pybiolib 1.1.1836__py3-none-any.whl → 1.1.1855__py3-none-any.whl

biolib/_internal/http_client.py

@@ -42,7 +42,7 @@ class HttpError(urllib.error.HTTPError):
 
 
 class HttpResponse:
-    def __init__(self, response):
+    def __init__(self, response) -> None:
         self.headers: Dict[str, str] = dict(response.headers)
         self.status_code: int = int(response.status)
         self.content: bytes = response.read()

biolib/compute_node/job_worker/cache_state.py

@@ -16,7 +16,7 @@ class DockerCacheStateError(CacheStateError):
 
 class LfsCacheState(CacheState):
 
-    def __init__(self):
+    def __init__(self) -> None:
         super().__init__()
 
         self._storage_path_for_write: str = self._get_storage_path_for_write()

biolib/compute_node/job_worker/executors/docker_executor.py

@@ -39,7 +39,7 @@ from biolib.typing_utils import List, Dict, Optional
 
 class DockerExecutor:
 
-    def __init__(self, options: LocalExecutorOptions):
+    def __init__(self, options: LocalExecutorOptions) -> None:
         self._options: LocalExecutorOptions = options
         self._is_cleaning_up = False
 

biolib/utils/cache_state.py

@@ -37,7 +37,7 @@ class CacheState(abc.ABC, Generic[StateType]):
     def _state_lock_path(self) -> str:
         return f'{self._state_path}.lock'
 
-    def __init__(self):
+    def __init__(self) -> None:
         self._state: Optional[StateType] = None
 
     def __enter__(self) -> StateType:

biolib/utils/seq_util.py

@@ -3,16 +3,21 @@ from io import BufferedIOBase
 from biolib.typing_utils import List, Optional, Dict, Union
 
 allowed_sequence_chars = set("ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789-_.")
+
+
 def find_invalid_sequence_characters(sequence):
     invalid_chars = [char for char in sequence if char not in allowed_sequence_chars]
     return invalid_chars
 
+
 class SeqUtilRecord:
-    def __init__(self,
-                 sequence: str,
-                 sequence_id: str,
-                 description: Optional['str'],
-                 properties: Optional[Dict[str, str]] = None):
+    def __init__(
+            self,
+            sequence: str,
+            sequence_id: str,
+            description: Optional['str'],
+            properties: Optional[Dict[str, str]] = None,
+    ):
         self.sequence = sequence
         self.id = sequence_id  # pylint: disable=invalid-name
         self.description = description
@@ -33,11 +38,11 @@ class SeqUtilRecord:
 class SeqUtil:
     @staticmethod
     def parse_fasta(
-        input_file: Union[str, BufferedIOBase] = None,
-        default_header: Optional[str] = None,
-        allow_any_sequence_characters: bool = False,
-        allow_empty_sequence: bool = False,
-        file_name: Optional[str] = None,
+            input_file: Union[str, BufferedIOBase, None] = None,
+            default_header: Optional[str] = None,
+            allow_any_sequence_characters: bool = False,
+            allow_empty_sequence: bool = False,
+            file_name: Optional[str] = None,
     ) -> List[SeqUtilRecord]:
         if input_file is None:
             if file_name:

{pybiolib-1.1.1836.dist-info → pybiolib-1.1.1855.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pybiolib
-Version: 1.1.1836
+Version: 1.1.1855
 Summary: BioLib Python Client
 Home-page: https://github.com/biolib
 License: MIT

