pybiolib 1.1.2023__py3-none-any.whl → 1.1.2031__py3-none-any.whl

biolib/_internal/data_record/data_record.py

@@ -22,11 +22,6 @@ PathFilter = Union[str, Callable[[str], bool]]
 class DataRecord:
     def __init__(self, uri: str):
         self._uri = uri
-        uri_parsed = parse_app_uri(uri, use_account_as_name_default=False)
-        if not uri_parsed['app_name']:
-            raise ValueError('Expected parameter "uri" to contain resource name')
-
-        self._name = uri_parsed['app_name']
 
     def __repr__(self):
         return f'DataRecord: {self._uri}'
@@ -37,7 +32,11 @@ class DataRecord:
 
     @property
     def name(self) -> str:
-        return self._name
+        uri_parsed = parse_app_uri(self.uri, use_account_as_name_default=False)
+        if not uri_parsed['app_name']:
+            raise ValueError('Expected parameter "uri" to contain resource name')
+
+        return uri_parsed['app_name']
 
     def list_files(self, path_filter: Optional[PathFilter] = None) -> List[LazyLoadedFile]:
         app_response: AppGetResponse = api_client.get(path='/app/', params={'uri': self._uri}).json()
@@ -76,6 +75,10 @@ class DataRecord:
     def save_files(self, output_dir: str, path_filter: Optional[PathFilter] = None) -> None:
         self.download_files(output_dir=output_dir, path_filter=path_filter)
 
+    def update(self, data_path: str) -> None:
+        assert os.path.isdir(data_path), f'The path "{data_path}" is not a directory.'
+        self._uri = lfs.push_large_file_system(lfs_uri=self._uri, input_dir=data_path)
+
     @staticmethod
     def create(destination: str, data_path: str, name: Optional[str] = None) -> 'DataRecord':
         assert os.path.isdir(data_path), f'The path "{data_path}" is not a directory.'

biolib/api/__init__.py

@@ -1,4 +1,5 @@
 from biolib._internal.http_client import HttpClient
+
 from .client import ApiClient as _ApiClient
 
 _client = _ApiClient()

biolib/api/client.py

@@ -1,8 +1,10 @@
-from urllib.parse import urljoin, urlencode
+from urllib.parse import urlencode, urljoin
 
-from biolib.typing_utils import Dict, Optional, Union
+import importlib_metadata
+
+from biolib._internal.http_client import HttpClient, HttpResponse
 from biolib.biolib_api_client import BiolibApiClient as DeprecatedApiClient
-from biolib._internal.http_client import HttpResponse, HttpClient
+from biolib.typing_utils import Dict, Optional, Union, cast
 
 OptionalHeaders = Union[
     Optional[Dict[str, str]],
@@ -10,14 +12,24 @@ OptionalHeaders = Union[
 ]
 
 
+def _get_biolib_package_version() -> str:
+    # try fetching version, if it fails (usually when in dev), add default
+    try:
+        return cast(str, importlib_metadata.version('pybiolib'))
+    except importlib_metadata.PackageNotFoundError:
+        return '0.0.0'
+
+
 class ApiClient(HttpClient):
+    _biolib_package_version: str = _get_biolib_package_version()
+
     def get(
-            self,
-            path: str,
-            params: Optional[Dict[str, Union[str, int]]] = None,
-            headers: OptionalHeaders = None,
-            authenticate: bool = True,
-            retries: int = 10,
+        self,
+        path: str,
+        params: Optional[Dict[str, Union[str, int]]] = None,
+        headers: OptionalHeaders = None,
+        authenticate: bool = True,
+        retries: int = 10,
     ) -> HttpResponse:
         return self.request(
             headers=self._get_headers(opt_headers=headers, authenticate=authenticate),
@@ -27,12 +39,12 @@ class ApiClient(HttpClient):
         )
 
     def post(
-            self,
-            path: str,
-            data: Optional[Union[Dict, bytes]] = None,
-            headers: OptionalHeaders = None,
-            authenticate: bool = True,
-            retries: int = 5,
+        self,
+        path: str,
+        data: Optional[Union[Dict, bytes]] = None,
+        headers: OptionalHeaders = None,
+        authenticate: bool = True,
+        retries: int = 5,
     ) -> HttpResponse:
         return self.request(
             data=data,
@@ -74,6 +86,9 @@ class ApiClient(HttpClient):
         if access_token and authenticate:
             headers['Authorization'] = f'Bearer {access_token}'
 
