in compute_state_dict:
-            # Delete result as user has not started download within 60 seconds
+            # Delete result as user has not started download
             if compute_state_dict[self._job_uuid]['progress'] == 95 and os.path.exists(self._job_temporary_dir):
                 shutil.rmtree(self._job_temporary_dir)
 

{pybiolib-1.1.2226.dist-info → pybiolib-1.1.2232.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2226
+Version: 1.1.2232
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2226.dist-info → pybiolib-1.1.2232.dist-info}/RECORD

@@ -86,7 +86,7 @@ biolib/compute_node/job_worker/large_file_system.py,sha256=XXqRlVtYhs-Ji9zQGIk5K
 biolib/compute_node/job_worker/mappings.py,sha256=Z48Kg4nbcOvsT2-9o3RRikBkqflgO4XeaWxTGz-CNvI,2499
 biolib/compute_node/job_worker/utilization_reporter_thread.py,sha256=7tm5Yk9coqJ9VbEdnO86tSXI0iM0omwIyKENxdxiVXk,8575
 biolib/compute_node/job_worker/utils.py,sha256=wgxcIA8yAhUPdCwyvuuJ0JmreyWmmUoBO33vWtG60xg,1282
-biolib/compute_node/remote_host_proxy.py,sha256=V85f4BFGGIS9mPA6W4HLxP8QHPg3MIzKm-awouYy4oo,14671
+biolib/compute_node/remote_host_proxy.py,sha256=ibkWqvLJJHwOM7GzYqJV613QPacU5392vjnDK8BNJIU,15213
 biolib/compute_node/socker_listener_thread.py,sha256=T5_UikA3MB9bD5W_dckYLPTgixh72vKUlgbBvj9dbM0,1601
 biolib/compute_node/socket_sender_thread.py,sha256=YgamPHeUm2GjMFGx8qk-99WlZhEs-kAb3q_2O6qByig,971
 biolib/compute_node/utils.py,sha256=M7i_WTyxbFM3Lri9RWZ_8FeQNYrQIWpKGLfp2I55oeY,4677
@@ -95,7 +95,7 @@ biolib/compute_node/webserver/gunicorn_flask_application.py,sha256=jPfR_YvNBekLU
 biolib/compute_node/webserver/webserver.py,sha256=15PkRyhtdtSgFDxa0z78aPO4ciZURsFqJYi-HtUmZF8,6494
 biolib/compute_node/webserver/webserver_types.py,sha256=2t8EaFKESnves3BA_NBdnS2yAdo1qwamCFHiSt888nE,380
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
-biolib/compute_node/webserver/worker_thread.py,sha256=AfzSK6ZXXHB1QufemIEmCbVjvLPcOieNJK4xJRRM7B0,11871
+biolib/compute_node/webserver/worker_thread.py,sha256=GRRBUqXdMKvbjyLQhYlqGIbFKeU2iiEXIe5IXi9wgdg,11806
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/experiments/experiment.py,sha256=jIRixmQm3Gq9YdJ3I0-rE1vFukXqq6U4zXehFOJ1yZk,7614
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
@@ -116,8 +116,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=ZQFcaE37B2dtucN2zDjOmdya_X0ITc1zBFZJNQY13XA,5183
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.2226.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.2226.dist-info/METADATA,sha256=nBY9sWaEZd14c9PTpMTzy8O2WzG7uCJC9uNuzzSC4ws,1508
-pybiolib-1.1.2226.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.2226.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.2226.dist-info/RECORD,,
+pybiolib-1.1.2232.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.2232.dist-info/METADATA,sha256=sHw31HLhvgjJu0CXym6DHC1Q2QeQnTOB5GCZTLD8P3Y,1508
+pybiolib-1.1.2232.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.2232.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.2232.dist-info/RECORD,,