{pybiolib-1.1.1836.dist-info → pybiolib-1.1.1855.dist-info}/RECORD

@@ -4,7 +4,7 @@ biolib/__init__.py,sha256=nfZvVkrHZLvjvvlAvFzhvem9NMfqgmw8NWaCH9HGzew,4045
 biolib/_internal/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/_internal/data_record/__init__.py,sha256=1Bk303i3rFet9veS56fIsrBYtT5X3n9vcsYMA6T6c5o,36
 biolib/_internal/data_record/data_record.py,sha256=vUCQ8d0BPa7c6zrGT49YTFmSkkZgmE6s7bJ2xYl1RKc,4728
-biolib/_internal/http_client.py,sha256=ltwX4FMhy9i0gjeb3xydb_OkdZuzr5wIfMq1-K-rp6o,4110
+biolib/_internal/http_client.py,sha256=u_9xnHqgdiaChCs84l2heZ6v3l92dT7mEr5-G6TjIs0,4118
 biolib/_internal/push_application.py,sha256=NXQNLPucqkq7eKbNCJQA8OYx4CXYHRJ1CG1ViPAJJH4,10680
 biolib/_internal/runtime.py,sha256=xXIz3Upki-6DeCp4pRJCywBYJcoY0AmZKpzZER7Vh5U,2206
 biolib/_internal/utils/__init__.py,sha256=b3LqrlHn71AIe6pHUMFRCjaoqW9r0sJtrQIEPlTCtog,630
@@ -55,11 +55,11 @@ biolib/compute_node/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSu
 biolib/compute_node/cloud_utils/__init__.py,sha256=VZSScLqaz5tg_gpMvWgwkAu9Qf-vgW_QHRoDOaAmU44,67
 biolib/compute_node/cloud_utils/cloud_utils.py,sha256=KIZjBnZPBtHParrR_KnRl7N343sHXMQugH9lkwAwTFk,7621
 biolib/compute_node/job_worker/__init__.py,sha256=ipdPWaABKYrltxny15e2kK8PWdEE7VzXbkKK6wM_zDk,71
-biolib/compute_node/job_worker/cache_state.py,sha256=N2AxvvgfizKx9P_ysM0GDCmueMUlgcveA4xSdz_Z2IQ,4822
+biolib/compute_node/job_worker/cache_state.py,sha256=MwjSRzcJJ_4jybqvBL4xdgnDYSIiw4s90pNn83Netoo,4830
 biolib/compute_node/job_worker/cache_types.py,sha256=ajpLy8i09QeQS9dEqTn3T6NVNMY_YsHQkSD5nvIHccQ,818
 biolib/compute_node/job_worker/docker_image_cache.py,sha256=ansHIkJIq_EMW1nZNlW-RRLVVeKWTbzNICYaOHpKiRE,7460
 biolib/compute_node/job_worker/executors/__init__.py,sha256=bW6t1qi3PZTlHM4quaTLa8EI4ALTCk83cqcVJfJfJfE,145
-biolib/compute_node/job_worker/executors/docker_executor.py,sha256=xdJppt2ON7owtRvyMWOZZNCHY4QaaaA-AUgv5EMcL9w,26411
+biolib/compute_node/job_worker/executors/docker_executor.py,sha256=ezXRhVBW5dYpLJjM2m5Qf-I6PrrNeBdEYjApjo7XVso,26419
 biolib/compute_node/job_worker/executors/docker_types.py,sha256=VhsU1DKtJjx_BbCkVmiPZPH4ROiL1ygW1Y_s1Kbpa2o,216
 biolib/compute_node/job_worker/executors/tars/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biolib/compute_node/job_worker/executors/types.py,sha256=yP5gG39hr-DLnw9bOE--VHi-1arDbIYiGuV1rlTbbHI,1466
@@ -101,12 +101,12 @@ biolib/user/__init__.py,sha256=Db5wtxLfFz3ID9TULSSTo77csw9tO6RtxMRvV5cqKEE,39
 biolib/user/sign_in.py,sha256=q-E2B3wLVwPU5plbITJXP4GDWWUzUcDpYu_y8BShNQ8,2039
 biolib/utils/__init__.py,sha256=fwjciJyJicvYyZcVTzfDBgD0SKY13DeXqvTeG4qZIy8,5548
 biolib/utils/app_uri.py,sha256=Yq_-_VGugQhMMo6mM5f0G9yNlLkr0WK4j0Nrf3FE4xQ,2171
-biolib/utils/cache_state.py,sha256=GaGPxQ1GfrBL6Mzo_HJPpmZCd_CbUDN_l_C5frQ5Sfs,3092
+biolib/utils/cache_state.py,sha256=u256F37QSRIVwqKlbnCyzAX4EMI-kl6Dwu6qwj-Qmag,3100
 biolib/utils/multipart_uploader.py,sha256=XvGP1I8tQuKhAH-QugPRoEsCi9qvbRk-DVBs5PNwwJo,8452
-biolib/utils/seq_util.py,sha256=3BGUppEaR8asFBxktHCrIW0cMmF23b06PsbDQOoeCDQ,4879
+biolib/utils/seq_util.py,sha256=jC5WhH63FTD7SLFJbxQGA2hOt9NTwq9zHl_BEec1Z0c,4907
 biolib/utils/zip/remote_zip.py,sha256=0wErYlxir5921agfFeV1xVjf29l9VNgGQvNlWOlj2Yc,23232
-pybiolib-1.1.1836.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
-pybiolib-1.1.1836.dist-info/METADATA,sha256=9L5BP33bKqEJGc_j8IR4f6U9k7pD2eNv7tDc6PHZoR4,1508
-pybiolib-1.1.1836.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-pybiolib-1.1.1836.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
-pybiolib-1.1.1836.dist-info/RECORD,,
+pybiolib-1.1.1855.dist-info/LICENSE,sha256=F2h7gf8i0agDIeWoBPXDMYScvQOz02pAWkKhTGOHaaw,1067
+pybiolib-1.1.1855.dist-info/METADATA,sha256=btP7HkwsrexJyQvuJJUzypZGZQmpSOqcjAC6cwXSqYU,1508
+pybiolib-1.1.1855.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+pybiolib-1.1.1855.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
+pybiolib-1.1.1855.dist-info/RECORD,,