+        headers['client-type'] = 'biolib-python'
+        headers['client-version'] = ApiClient._biolib_package_version
+
         return headers
 
     @staticmethod

{pybiolib-1.1.2023.dist-info → pybiolib-1.1.2031.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2023
+Version: 1.1.2031
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2023.dist-info → pybiolib-1.1.2031.dist-info}/RECORD

@@ -3,7 +3,7 @@ README.md,sha256=_IH7pxFiqy2bIAmaVeA-iVTyUwWRjMIlfgtUbYTtmls,368
 biolib/__init__.py,sha256=nfZvVkrHZLvjvvlAvFzhvem9NMfqgmw8NWaCH9HGzew,4045
 biolib/_internal/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/_internal/data_record/__init__.py,sha256=1Bk303i3rFet9veS56fIsrBYtT5X3n9vcsYMA6T6c5o,36
-biolib/_internal/data_record/data_record.py,sha256=ctijrrZ-LfUxtwzS8PEVa1VBuBLVWEhmo2yHcEDkC0A,7178
+biolib/_internal/data_record/data_record.py,sha256=NLzeyzqtzB9QOVUDcEiOn2WbMdMijbjZGYgy_p592_c,7372
 biolib/_internal/data_record/remote_storage_endpoint.py,sha256=hILu0TmFx-ZyDYbWPC4QEPogP0RRVEqwgJc8OEHYp50,1742
 biolib/_internal/fuse_mount/__init__.py,sha256=B_tM6RM2dBw-vbpoHJC4X3tOAaN1H2RDvqYJOw3xFwg,55
 biolib/_internal/fuse_mount/experiment_fuse_mount.py,sha256=08aUdEq_bvqLBft_gSLjOClKDy5sBnMts1RfJf7AP_U,7012
@@ -13,8 +13,8 @@ biolib/_internal/libs/fusepy/__init__.py,sha256=AWDzNFS-XV_5yKb0Qx7kggIhPzq1nj_B
 biolib/_internal/push_application.py,sha256=H1PGNtVJ0vRC0li39gFMpPpjm6QeZ8Ob-7cLkLmxS_Y,10009
 biolib/_internal/runtime.py,sha256=BnFvRWYnxPXCgOtfxupN255Zxx9Gw6oPZyzUIGODw3k,3060
 biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd3As7c,630
-biolib/api/__init__.py,sha256=iIO8ZRdn7YDhY5cR47-Wo1YsNOK8H6RN6jn8yor5WJI,137
-biolib/api/client.py,sha256=-8Rwe-3WLyRbod4i70nM9_t7PqC1NucrHwgbTxfCA18,3051
+biolib/api/__init__.py,sha256=mQ4u8FijqyLzjYMezMUUbbBGNB3iFmkNdjXnWPZ7Jlw,138
+biolib/api/client.py,sha256=9MD1qI52BnRC_QSydFGjyFquwFw0R9dkDfUrjUouuHQ,3490
 biolib/app/__init__.py,sha256=cdPtcfb_U-bxb9iSL4fCEq2rpD9OjkyY4W-Zw60B0LI,37
 biolib/app/app.py,sha256=8AvPYL1W2wxQ7t7BB2KeVU2WPrm3UL6vVuHPGs8g9L0,8388
 biolib/app/search_apps.py,sha256=K4a41f5XIWth2BWI7OffASgIsD0ko8elCax8YL2igaY,1470
@@ -109,8 +109,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.2023.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.2023.dist-info/METADATA,sha256=70NFyEQo2lxFDn7DMiflWXEjB58w7HtD0bQHgQ5ORDc,1508
-pybiolib-1.1.2023.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.2023.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.2023.dist-info/RECORD,,
+pybiolib-1.1.2031.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.2031.dist-info/METADATA,sha256=nCqh-1SL4_FpMx4NUpk8FnW8lYn-wpUVIFEnScJ4BpI,1508
+pybiolib-1.1.2031.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.2031.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.2031.dist-info/RECORD,,