pybiolib 1.1.2216__py3-none-any.whl → 1.1.2224__py3-none-any.whl

biolib/_internal/http_client.py

@@ -125,12 +125,14 @@ class HttpClient:
 
             except urllib.error.URLError as error:
                 if isinstance(error.reason, socket.timeout):
-                    logger_no_user_data.warning(f'HTTP {method} request failed with read timeout for "{url}"')
+                    if retry_count > 0:
+                        logger_no_user_data.warning(f'HTTP {method} request failed with read timeout for "{url}"')
                     last_error = error
                 else:
                     raise error
             except socket.timeout as error:
-                logger_no_user_data.warning(f'HTTP {method} request failed with read timeout for "{url}"')
+                if retry_count > 0:
+                    logger_no_user_data.warning(f'HTTP {method} request failed with read timeout for "{url}"')
                 last_error = error
 
         raise last_error or Exception(f'HTTP {method} request failed after {retries} retries for "{url}"')

biolib/compute_node/webserver/worker_thread.py

@@ -242,10 +242,9 @@ class WorkerThread(threading.Thread):
                 f'Job "{self._job_uuid}" could not be found, maybe it has already been cleaned up'
             )
 
-        logger_no_user_data.debug(f'Job "{self._job_uuid}" worker thread terminated')
-
         if utils.IS_RUNNING_IN_CLOUD:
             config = CloudUtils.get_webserver_config()
+            logger_no_user_data.debug(f'Job "{self._job_uuid}" reporting CloudJob "{cloud_job_uuid}" as cleaned up...')
             api.client.post(
                 path=f'/internal/compute-nodes/cloud-jobs/{cloud_job_uuid}/cleaned-up/',
                 headers={'Compute-Node-Auth-Token': config['compute_node_info']['auth_token']},
@@ -256,4 +255,5 @@ class WorkerThread(threading.Thread):
             else:
                 webserver_utils.update_auto_shutdown_time()
 
+        logger_no_user_data.debug(f'Job "{self._job_uuid}" worker thread exiting...')
         sys.exit()

{pybiolib-1.1.2216.dist-info → pybiolib-1.1.2224.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2216
+Version: 1.1.2224
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2216.dist-info → pybiolib-1.1.2224.dist-info}/RECORD

@@ -9,7 +9,7 @@ biolib/_internal/data_record/remote_storage_endpoint.py,sha256=eCptuZ4DMAPnaNCVD
 biolib/_internal/file_utils.py,sha256=4jT6j7bB21c0JNn5BfnyWQib_zt0CVtJ_TiOFOStRcE,2604
 biolib/_internal/fuse_mount/__init__.py,sha256=B_tM6RM2dBw-vbpoHJC4X3tOAaN1H2RDvqYJOw3xFwg,55
 biolib/_internal/fuse_mount/experiment_fuse_mount.py,sha256=08aUdEq_bvqLBft_gSLjOClKDy5sBnMts1RfJf7AP_U,7012
-biolib/_internal/http_client.py,sha256=DdooXei93JKGYGV4aQmzue_oFzvHkozg2UCxgk9dfDM,5081
+biolib/_internal/http_client.py,sha256=Q7z7_DMI1EaVJSyevrra63piuee-NfqcAHRtQt76ZdA,5165
 biolib/_internal/lfs/__init__.py,sha256=gSWo_xg61UniYgD7yNYxeT4I9uaXBCBSi3_nmZjnPpE,35
 biolib/_internal/lfs/cache.py,sha256=pQS2np21rdJ6I3DpoOutnzPHpLOZgUIS8TMltUJk_k4,2226
 biolib/_internal/libs/__init__.py,sha256=Jdf4tNPqe_oIIf6zYml6TiqhL_02Vyqwge6IELrAFhw,98
@@ -95,7 +95,7 @@ biolib/compute_node/webserver/gunicorn_flask_application.py,sha256=jPfR_YvNBekLU
 biolib/compute_node/webserver/webserver.py,sha256=15PkRyhtdtSgFDxa0z78aPO4ciZURsFqJYi-HtUmZF8,6494
 biolib/compute_node/webserver/webserver_types.py,sha256=2t8EaFKESnves3BA_NBdnS2yAdo1qwamCFHiSt888nE,380
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
-biolib/compute_node/webserver/worker_thread.py,sha256=eiO0bCvZQmwtxNNHAKpPEsu2RjEj_mFtKUNSdn9A5w8,11752
+biolib/compute_node/webserver/worker_thread.py,sha256=AfzSK6ZXXHB1QufemIEmCbVjvLPcOieNJK4xJRRM7B0,11871
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/experiments/experiment.py,sha256=jIRixmQm3Gq9YdJ3I0-rE1vFukXqq6U4zXehFOJ1yZk,7614
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
@@ -116,8 +116,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=ZQFcaE37B2dtucN2zDjOmdya_X0ITc1zBFZJNQY13XA,5183
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.2216.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.2216.dist-info/METADATA,sha256=rhOI-qt9AJSFaI9A5NOpSTl67qRDp-3eX0P7BkG-iQw,1508
-pybiolib-1.1.2216.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.2216.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.2216.dist-info/RECORD,,
+pybiolib-1.1.2224.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.2224.dist-info/METADATA,sha256=dmjOi3vb0Yn0P8VzRgRTUxosMY3NfIrb3zs8lYCEH9k,1508
+pybiolib-1.1.2224.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.2224.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.2224.dist-info/RECORD,,