pybiolib 1.1.2017__py3-none-any.whl → 1.1.2025__py3-none-any.whl

biolib/_internal/data_record/data_record.py

@@ -22,11 +22,6 @@ PathFilter = Union[str, Callable[[str], bool]]
 class DataRecord:
     def __init__(self, uri: str):
         self._uri = uri
-        uri_parsed = parse_app_uri(uri, use_account_as_name_default=False)
-        if not uri_parsed['app_name']:
-            raise ValueError('Expected parameter "uri" to contain resource name')
-
-        self._name = uri_parsed['app_name']
 
     def __repr__(self):
         return f'DataRecord: {self._uri}'
@@ -37,7 +32,11 @@ class DataRecord:
 
     @property
     def name(self) -> str:
-        return self._name
+        uri_parsed = parse_app_uri(self.uri, use_account_as_name_default=False)
+        if not uri_parsed['app_name']:
+            raise ValueError('Expected parameter "uri" to contain resource name')
+
+        return uri_parsed['app_name']
 
     def list_files(self, path_filter: Optional[PathFilter] = None) -> List[LazyLoadedFile]:
         app_response: AppGetResponse = api_client.get(path='/app/', params={'uri': self._uri}).json()
@@ -76,6 +75,10 @@ class DataRecord:
     def save_files(self, output_dir: str, path_filter: Optional[PathFilter] = None) -> None:
         self.download_files(output_dir=output_dir, path_filter=path_filter)
 
+    def update(self, data_path: str) -> None:
+        assert os.path.isdir(data_path), f'The path "{data_path}" is not a directory.'
+        self._uri = lfs.push_large_file_system(lfs_uri=self._uri, input_dir=data_path)
+
     @staticmethod
     def create(destination: str, data_path: str, name: Optional[str] = None) -> 'DataRecord':
         assert os.path.isdir(data_path), f'The path "{data_path}" is not a directory.'

biolib/experiments/experiment.py

@@ -2,7 +2,8 @@ import time
 from collections import OrderedDict
 
 from biolib import api
-from biolib.biolib_errors import BioLibError
+from biolib._internal.http_client import HttpError
+from biolib.biolib_errors import BioLibError, NotFound
 from biolib.experiments.types import ExperimentDict
 from biolib.jobs.job import Job
 from biolib.jobs.types import JobsPaginatedResponse
@@ -22,8 +23,8 @@ class Experiment:
         }
     )
 
-    def __init__(self, name: str):
-        self._experiment_dict: ExperimentDict = self._create_in_backend_or_get_experiment_dict(name)
+    def __init__(self, uri: str):
+        self._experiment_dict: ExperimentDict = self._get_or_create_by_uri(uri)
 
     def __enter__(self):
         Experiment._BIOLIB_EXPERIMENTS.append(self)
@@ -151,13 +152,33 @@ class Experiment:
 
         return jobs
 
-    def rename(self, new_name: str) -> None:
-        api.client.patch(f'/apps/{self.uuid}/', data={'name': new_name}, params={'resource_type': 'experiment'})
+    def rename(self, name: Optional[str] = None, destination: Optional[str] = None) -> None:
+        if destination:
+            try:
+                account_id = api.client.get(path=f'/account/{destination}/').json()['uuid']
+            except HttpError as error:
+                if error.code == 404:
+                    raise NotFound(f'Destination "{destination}" not found.') from None
+                else:
+                    raise error
+
+            api.client.patch(
+                path=f'/apps/{self.uuid}/',
+                data={'account_id': account_id},
+                params={'resource_type': 'experiment'},
+            )
+
+        if name:
+            api.client.patch(path=f'/apps/{self.uuid}/', data={'name': name}, params={'resource_type': 'experiment'})
+
         self._refetch_experiment_dict()
 
-    def _create_in_backend_or_get_experiment_dict(self, name: str) -> ExperimentDict:
-        # This endpoint returns experiment dict if already created
-        experiment_dict: ExperimentDict = api.client.post(path='/experiments/', data={'name': name}).json()
+    @staticmethod
+    def _get_or_create_by_uri(uri: str) -> ExperimentDict:
+        experiment_dict: ExperimentDict = api.client.post(
+            path='/experiments/',
+            data={'uri' if '/' in uri else 'name': uri},
+        ).json()
         return experiment_dict
 
     def _refetch_experiment_dict(self) -> None:

{pybiolib-1.1.2017.dist-info → pybiolib-1.1.2025.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2017
+Version: 1.1.2025
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2017.dist-info → pybiolib-1.1.2025.dist-info}/RECORD

@@ -3,7 +3,7 @@ README.md,sha256=_IH7pxFiqy2bIAmaVeA-iVTyUwWRjMIlfgtUbYTtmls,368
 biolib/__init__.py,sha256=nfZvVkrHZLvjvvlAvFzhvem9NMfqgmw8NWaCH9HGzew,4045
 biolib/_internal/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/_internal/data_record/__init__.py,sha256=1Bk303i3rFet9veS56fIsrBYtT5X3n9vcsYMA6T6c5o,36
-biolib/_internal/data_record/data_record.py,sha256=ctijrrZ-LfUxtwzS8PEVa1VBuBLVWEhmo2yHcEDkC0A,7178
+biolib/_internal/data_record/data_record.py,sha256=NLzeyzqtzB9QOVUDcEiOn2WbMdMijbjZGYgy_p592_c,7372
 biolib/_internal/data_record/remote_storage_endpoint.py,sha256=hILu0TmFx-ZyDYbWPC4QEPogP0RRVEqwgJc8OEHYp50,1742
 biolib/_internal/fuse_mount/__init__.py,sha256=B_tM6RM2dBw-vbpoHJC4X3tOAaN1H2RDvqYJOw3xFwg,55
 biolib/_internal/fuse_mount/experiment_fuse_mount.py,sha256=08aUdEq_bvqLBft_gSLjOClKDy5sBnMts1RfJf7AP_U,7012
@@ -86,7 +86,7 @@ biolib/compute_node/webserver/webserver_types.py,sha256=Vmt1ZDecYhGBVEYWcW1DVxee
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
 biolib/compute_node/webserver/worker_thread.py,sha256=26tG73TADnOcXsAr7Iyf6smrLlCqB4x-vvmpUb8WqnA,11569
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/experiments/experiment.py,sha256=aQZX39fnO0yer376aygR5XvkYJnSAGmRf6N1bBM5KIM,6579
+biolib/experiments/experiment.py,sha256=IMjnokTc9ZEKUjpsM_JnFolh9HsLbjXus_xKBb2ypJ8,7219
 biolib/experiments/types.py,sha256=n9GxdFA7cLMfHvLLqLmZzX31ELeSSkMXFoEEdFsdWGY,171
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
 biolib/jobs/job.py,sha256=aWKnf_2pYdr76gh3hxPiVs2iuXlpwZkKPTK81Pz4G2U,19072
@@ -109,8 +109,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.2017.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.2017.dist-info/METADATA,sha256=7yd67jkWUKoSiuTb6hvv-YSQ4ocGeqpI-kxytLqdMHY,1508
-pybiolib-1.1.2017.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.2017.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.2017.dist-info/RECORD,,
+pybiolib-1.1.2025.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.2025.dist-info/METADATA,sha256=6lmW6PO_BxMu1HXkuURGnOWspzomoeU21nIvSVBemDg,1508
+pybiolib-1.1.2025.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.2025.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.2025.dist-info/RECORD,,