pybiolib 1.1.2138__py3-none-any.whl → 1.1.2145__py3-none-any.whl

biolib/_data_record/data_record.py

@@ -1,4 +1,12 @@
+import os
+from collections import namedtuple
+from datetime import datetime
+from fnmatch import fnmatch
+from struct import Struct
+from typing import Callable, Dict, List, Union, cast
+
 from biolib import api
+from biolib._internal import types
 from biolib._internal.data_record import get_data_record_state_from_uri, push_data_record_version
 from biolib._internal.data_record.remote_storage_endpoint import DataRecordRemoteStorageEndpoint
 from biolib._internal.http_client import HttpClient
@@ -12,14 +20,6 @@ from biolib.typing_utils import Optional as _Optional
 from biolib.utils.app_uri import parse_app_uri
 from biolib.utils.zip.remote_zip import RemoteZip
 
-
-import os
-from collections import namedtuple
-from datetime import datetime
-from fnmatch import fnmatch
-from struct import Struct
-from typing import Callable, Dict, List, cast, Union
-
 PathFilter = Union[str, Callable[[str], bool]]
 
 
@@ -34,6 +34,10 @@ class DataRecord:
     def uri(self) -> str:
         return self._state['resource_uri']
 
+    @property
+    def uuid(self) -> str:
+        return self._state['resource_uuid']
+
     @property
     def name(self) -> str:
         uri_parsed = parse_app_uri(self._state['resource_uri'], use_account_as_name_default=False)
@@ -206,3 +210,6 @@ class DataRecord:
             return fnmatch(file.path, glob_filter)
 
         return list(filter(_filter_function, files))
+
+    def _get_detailed_dict(self) -> types.DataRecordDetailedDict:
+        return cast(types.DataRecordDetailedDict, api_client.get(f'/resources/data-records/{self.uuid}/').json())

biolib/biolib_api_client/api_client.py

@@ -192,9 +192,16 @@ class BiolibApiClient:
         api_client.refresh_access_token()
 
     @staticmethod
-    def assert_is_signed_in(authenticated_action_description: str) -> None:
+    def is_reauthentication_needed() -> bool:
         api_client = BiolibApiClient.get()
         if not api_client.is_signed_in and not Runtime.check_is_environment_biolib_app():
+            return True
+        else:
+            return False
+
+    @staticmethod
+    def assert_is_signed_in(authenticated_action_description: str) -> None:
+        if BiolibApiClient.is_reauthentication_needed():
             raise BioLibError(
                 f'You must be signed in to {authenticated_action_description}. '
                 f'Please set the environment variable "BIOLIB_TOKEN"'

biolib/user/sign_in.py

@@ -14,11 +14,11 @@ def sign_out() -> None:
 
 
 def sign_in(open_in_default_browser: bool = False) -> None:
-    api_client = BiolibApiClient.get()
-    if api_client.is_signed_in:
+    if not BiolibApiClient.is_reauthentication_needed():
         logger_no_user_data.info('Already signed in')
         return
 
+    api_client = BiolibApiClient.get()
     auth_challenge = BiolibAuthChallengeApi.create_auth_challenge()
     auth_challenge_token = auth_challenge['token']
 

{pybiolib-1.1.2138.dist-info → pybiolib-1.1.2145.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2138
+Version: 1.1.2145
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2138.dist-info → pybiolib-1.1.2145.dist-info}/RECORD

