pybiolib 1.1.2013__py3-none-any.whl → 1.1.2023__py3-none-any.whl

biolib/api/client.py

@@ -42,13 +42,20 @@ class ApiClient(HttpClient):
             url=self._get_absolute_url(path=path, query_params=None),
         )
 
-    def patch(self, path: str, data: Dict, headers: OptionalHeaders = None, retries: int = 5) -> HttpResponse:
+    def patch(
+        self,
+        path: str,
+        data: Dict,
+        headers: OptionalHeaders = None,
+        retries: int = 5,
+        params: Optional[Dict[str, Union[str, int]]] = None,
+    ) -> HttpResponse:
         return self.request(
             data=data,
             headers=self._get_headers(opt_headers=headers, authenticate=True),
             method='PATCH',
             retries=retries,
-            url=self._get_absolute_url(path=path, query_params=None),
+            url=self._get_absolute_url(path=path, query_params=params),
         )
 
     @staticmethod

biolib/experiments/experiment.py

@@ -2,7 +2,8 @@ import time
 from collections import OrderedDict
 
 from biolib import api
-from biolib.biolib_errors import BioLibError
+from biolib._internal.http_client import HttpError
+from biolib.biolib_errors import BioLibError, NotFound
 from biolib.experiments.types import ExperimentDict
 from biolib.jobs.job import Job
 from biolib.jobs.types import JobsPaginatedResponse
@@ -22,8 +23,8 @@ class Experiment:
         }
     )
 
-    def __init__(self, name: str):
-        self._experiment_dict: ExperimentDict = self._create_in_backend_or_get_experiment_dict(name)
+    def __init__(self, uri: str):
+        self._experiment_dict: ExperimentDict = self._get_or_create_by_uri(uri)
 
     def __enter__(self):
         Experiment._BIOLIB_EXPERIMENTS.append(self)
@@ -151,9 +152,33 @@ class Experiment:
 
         return jobs
 
-    def _create_in_backend_or_get_experiment_dict(self, name: str) -> ExperimentDict:
-        # This endpoint returns experiment dict if already created
-        experiment_dict: ExperimentDict = api.client.post(path='/experiments/', data={'name': name}).json()
+    def rename(self, name: Optional[str] = None, destination: Optional[str] = None) -> None:
+        if destination:
+            try:
+                account_id = api.client.get(path=f'/account/{destination}/').json()['uuid']
+            except HttpError as error:
+                if error.code == 404:
+                    raise NotFound(f'Destination "{destination}" not found.') from None
+                else:
+                    raise error
+
+            api.client.patch(
+                path=f'/apps/{self.uuid}/',
+                data={'account_id': account_id},
+                params={'resource_type': 'experiment'},
+            )
+
+        if name:
+            api.client.patch(path=f'/apps/{self.uuid}/', data={'name': name}, params={'resource_type': 'experiment'})
+
+        self._refetch_experiment_dict()
+
+    @staticmethod
+    def _get_or_create_by_uri(uri: str) -> ExperimentDict:
+        experiment_dict: ExperimentDict = api.client.post(
+            path='/experiments/',
+            data={'uri' if '/' in uri else 'name': uri},
+        ).json()
         return experiment_dict
 
     def _refetch_experiment_dict(self) -> None:

{pybiolib-1.1.2013.dist-info → pybiolib-1.1.2023.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.2013
+Version: 1.1.2023
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.2013.dist-info → pybiolib-1.1.2023.dist-info}/RECORD

@@ -14,7 +14,7 @@ biolib/_internal/push_application.py,sha256=H1PGNtVJ0vRC0li39gFMpPpjm6QeZ8Ob-7cL
 biolib/_internal/runtime.py,sha256=BnFvRWYnxPXCgOtfxupN255Zxx9Gw6oPZyzUIGODw3k,3060
 biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd3As7c,630
 biolib/api/__init__.py,sha256=iIO8ZRdn7YDhY5cR47-Wo1YsNOK8H6RN6jn8yor5WJI,137
-biolib/api/client.py,sha256=MtDkH2Amr2Fko-bCR5DdookJu0yZ1q-6K_PPg4KK_Ek,2941
+biolib/api/client.py,sha256=-8Rwe-3WLyRbod4i70nM9_t7PqC1NucrHwgbTxfCA18,3051
 biolib/app/__init__.py,sha256=cdPtcfb_U-bxb9iSL4fCEq2rpD9OjkyY4W-Zw60B0LI,37
 biolib/app/app.py,sha256=8AvPYL1W2wxQ7t7BB2KeVU2WPrm3UL6vVuHPGs8g9L0,8388
 biolib/app/search_apps.py,sha256=K4a41f5XIWth2BWI7OffASgIsD0ko8elCax8YL2igaY,1470
@@ -86,7 +86,7 @@ biolib/compute_node/webserver/webserver_types.py,sha256=Vmt1ZDecYhGBVEYWcW1DVxee
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
 biolib/compute_node/webserver/worker_thread.py,sha256=26tG73TADnOcXsAr7Iyf6smrLlCqB4x-vvmpUb8WqnA,11569
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/experiments/experiment.py,sha256=_ied3A3U6NFa6_ewEYn2TCozqeHvDxDqdRhMtZbFL-M,6380
+biolib/experiments/experiment.py,sha256=IMjnokTc9ZEKUjpsM_JnFolh9HsLbjXus_xKBb2ypJ8,7219
 biolib/experiments/types.py,sha256=n9GxdFA7cLMfHvLLqLmZzX31ELeSSkMXFoEEdFsdWGY,171
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
 biolib/jobs/job.py,sha256=aWKnf_2pYdr76gh3hxPiVs2iuXlpwZkKPTK81Pz4G2U,19072
@@ -109,8 +109,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.2013.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.2013.dist-info/METADATA,sha256=B93geN5rthLJykSPAxcveRjO45iKhcoMeMi_MyQYXw0,1508
-pybiolib-1.1.2013.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.2013.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.2013.dist-info/RECORD,,
+pybiolib-1.1.2023.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.2023.dist-info/METADATA,sha256=70NFyEQo2lxFDn7DMiflWXEjB58w7HtD0bQHgQ5ORDc,1508
+pybiolib-1.1.2023.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.2023.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.2023.dist-info/RECORD,,