pybiolib 1.1.1986__py3-none-any.whl → 1.1.1990__py3-none-any.whl

biolib/_internal/fuse_mount/experiment_fuse_mount.py

@@ -21,6 +21,9 @@ class _AttributeDict(TypedDict):
     st_uid: int
 
 
+_SUCCESS_CODE = 0
+
+
 class ExperimentFuseMount(Operations):
     def __init__(self, experiment):
         self._experiment = experiment
@@ -97,7 +100,7 @@ class ExperimentFuseMount(Operations):
             # file not found
             raise FuseOSError(errno.ENOENT) from None
 
-        return 0  # return dummy file handle
+        return 1234  # dummy file handle
 
     def read(self, path: str, size: int, offset: int, fh: int) -> bytes:
         job, path_in_job = self._parse_path(path)
@@ -109,10 +112,13 @@ class ExperimentFuseMount(Operations):
         return file.get_data(start=offset, length=size)
 
     def release(self, path: str, fh: int) -> int:
-        return 0
+        return _SUCCESS_CODE
 
     def releasedir(self, path: str, fh: int) -> int:
-        return 0
+        return _SUCCESS_CODE
+
+    def flush(self, path: str, fh: int) -> int:
+        return _SUCCESS_CODE
 
     @staticmethod
     def _get_directory_attributes(timestamp_epoch_seconds: int) -> _AttributeDict:
@@ -199,8 +205,5 @@ class ExperimentFuseMount(Operations):
     def truncate(self, path, length, fh=None):
         raise FuseOSError(errno.EACCES)
 
-    def flush(self, path, fh):
-        raise FuseOSError(errno.EACCES)
-
     def fsync(self, path, datasync, fh):
         raise FuseOSError(errno.EACCES)

biolib/biolib_api_client/app_types.py

@@ -99,6 +99,7 @@ class _AppVersionOnJob(TypedDict):
 
 class AppOnJob(TypedDict):
     allow_client_side_execution: bool
+    can_access_all_data_records_of_user: bool
     can_push_data_record_for_user: bool
     state: Literal['public', 'draft']
 

biolib/compute_node/job_worker/job_worker.py

@@ -317,6 +317,7 @@ class JobWorker:
                         job_id,
                         ports,
                         can_push_data_record_for_user=app.get('can_push_data_record_for_user', False),
+                        can_access_all_data_records_of_user=app.get('can_access_all_data_records_of_user', False),
                     )
                     remote_host_proxy.start()
                     self._remote_host_proxies.append(remote_host_proxy)

biolib/compute_node/remote_host_proxy.py

@@ -31,8 +31,10 @@ class RemoteHostProxy:
         job_id: str,
         ports: List[int],
         can_push_data_record_for_user: bool,
+        can_access_all_data_records_of_user: bool,
     ):
         self._can_push_data_record_for_user: bool = can_push_data_record_for_user
+        self._can_access_all_data_records_of_user: bool = can_access_all_data_records_of_user
         self.is_app_caller_proxy = remote_host['hostname'] == 'AppCallerProxy'
         self._remote_host: RemoteHostExtended = RemoteHostExtended(hostname=remote_host['hostname'], ports=ports)
         self._public_network: Network = public_network
@@ -297,7 +299,7 @@ http {{
 
         location /api/lfs/ {{
             proxy_pass               {base_url}/api/lfs/;
-            proxy_set_header         authorization {'$bearer_token_on_post_and_get' if self._can_push_data_record_for_user else '""'};
+            proxy_set_header         authorization {'$bearer_token_on_post_and_get' if self._can_push_data_record_for_user else '$bearer_token_on_get' if self._can_access_all_data_records_of_user else '""'};
             proxy_set_header         cookie "";
             proxy_ssl_server_name    on;
         }}
@@ -337,7 +339,7 @@ http {{
             proxy_set_header         cookie "";
             proxy_ssl_server_name    on;
         }}
-        """ if self._can_push_data_record_for_user else ''}
+        """ if self._can_push_data_record_for_user or self._can_access_all_data_records_of_user else ''}
 
         location /proxy/cloud/ {{
             proxy_pass               {cloud_base_url}/proxy/cloud/;

{pybiolib-1.1.1986.dist-info → pybiolib-1.1.1990.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.1986
+Version: 1.1.1990
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.1986.dist-info → pybiolib-1.1.1990.dist-info}/RECORD