@@ -1,7 +1,7 @@
 LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
 README.md,sha256=_IH7pxFiqy2bIAmaVeA-iVTyUwWRjMIlfgtUbYTtmls,368
 biolib/__init__.py,sha256=_tThyzISH81yS9KXP_X3qEiKXmsIp5XOBcJIODfLVnc,4338
-biolib/_data_record/data_record.py,sha256=jUeCQjnVQLNLmlXO3rREEUnjXjOYuaQjBO7R66P6wFU,8909
+biolib/_data_record/data_record.py,sha256=KTHrVy_wj6FU3ckD0_EsakyNJcniLIdT9c3ugujNRoI,9210
 biolib/_internal/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/_internal/data_record/__init__.py,sha256=0T0CV6PfKc8itjMu-48sCJjcZQEzXl1ZLBqG_LjJTqQ,82
 biolib/_internal/data_record/data_record.py,sha256=D0BaC8WhnkM564eKUI69hVHUkKY1In0cyfpjxYyWk18,3363
@@ -30,7 +30,7 @@ biolib/app/__init__.py,sha256=cdPtcfb_U-bxb9iSL4fCEq2rpD9OjkyY4W-Zw60B0LI,37
 biolib/app/app.py,sha256=P2RwaDAskUHzlciuTJUroqUocRwoyOLT6YbgMyCRRDI,8484
 biolib/app/search_apps.py,sha256=K4a41f5XIWth2BWI7OffASgIsD0ko8elCax8YL2igaY,1470
 biolib/biolib_api_client/__init__.py,sha256=E5EMa19wJoblwSdQPYrxc_BtIeRsAuO0L_jQweWw-Yk,182
-biolib/biolib_api_client/api_client.py,sha256=krlSRmmAwtdMMyN1XzQhh1gihB1ERSIVslWQ-dqI1yU,7188
+biolib/biolib_api_client/api_client.py,sha256=ciNx4ybpyKG5LEf4KQdGEz13r0jTxImyQat4_HDecD0,7373
 biolib/biolib_api_client/app_types.py,sha256=FxSr4UqfnMhLe34p8bm02wsC3g1Jz8iaing5tRKDOQI,2442
 biolib/biolib_api_client/auth.py,sha256=kjm0ZHnH3I8so3su2sZbBxNHYp-ZUdrZ5lwQ0K36RSw,949
 biolib/biolib_api_client/biolib_app_api.py,sha256=DndlVxrNTes6DOaWyMINLGZQCRMWVvR7gwt5HVlyf5Y,4240
@@ -109,15 +109,15 @@ biolib/templates/__init__.py,sha256=Yx62sSyDCDesRQDQgmbDsLpfgEh93fWE8r9u4g2azXk,
 biolib/templates/example_app.py,sha256=EB3E3RT4SeO_ii5nVQqJpi5KDGNE_huF1ub-e5ZFveE,715
 biolib/typing_utils.py,sha256=ntzrlyTkUaO2OtccLYzCAGztGdca0WT5fikJUmSkT-Y,148
 biolib/user/__init__.py,sha256=Db5wtxLfFz3ID9TULSSTo77csw9tO6RtxMRvV5cqKEE,39
-biolib/user/sign_in.py,sha256=q-E2B3wLVwPU5plbITJXP4GDWWUzUcDpYu_y8BShNQ8,2039
+biolib/user/sign_in.py,sha256=XTAmRPKfmg7VAaB8cT5wcmfxoPXeHqY8LmDiADF7zbw,2064
 biolib/utils/__init__.py,sha256=fwjciJyJicvYyZcVTzfDBgD0SKY13DeXqvTeG4qZIy8,5548
 biolib/utils/app_uri.py,sha256=Yq_-_VGugQhMMo6mM5f0G9yNlLkr0WK4j0Nrf3FE4xQ,2171
 biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3100
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.2138.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.2138.dist-info/METADATA,sha256=kchNYjho0XuOe-z7E79uzYosSujZ-2wPJZfNEMsKAY0,1508
-pybiolib-1.1.2138.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.2138.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.2138.dist-info/RECORD,,
+pybiolib-1.1.2145.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.2145.dist-info/METADATA,sha256=rpVBXD5_Q8O8-SBz_G9jwhvCWRz_ww1DsPc0eApjBMc,1508
+pybiolib-1.1.2145.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.2145.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.2145.dist-info/RECORD,,