pybiolib 1.1.1907__py3-none-any.whl → 1.1.1917__py3-none-any.whl

biolib/_internal/http_client.py

@@ -47,7 +47,8 @@ class HttpResponse:
         self.status_code: int = int(response.status)
         self.response_path = response_path
         if self.response_path:
-            shutil.copyfileobj(response, self.response_path)
+            with open(self.response_path, 'wb') as out_file:
+                shutil.copyfileobj(response, out_file)
         else:
             self.content: bytes = response.read()
         self.url: str = response.geturl()

biolib/jobs/job.py

@@ -1,9 +1,9 @@
 import base64
-from datetime import datetime, timedelta
 import sys
 import time
-from pathlib import Path
 from collections import OrderedDict
+from datetime import datetime, timedelta
+from pathlib import Path
 from urllib.parse import urlparse
 
 from biolib import api, utils
@@ -11,15 +11,15 @@ from biolib._internal.http_client import HttpClient
 from biolib._internal.utils import open_browser_window_from_notebook
 from biolib.biolib_api_client import BiolibApiClient
 from biolib.biolib_api_client.biolib_job_api import BiolibJobApi
-from biolib.biolib_binary_format import LazyLoadedFile, ModuleOutputV2, ModuleInput, ModuleInputDict
+from biolib.biolib_binary_format import LazyLoadedFile, ModuleInput, ModuleInputDict, ModuleOutputV2
 from biolib.biolib_binary_format.stdout_and_stderr import StdoutAndStderr
 from biolib.biolib_errors import BioLibError, CloudJobFinishedError
 from biolib.biolib_logging import logger, logger_no_user_data
 from biolib.compute_node.utils import SystemExceptionCodeMap, SystemExceptionCodes
 from biolib.jobs.job_result import JobResult
-from biolib.jobs.types import JobDict, CloudJobStartedDict, CloudJobDict
+from biolib.jobs.types import CloudJobDict, CloudJobStartedDict, JobDict
 from biolib.tables import BioLibTable
-from biolib.typing_utils import Optional, List, cast, Dict
+from biolib.typing_utils import Dict, List, Optional, cast
 from biolib.utils import IS_RUNNING_IN_NOTEBOOK
 
 
@@ -187,6 +187,18 @@ class Job:
             print('Please copy and paste the following link into your browser:')
             print(results_url_to_open)
 
+    def cancel(self) -> None:
+        try:
+            api.client.patch(
+                path=f'/jobs/{self._uuid}/',
+                headers={'Job-Auth-Token': self._auth_token} if self._auth_token else None,
+                data={'state': 'cancelled'},
+            )
+            logger.info(f'Job {self._uuid} canceled')
+        except Exception as error:
+            logger.error(f'Failed to cancel job {self._uuid} due to: {error}')
+
+
     def _get_cloud_job(self) -> CloudJobDict:
         self._refetch_job_dict(force_refetch=True)
         if self._job_dict['cloud_job'] is None:

{pybiolib-1.1.1907.dist-info → pybiolib-1.1.1917.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.1907
+Version: 1.1.1917
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.1907.dist-info → pybiolib-1.1.1917.dist-info}/RECORD

@@ -5,7 +5,7 @@ biolib/_internal/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,
 biolib/_internal/data_record/__init__.py,sha256=1Bk303i3rFet9veS56fIsrBYtT5X3n9vcsYMA6T6c5o,36
 biolib/_internal/data_record/data_record.py,sha256=brvr88Ri1ro-tHZ-_1S19mX5Yt4Tm7q1c5AoUZfpSNY,6990
 biolib/_internal/data_record/remote_storage_endpoint.py,sha256=LPq8Lr5FhKF9_o5K-bUdT7TeLe5XFUD0AAeTkNEVZug,1133
-biolib/_internal/http_client.py,sha256=L1pLe4OJv1YyoZJgRWbUtofBj-aovqJpawCuFFbVYDw,4470
+biolib/_internal/http_client.py,sha256=38PHvRkqdjcOgRXkWU7UoYCQxHMX0eKpuwKhudDupII,4525
 biolib/_internal/push_application.py,sha256=H1PGNtVJ0vRC0li39gFMpPpjm6QeZ8Ob-7cLkLmxS_Y,10009
 biolib/_internal/runtime.py,sha256=un18gmB2wFOXVjKca1Oe6mZI-xGydz8C8seScNvnC2s,2197
 biolib/_internal/utils/__init__.py,sha256=p5vsIFyu-zYqBgdSMfwW9NC_jk7rXvvCbV4Bzd3As7c,630
@@ -85,7 +85,7 @@ biolib/experiments/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuF
 biolib/experiments/experiment.py,sha256=xUd3LkV5ztFIjTx_ehBu8e-flvfuQnYimFtPj1upzb0,5942
 biolib/experiments/types.py,sha256=n9GxdFA7cLMfHvLLqLmZzX31ELeSSkMXFoEEdFsdWGY,171
 biolib/jobs/__init__.py,sha256=aIb2H2DHjQbM2Bs-dysFijhwFcL58Blp0Co0gimED3w,32
-biolib/jobs/job.py,sha256=_lYtqaTrtq3ayDvnaB9RuUMBTxCRKYGKVADUd473pWQ,15718
+biolib/jobs/job.py,sha256=WFcHYYOkvAhmYRUykWFbjhshiF_dy1-eiPIMCS1CIeo,16157
 biolib/jobs/job_result.py,sha256=8GasUmUXD8SjUYrE2N-HrDx7-AI6TEkFONH8H91t01Q,4913
 biolib/jobs/types.py,sha256=4OAvlhOKANzFMrZDd-mhXpEd8RaKcx8sPneZUoWhJ2U,970
 biolib/lfs/__init__.py,sha256=Qv8vdYeK43JecT4SsE93ZYE2VmNiZENdNpW8P9-omxs,115
@@ -105,8 +105,8 @@ biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
 biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.1907.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.1907.dist-info/METADATA,sha256=Y7GVDjw8XNDr0aJmJECOojLgtBZ6UfAvIgOPoXtsr08,1508
-pybiolib-1.1.1907.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.1907.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.1907.dist-info/RECORD,,
+pybiolib-1.1.1917.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.1917.dist-info/METADATA,sha256=CbmBzNSp1CoLuExmlbJMLgszUxT1SxrRYAVpYhWKF9o,1508
+pybiolib-1.1.1917.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.1917.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.1917.dist-info/RECORD,,