pybiolib 1.1.2204__py3-none-any.whl → 1.1.2208__py3-none-any.whl

biolib/compute_node/job_worker/job_storage.py

@@ -47,8 +47,21 @@ class JobStorage:
         module_output_path = os.path.join(job_temporary_dir, JobStorage.module_output_file_name)
         module_output_size = os.path.getsize(module_output_path)
 
+        # Calculate chunk size based on max chunk count of 10_000, using 9_000 to be on the safe side
+        max_chunk_count = 9_000
+        min_chunk_size_bytes = 50_000_000
+        chunk_size_in_bytes = max(min_chunk_size_bytes, module_output_size // max_chunk_count)
+
+        logger_no_user_data.debug(
+            f'Job "{job_uuid}" uploading result of size {module_output_size} bytes '
+            f'with chunk size of {chunk_size_in_bytes} bytes...'
+        )
+
         with open(module_output_path, mode='rb') as module_output_file:
-            module_output_iterator = get_chunk_iterator_from_file_object(module_output_file)
+            module_output_iterator = get_chunk_iterator_from_file_object(
+                file_object=module_output_file,
+                chunk_size_in_bytes=chunk_size_in_bytes,
+            )
             multipart_uploader = JobStorage._get_module_output_uploader(job_uuid)
             multipart_uploader.upload(
                 payload_iterator=module_output_iterator,

{pybiolib-1.1.2204.dist-info → pybiolib-1.1.2208.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2204
+Version: 1.1.2208
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2204.dist-info → pybiolib-1.1.2208.dist-info}/RECORD

@@ -80,7 +80,7 @@ biolib/compute_node/job_worker/executors/tars/__init__.py,sha256=47DEQpj8HBSa-_T
 biolib/compute_node/job_worker/executors/types.py,sha256=yP5gG39hr-DLnw9bOE--VHi-1arDbIYiGuV1rlTbbHI,1466
 biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py,sha256=_cvEiZbOwfkv6fYmfrvdi_FVviIEYr_dSClQcOQaUWM,1198
 biolib/compute_node/job_worker/job_max_runtime_timer_thread.py,sha256=K_xgz7IhiIjpLlXRk8sqaMyLoApcidJkgu29sJX0gb8,1174
-biolib/compute_node/job_worker/job_storage.py,sha256=LNkklckDLbYgCHsK5FGrEK75Kw-H4f4JcTCAtuE9His,4035
+biolib/compute_node/job_worker/job_storage.py,sha256=lScHI3ubcHKagSEW243tgbIWXUfbWDHDjEOPMvXxJE8,4603
 biolib/compute_node/job_worker/job_worker.py,sha256=fuWoYJo9HOqLmWl8yeCXh0mhT4ebbkrWac-BVb58khs,28842
 biolib/compute_node/job_worker/large_file_system.py,sha256=XXqRlVtYhs-Ji9zQGIk5KQPXFO_Q5jJH0nnlw4GkeMY,10461
 biolib/compute_node/job_worker/mappings.py,sha256=Z48Kg4nbcOvsT2-9o3RRikBkqflgO4XeaWxTGz-CNvI,2499
@@ -116,8 +116,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=ZQFcaE37B2dtucN2zDjOmdya_X0ITc1zBFZJNQY13XA,5183
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.2204.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.2204.dist-info/METADATA,sha256=AUNMGDThmOlRpc4CtVcR5lkUqfZXoPVsPauQ4czzWFc,1508
-pybiolib-1.1.2204.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.2204.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.2204.dist-info/RECORD,,
+pybiolib-1.1.2208.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.2208.dist-info/METADATA,sha256=2yI-Ekgvu56nB9gdvkhAlulW1Ww7eh3fgQU8CPaIyJU,1508
+pybiolib-1.1.2208.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.2208.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.2208.dist-info/RECORD,,