pybiolib 1.1.1917__py3-none-any.whl → 1.1.1923__py3-none-any.whl

biolib/_internal/data_record/data_record.py

@@ -28,6 +28,9 @@ class DataRecord:
 
         self._name = uri_parsed['app_name']
 
+    def __repr__(self):
+        return f'DataRecord: {self._uri}'
+
     @property
     def uri(self) -> str:
         return self._uri
@@ -91,6 +94,8 @@ class DataRecord:
         if uri:
             uri_parsed = parse_app_uri(uri, use_account_as_name_default=False)
             params['account_handle'] = uri_parsed['account_handle_normalized']
+            if uri_parsed['app_name_normalized']:
+                params['app_name'] = uri_parsed['app_name_normalized']
 
         results = api_client.get(path='/apps/', params=params).json()['results']
         if count is None and len(results) == max_page_size:

biolib/_internal/runtime.py

@@ -9,6 +9,7 @@ class RuntimeJobDataDict(TypedDict):
     job_requested_machine: str
     job_uuid: str
     job_auth_token: str
+    app_uri: str
 
 
 class BioLibRuntimeError(Exception):
@@ -40,6 +41,10 @@ class Runtime:
     def get_job_requested_machine() -> str:
         return Runtime._get_job_data()['job_requested_machine']
 
+    @staticmethod
+    def get_app_uri() -> str:
+        return Runtime._get_job_data()['app_uri']
+
     @staticmethod
     def set_main_result_prefix(result_prefix: str) -> None:
         job_data = Runtime._get_job_data()

biolib/biolib_api_client/job_types.py

@@ -15,6 +15,7 @@ class JobState(Enum):
 
 
 class _Job(TypedDict):
+    app_uri: str
     app_version: AppVersionOnJob
     arguments_override_command: bool
     auth_token: str
@@ -22,10 +23,10 @@ class _Job(TypedDict):
     created_at: str
     federated_job_uuid: Optional[str]
     public_id: str
-    uuid: str
     remote_hosts_with_warning: List[RemoteHost]
     state: str
     user_id: Optional[str]
+    uuid: str
 
 
 # type optional keys with total=False

biolib/compute_node/job_worker/executors/docker_executor.py

@@ -275,6 +275,7 @@ class DockerExecutor:
                 job_requested_machine=self._options['job']['requested_machine'],
                 job_uuid=self._options['job']['public_id'],
                 job_auth_token=self._options['job']['auth_token'],
+                app_uri=self._options['job']['app_uri'],
             )
             secrets: Dict[str, str] = dict(
                 **module.get('secrets', {}),

biolib/sdk/__init__.py

@@ -1,11 +1,11 @@
 # Imports to hide and use as private internal utils
-from biolib._internal.data_record import DataRecord as _DataRecord
 from biolib._internal.push_application import push_application as _push_application
 from biolib._internal.push_application import set_app_version_as_active as _set_app_version_as_active
 from biolib.app import BioLibApp as _BioLibApp
 from biolib.typing_utils import Optional as _Optional
 
 # Imports to expose as public API
+from biolib._internal.data_record import DataRecord
 from biolib._internal.runtime import Runtime
 
 
@@ -42,5 +42,5 @@ def get_app_version_pytest_plugin(app_version: _BioLibApp):
     return AppVersionFixturePlugin(app_version)
 
 
-def create_data_record(destination: str, data_path: str, name: _Optional[str] = None) -> _DataRecord:
-    return _DataRecord.create(destination, data_path, name)
+def create_data_record(destination: str, data_path: str, name: _Optional[str] = None) -> DataRecord:
+    return DataRecord.create(destination, data_path, name)

{pybiolib-1.1.1917.dist-info → pybiolib-1.1.1923.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.1917
+Version: 1.1.1923
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.1917.dist-info → pybiolib-1.1.1923.dist-info}/RECORD

