pybiolib 1.1.1984__py3-none-any.whl → 1.1.1988__py3-none-any.whl

biolib/_internal/fuse_mount/experiment_fuse_mount.py

@@ -21,6 +21,9 @@ class _AttributeDict(TypedDict):
     st_uid: int
 
 
+_SUCCESS_CODE = 0
+
+
 class ExperimentFuseMount(Operations):
     def __init__(self, experiment):
         self._experiment = experiment
@@ -29,10 +32,10 @@ class ExperimentFuseMount(Operations):
         self._mounted_at_epoch_seconds: int = int(time())
 
     @staticmethod
-    def mount(experiment, path: str) -> None:
+    def mount_experiment(experiment, mount_path: str) -> None:
         FUSE(
             operations=ExperimentFuseMount(experiment),
-            mountpoint=path,
+            mountpoint=mount_path,
             nothreads=True,
             foreground=True,
             allow_other=False,
@@ -97,7 +100,7 @@ class ExperimentFuseMount(Operations):
             # file not found
             raise FuseOSError(errno.ENOENT) from None
 
-        return 0  # return dummy file handle
+        return 1234  # dummy file handle
 
     def read(self, path: str, size: int, offset: int, fh: int) -> bytes:
         job, path_in_job = self._parse_path(path)
@@ -108,6 +111,15 @@ class ExperimentFuseMount(Operations):
 
         return file.get_data(start=offset, length=size)
 
+    def release(self, path: str, fh: int) -> int:
+        return _SUCCESS_CODE
+
+    def releasedir(self, path: str, fh: int) -> int:
+        return _SUCCESS_CODE
+
+    def flush(self, path: str, fh: int) -> int:
+        return _SUCCESS_CODE
+
     @staticmethod
     def _get_directory_attributes(timestamp_epoch_seconds: int) -> _AttributeDict:
         return _AttributeDict(
@@ -193,11 +205,5 @@ class ExperimentFuseMount(Operations):
     def truncate(self, path, length, fh=None):
         raise FuseOSError(errno.EACCES)
 
-    def flush(self, path, fh):
-        raise FuseOSError(errno.EACCES)
-
-    def release(self, path, fh):
-        raise FuseOSError(errno.EACCES)
-
     def fsync(self, path, datasync, fh):
         raise FuseOSError(errno.EACCES)

biolib/experiments/experiment.py

@@ -73,7 +73,7 @@ class Experiment:
     def add_job(self, job_id: str) -> None:
         api.client.patch(path=f'/jobs/{job_id}/', data={'experiment_uuid': self.uuid})
 
-    def mount_files(self, path: str) -> None:
+    def mount_files(self, mount_path: str) -> None:
         try:
             # Only attempt to import FUSE dependencies when strictly necessary
             from biolib._internal.fuse_mount import (  # pylint: disable=import-outside-toplevel
@@ -84,7 +84,7 @@ class Experiment:
                 'Failed to import FUSE mounting utils. Please ensure FUSE is installed on your system.'
             ) from error
 
-        _ExperimentFuseMount.mount(experiment=self, path=path)
+        _ExperimentFuseMount.mount_experiment(experiment=self, mount_path=mount_path)
 
     def export_job_list(self, export_format='dicts'):
         valid_formats = ('dicts', 'dataframe')

{pybiolib-1.1.1984.dist-info → pybiolib-1.1.1988.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.1984
+Version: 1.1.1988
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.1984.dist-info → pybiolib-1.1.1988.dist-info}/RECORD

@@ -6,7 +6,7 @@ biolib/_internal/data_record/__init__.py,sha256=1Bk303i3rFet9veS56fIsrBYtT5X3n9v
 biolib/_internal/data_record/data_record.py,sha256=ctijrrZ-LfUxtwzS8PEVa1VBuBLVWEhmo2yHcEDkC0A,7178
 biolib/_internal/data_record/remote_storage_endpoint.py,sha256=LPq8Lr5FhKF9_o5K-bUdT7TeLe5XFUD0AAeTkNEVZug,1133
 biolib/_internal/fuse_mount/__init__.py,sha256=B_tM6RM2dBw-vbpoHJC4X3tOAaN1H2RDvqYJOw3xFwg,55
-biolib/_internal/fuse_mount/experiment_fuse_mount.py,sha256=DcR2NyUyZYgpsaKM1WBJZChAaD2vvt_vvZCXj-P2UTs,6878
+biolib/_internal/fuse_mount/experiment_fuse_mount.py,sha256=08aUdEq_bvqLBft_gSLjOClKDy5sBnMts1RfJf7AP_U,7012
 biolib/_internal/http_client.py,sha256=DdooXei93JKGYGV4aQmzue_oFzvHkozg2UCxgk9dfDM,5081
 biolib/_internal/libs/__init__.py,sha256=Jdf4tNPqe_oIIf6zYml6TiqhL_02Vyqwge6IELrAFhw,98
 biolib/_internal/libs/fusepy/__init__.py,sha256=AWDzNFS-XV_5yKb0Qx7kggIhPzq1nj_BZS5y2Nso08k,41944
@@ -86,7 +86,7 @@ biolib/compute_node/webserver/webserver_types.py,sha256=Vmt1ZDecYhGBVEYWcW1DVxee
 biolib/compute_node/webserver/webserver_utils.py,sha256=XWvwYPbWNR3qS0FYbLLp-MDDfVk0QdaAmg3xPrT0H2s,4234
 biolib/compute_node/webserver/worker_thread.py,sha256=26tG73TADnOcXsAr7Iyf6smrLlCqB4x-vvmpUb8WqnA,11569
 biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-biolib/experiments/experiment.py,sha256=kUQsH9AGAckPKT_nzaRuTh8Mb2pVUpxnuX9IstRTOEo,6351
+biolib/experiments/experiment.py,sha256=_ied3A3U6NFa6_ewEYn2TCozqeHvDxDqdRhMtZbFL-M,6380
 biolib/experiments/types.py,sha256=n9GxdFA7cLMfHvLLqLmZzX31ELeSSkMXFoEEdFsdWGY,171
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
 biolib/jobs/job.py,sha256=aWKnf_2pYdr76gh3hxPiVs2iuXlpwZkKPTK81Pz4G2U,19072
@@ -109,8 +109,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.1984.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.1984.dist-info/METADATA,sha256=PO0Sif5QkYXg1P20p7306bX-CXn6-Mpee7epEsP-1Fo,1508
-pybiolib-1.1.1984.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.1984.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.1984.dist-info/RECORD,,
+pybiolib-1.1.1988.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.1988.dist-info/METADATA,sha256=XIgluZ7kse6hsGgEvV_WuogxaTHLLDbqp-ogSllCZmg,1508
+pybiolib-1.1.1988.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.1988.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.1988.dist-info/RECORD,,