pybiolib 1.1.1747__py3-none-any.whl → 1.1.2193__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (75) hide show
  1. biolib/__init__.py +18 -5
  2. biolib/_data_record/data_record.py +278 -0
  3. biolib/_internal/data_record/__init__.py +1 -0
  4. biolib/_internal/data_record/data_record.py +97 -0
  5. biolib/_internal/data_record/remote_storage_endpoint.py +38 -0
  6. biolib/_internal/file_utils.py +77 -0
  7. biolib/_internal/fuse_mount/__init__.py +1 -0
  8. biolib/_internal/fuse_mount/experiment_fuse_mount.py +209 -0
  9. biolib/_internal/http_client.py +42 -23
  10. biolib/_internal/lfs/__init__.py +1 -0
  11. biolib/_internal/libs/__init__.py +1 -0
  12. biolib/_internal/libs/fusepy/__init__.py +1257 -0
  13. biolib/_internal/push_application.py +22 -37
  14. biolib/_internal/runtime.py +19 -0
  15. biolib/_internal/types/__init__.py +4 -0
  16. biolib/_internal/types/app.py +9 -0
  17. biolib/_internal/types/data_record.py +40 -0
  18. biolib/_internal/types/experiment.py +10 -0
  19. biolib/_internal/types/resource.py +14 -0
  20. biolib/_internal/types/typing.py +7 -0
  21. biolib/_internal/utils/__init__.py +18 -0
  22. biolib/_runtime/runtime.py +80 -0
  23. biolib/api/__init__.py +1 -0
  24. biolib/api/client.py +39 -17
  25. biolib/app/app.py +40 -72
  26. biolib/app/search_apps.py +8 -12
  27. biolib/biolib_api_client/api_client.py +22 -10
  28. biolib/biolib_api_client/app_types.py +2 -1
  29. biolib/biolib_api_client/biolib_app_api.py +1 -1
  30. biolib/biolib_api_client/biolib_job_api.py +6 -0
  31. biolib/biolib_api_client/job_types.py +4 -4
  32. biolib/biolib_api_client/lfs_types.py +8 -2
  33. biolib/biolib_binary_format/remote_endpoints.py +12 -10
  34. biolib/biolib_binary_format/utils.py +41 -4
  35. biolib/cli/__init__.py +6 -2
  36. biolib/cli/auth.py +58 -0
  37. biolib/cli/data_record.py +80 -0
  38. biolib/cli/download_container.py +3 -1
  39. biolib/cli/init.py +1 -0
  40. biolib/cli/lfs.py +45 -11
  41. biolib/cli/push.py +1 -1
  42. biolib/cli/run.py +3 -2
  43. biolib/cli/start.py +1 -0
  44. biolib/compute_node/cloud_utils/cloud_utils.py +15 -18
  45. biolib/compute_node/job_worker/cache_state.py +1 -1
  46. biolib/compute_node/job_worker/executors/docker_executor.py +134 -114
  47. biolib/compute_node/job_worker/job_storage.py +3 -4
  48. biolib/compute_node/job_worker/job_worker.py +31 -15
  49. biolib/compute_node/remote_host_proxy.py +75 -70
  50. biolib/compute_node/webserver/webserver_types.py +0 -1
  51. biolib/experiments/experiment.py +75 -44
  52. biolib/jobs/job.py +125 -47
  53. biolib/jobs/job_result.py +46 -21
  54. biolib/jobs/types.py +1 -1
  55. biolib/runtime/__init__.py +14 -1
  56. biolib/sdk/__init__.py +29 -5
  57. biolib/typing_utils.py +2 -7
  58. biolib/user/sign_in.py +10 -14
  59. biolib/utils/__init__.py +1 -1
  60. biolib/utils/app_uri.py +11 -4
  61. biolib/utils/cache_state.py +2 -2
  62. biolib/utils/seq_util.py +38 -30
  63. {pybiolib-1.1.1747.dist-info → pybiolib-1.1.2193.dist-info}/METADATA +1 -1
  64. pybiolib-1.1.2193.dist-info/RECORD +123 -0
  65. {pybiolib-1.1.1747.dist-info → pybiolib-1.1.2193.dist-info}/WHEEL +1 -1
  66. biolib/biolib_api_client/biolib_account_api.py +0 -8
  67. biolib/biolib_api_client/biolib_large_file_system_api.py +0 -34
  68. biolib/experiments/types.py +0 -9
  69. biolib/lfs/__init__.py +0 -6
  70. biolib/lfs/utils.py +0 -237
  71. biolib/runtime/results.py +0 -20
  72. pybiolib-1.1.1747.dist-info/RECORD +0 -108
  73. /biolib/{lfs → _internal/lfs}/cache.py +0 -0
  74. {pybiolib-1.1.1747.dist-info → pybiolib-1.1.2193.dist-info}/LICENSE +0 -0
  75. {pybiolib-1.1.1747.dist-info → pybiolib-1.1.2193.dist-info}/entry_points.txt +0 -0
pybiolib-1.1.1747.dist-info/RECORD DELETED
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- pybiolib-1.1.1747.dist-info/entry_points.txt,sha256=p6DyaP_2kctxegTX23WBznnrDi4mz6gx04O5uKtRDXg,42
108
- pybiolib-1.1.1747.dist-info/RECORD,,
/biolib/{lfs → _internal/lfs}/cache.py RENAMED
File without changes