@@ -6,7 +6,7 @@ biolib/_internal/data_record/__init__.py,sha256=1Bk303i3rFet9veS56fIsrBYtT5X3n9v
 biolib/_internal/data_record/data_record.py,sha256=ctijrrZ-LfUxtwzS8PEVa1VBuBLVWEhmo2yHcEDkC0A,7178
 biolib/_internal/data_record/remote_storage_endpoint.py,sha256=LPq8Lr5FhKF9_o5K-bUdT7TeLe5XFUD0AAeTkNEVZug,1133
 biolib/_internal/fuse_mount/__init__.py,sha256=B_tM6RM2dBw-vbpoHJC4X3tOAaN1H2RDvqYJOw3xFwg,55
-biolib/_internal/fuse_mount/experiment_fuse_mount.py,sha256=MjGY9vNL-QivDF8w4qKuF3P7auv5cGK9qKKYYyDYQY4,6966
+biolib/_internal/fuse_mount/experiment_fuse_mount.py,sha256=08aUdEq_bvqLBft_gSLjOClKDy5sBnMts1RfJf7AP_U,7012
 biolib/_internal/http_client.py,sha256=DdooXei93JKGYGV4aQmzue_oFzvHkozg2UCxgk9dfDM,5081
 biolib/_internal/libs/__init__.py,sha256=Jdf4tNPqe_oIIf6zYml6TiqhL_02Vyqwge6IELrAFhw,98
 biolib/_internal/libs/fusepy/__init__.py,sha256=AWDzNFS-XV_5yKb0Qx7kggIhPzq1nj_BZS5y2Nso08k,41944
@@ -20,7 +20,7 @@ biolib/app/app.py,sha256=8AvPYL1W2wxQ7t7BB2KeVU2WPrm3UL6vVuHPGs8g9L0,8388
 biolib/app/search_apps.py,sha256=K4a41f5XIWth2BWI7OffASgIsD0ko8elCax8YL2igaY,1470
 biolib/biolib_api_client/__init__.py,sha256=E5EMa19wJoblwSdQPYrxc_BtIeRsAuO0L_jQweWw-Yk,182
 biolib/biolib_api_client/api_client.py,sha256=J03jRVvod1bgwwAZ3BZVKlUSJi43-ev2DUB0j63GZpc,7189
-biolib/biolib_api_client/app_types.py,sha256=rEw4HICV7ujdmlzM3BjRcMNMbiYItliivpH0rkeJx4s,2465
+biolib/biolib_api_client/app_types.py,sha256=NpOFN9oVF08qpo2nXhKwC_AQYAIuSoqn9FeqGXTWhx8,2511
 biolib/biolib_api_client/auth.py,sha256=kjm0ZHnH3I8so3su2sZbBxNHYp-ZUdrZ5lwQ0K36RSw,949
 biolib/biolib_api_client/biolib_app_api.py,sha256=DndlVxrNTes6DOaWyMINLGZQCRMWVvR7gwt5HVlyf5Y,4240
 biolib/biolib_api_client/biolib_job_api.py,sha256=IpFahcRzm7GNy8DJ-XHYe-x7r4Voba8o22IXw5puHn8,6782
@@ -70,12 +70,12 @@ biolib/compute_node/job_worker/executors/types.py,sha256=yP5gG39hr-DLnw9bOE--VHi
 biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py,sha256=_cvEiZbOwfkv6fYmfrvdi_FVviIEYr_dSClQcOQaUWM,1198
 biolib/compute_node/job_worker/job_max_runtime_timer_thread.py,sha256=K_xgz7IhiIjpLlXRk8sqaMyLoApcidJkgu29sJX0gb8,1174
 biolib/compute_node/job_worker/job_storage.py,sha256=LNkklckDLbYgCHsK5FGrEK75Kw-H4f4JcTCAtuE9His,4035
-biolib/compute_node/job_worker/job_worker.py,sha256=LH8URvDXHa2TT9yk5zUN0RKJGnf4h7WMVx70yQ8GniI,28986
+biolib/compute_node/job_worker/job_worker.py,sha256=KDtj3rKokZVKx323-Z0brd5paSYIN6AOhPLHyYQjT5E,29101
 biolib/compute_node/job_worker/large_file_system.py,sha256=XXqRlVtYhs-Ji9zQGIk5KQPXFO_Q5jJH0nnlw4GkeMY,10461
 biolib/compute_node/job_worker/mappings.py,sha256=Z48Kg4nbcOvsT2-9o3RRikBkqflgO4XeaWxTGz-CNvI,2499
 biolib/compute_node/job_worker/utilization_reporter_thread.py,sha256=7tm5Yk9coqJ9VbEdnO86tSXI0iM0omwIyKENxdxiVXk,8575
 biolib/compute_node/job_worker/utils.py,sha256=wgxcIA8yAhUPdCwyvuuJ0JmreyWmmUoBO33vWtG60xg,1282
-biolib/compute_node/remote_host_proxy.py,sha256=a9dlAETI727ejmk07jMGPAmiliBoy4t1yfX_NkLoIZ4,15768
+biolib/compute_node/remote_host_proxy.py,sha256=1YE1GcZswEfi7X4oLMHAqm5iyTpgaXfNoP2o4IfapE4,16031
 biolib/compute_node/socker_listener_thread.py,sha256=T5_UikA3MB9bD5W_dckYLPTgixh72vKUlgbBvj9dbM0,1601
 biolib/compute_node/socket_sender_thread.py,sha256=YgamPHeUm2GjMFGx8qk-99WlZhEs-kAb3q_2O6qByig,971
 biolib/compute_node/utils.py,sha256=M7i_WTyxbFM3Lri9RWZ_8FeQNYrQIWpKGLfp2I55oeY,4677
@@ -109,8 +109,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.1986.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.1986.dist-info/METADATA,sha256=p82i2WtF6K3qM7lWMT00MKh7Eqp2HuFOrqZEeEU98_0,1508
-pybiolib-1.1.1986.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.1986.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.1986.dist-info/RECORD,,
+pybiolib-1.1.1990.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.1990.dist-info/METADATA,sha256=caKeGITxdxV7LaEVBD3KdmF13EmtBZBBkbG3fZN2KDs,1508
+pybiolib-1.1.1990.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.1990.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.1990.dist-info/RECORD,,