@@ -3,11 +3,11 @@ README.md,sha256=_IH7pxFiqy2bIAmaVeA-iVTyUwWRjMIlfgtUbYTtmls,368
 biolib/__init__.py,sha256=nfZvVkrHZLvjvvlAvFzhvem9NMfqgmw8NWaCH9HGzew,4045
 biolib/_internal/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/_internal/data_record/__init__.py,sha256=1Bk303i3rFet9veS56fIsrBYtT5X3n9vcsYMA6T6c5o,36
-biolib/_internal/data_record/data_record.py,sha256=brvr88Ri1ro-tHZ-_1S19mX5Yt4Tm7q1c5AoUZfpSNY,6990
+biolib/_internal/data_record/data_record.py,sha256=ctijrrZ-LfUxtwzS8PEVa1VBuBLVWEhmo2yHcEDkC0A,7178
 biolib/_internal/data_record/remote_storage_endpoint.py,sha256=LPq8Lr5FhKF9_o5K-bUdT7TeLe5XFUD0AAeTkNEVZug,1133
 biolib/_internal/http_client.py,sha256=38PHvRkqdjcOgRXkWU7UoYCQxHMX0eKpuwKhudDupII,4525
 biolib/_internal/push_application.py,sha256=H1PGNtVJ0vRC0li39gFMpPpjm6QeZ8Ob-7cLkLmxS_Y,10009
-biolib/_internal/runtime.py,sha256=un18gmB2wFOXVjKca1Oe6mZI-xGydz8C8seScNvnC2s,2197
+biolib/_internal/runtime.py,sha256=2tNMuLtnlRzxDIPgvtJ305V89-7zdnWTi2vnxysK-EA,2313
 biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd3As7c,630
 biolib/api/__init__.py,sha256=iIO8ZRdn7YDhY5cR47-Wo1YsNOK8H6RN6jn8yor5WJI,137
 biolib/api/client.py,sha256=MtDkH2Amr2Fko-bCR5DdookJu0yZ1q-6K_PPg4KK_Ek,2941
@@ -21,7 +21,7 @@ biolib/biolib_api_client/auth.py,sha256=kjm0ZHnH3I8so3su2sZbBxNHYp-ZUdrZ5lwQ0K36
 biolib/biolib_api_client/biolib_app_api.py,sha256=DndlVxrNTes6DOaWyMINLGZQCRMWVvR7gwt5HVlyf5Y,4240
 biolib/biolib_api_client/biolib_job_api.py,sha256=IpFahcRzm7GNy8DJ-XHYe-x7r4Voba8o22IXw5puHn8,6782
 biolib/biolib_api_client/common_types.py,sha256=RH-1KNHqUF-EkTpfPOSTt5Mq1GPdfju_cqXDesscO1I,123
-biolib/biolib_api_client/job_types.py,sha256=XlDIxijxymLoJcClXhl91h1E4b2fT3pszO9wjlssD4A,1284
+biolib/biolib_api_client/job_types.py,sha256=MUzXv7nCsoLiPxdC3D4mZe9a4xTeq7FgxTElLVwVhnw,1301
 biolib/biolib_api_client/lfs_types.py,sha256=xaGjE-yUyNVM3LyKdslJn5ZXWp6_kVCd4o-ch8Czfm4,227
 biolib/biolib_api_client/user_state.py,sha256=XcgWV-MgVk88mIlMmnu8yHxMu8OCaw8o0tk7TVo5Hcg,637
 biolib/biolib_binary_format/__init__.py,sha256=HMl5SdX_VUWE4OQzi4Jf_yFvC7b0bSPOGPHYi9dWM2Q,185
@@ -59,7 +59,7 @@ biolib/compute_node/job_worker/cache_state.py,sha256=MwjSRzcJJ_4jybqvBL4xdgnDYSI
 biolib/compute_node/job_worker/cache_types.py,sha256=ajpLy8i09QeQS9dEqTn3T6NVNMY_YsHQkSD5nvIHccQ,818
 biolib/compute_node/job_worker/docker_image_cache.py,sha256=ansHIkJIq_EMW1nZNlW-RRLVVeKWTbzNICYaOHpKiRE,7460
 biolib/compute_node/job_worker/executors/__init__.py,sha256=bW6t1qi3PZTlHM4quaTLa8EI4ALTCk83cqcVJfJfJfE,145
-biolib/compute_node/job_worker/executors/docker_executor.py,sha256=n4BEn-bdL10uVvMDwBazK14NY25Fy_IhKY1fNRoX8LI,26455
+biolib/compute_node/job_worker/executors/docker_executor.py,sha256=Mh1Vnamq68iE_Vvd4WlrmY0CnDVW_4QTdVJoTJJyGsE,26512
 biolib/compute_node/job_worker/executors/docker_types.py,sha256=VhsU1DKtJjx_BbCkVmiPZPH4ROiL1ygW1Y_s1Kbpa2o,216
 biolib/compute_node/job_worker/executors/tars/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/compute_node/job_worker/executors/types.py,sha256=yP5gG39hr-DLnw9bOE--VHi-1arDbIYiGuV1rlTbbHI,1466
@@ -92,7 +92,7 @@ biolib/lfs/__init__.py,sha256=Qv8vdYeK43JecT4SsE93ZYE2VmNiZENdNpW8P9-omxs,115
 biolib/lfs/cache.py,sha256=pQS2np21rdJ6I3DpoOutnzPHpLOZgUIS8TMltUJk_k4,2226
 biolib/lfs/utils.py,sha256=HSs7F2wXklYhhv5tabfaeC5noXJyxRjbGD5IhWOVdxs,5918
 biolib/runtime/__init__.py,sha256=x1Ivydtu9TFTaX-Cofg_kGA-TI0zLon-ccrFiiVgBok,492
-biolib/sdk/__init__.py,sha256=77IBthMbwgmYymjQwLP4ny1X2ikvI1I0ocP6Eyzfyaw,1766
+biolib/sdk/__init__.py,sha256=wkQs7ltIpYK9Xw0-FLLacblemmlNGz8J2UmlM0noGSs,1749
 biolib/tables.py,sha256=acH7VjwAbadLo8P84FSnKEZxCTVsF5rEg9VPuxElNs8,872
 biolib/templates/__init__.py,sha256=Yx62sSyDCDesRQDQgmbDsLpfgEh93fWE8r9u4g2azXk,36
 biolib/templates/example_app.py,sha256=EB3E3RT4SeO_ii5nVQqJpi5KDGNE_huF1ub-e5ZFveE,715
@@ -105,8 +105,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.1917.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.1917.dist-info/METADATA,sha256=CbmBzNSp1CoLuExmlbJMLgszUxT1SxrRYAVpYhWKF9o,1508
-pybiolib-1.1.1917.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.1917.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.1917.dist-info/RECORD,,
+pybiolib-1.1.1923.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.1923.dist-info/METADATA,sha256=XuWBDlZoUHa6Acz6GcH5MjQZX7M61sdE8h8RtcQuf3U,1508
+pybiolib-1.1.1923.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.1923.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.1923.dist-info/RECORD,,