pyaragorn 0.1.0__pp310-pypy310_pp73-macosx_10_15_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of pyaragorn might be problematic. Click here for more details.
- pyaragorn/CMakeLists.txt +1 -0
- pyaragorn/__init__.py +36 -0
- pyaragorn/lib.pypy310-pp73-darwin.so +0 -0
- pyaragorn/lib.pyx +715 -0
- pyaragorn/tests/__init__.py +10 -0
- pyaragorn/tests/data/CP001621.default.txt +95 -0
- pyaragorn/tests/data/CP001621.fna.gz +0 -0
- pyaragorn/tests/data/__init__.py +30 -0
- pyaragorn/tests/fasta.py +86 -0
- pyaragorn/tests/requirements.txt +1 -0
- pyaragorn/tests/test_doctest.py +93 -0
- pyaragorn/tests/test_rna_finder.py +69 -0
- pyaragorn-0.1.0.dist-info/METADATA +885 -0
- pyaragorn-0.1.0.dist-info/RECORD +16 -0
- pyaragorn-0.1.0.dist-info/WHEEL +5 -0
- pyaragorn-0.1.0.dist-info/licenses/COPYING +674 -0
pyaragorn/CMakeLists.txt
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
cython_extension(lib LINKS aragorn)
|
pyaragorn/__init__.py
ADDED
|
@@ -0,0 +1,36 @@
|
|
|
1
|
+
from . import lib
|
|
2
|
+
from .lib import (
|
|
3
|
+
__version__,
|
|
4
|
+
Gene,
|
|
5
|
+
TRNAGene,
|
|
6
|
+
TMRNAGene,
|
|
7
|
+
RNAFinder,
|
|
8
|
+
ARAGORN_VERSION,
|
|
9
|
+
TRANSLATION_TABLES,
|
|
10
|
+
)
|
|
11
|
+
|
|
12
|
+
__doc__ = lib.__doc__
|
|
13
|
+
__all__ = [
|
|
14
|
+
"Gene",
|
|
15
|
+
"TRNAGene",
|
|
16
|
+
"TMRNAGene",
|
|
17
|
+
"RNAFinder",
|
|
18
|
+
"ARAGORN_VERSION",
|
|
19
|
+
"TRANSLATION_TABLES",
|
|
20
|
+
]
|
|
21
|
+
|
|
22
|
+
__author__ = "Martin Larralde <martin.larralde@embl.de>"
|
|
23
|
+
__license__ = "GPL-3.0-or-later"
|
|
24
|
+
|
|
25
|
+
# Small addition to the docstring: we want to show a link redirecting to the
|
|
26
|
+
# rendered version of the documentation, but this can only work when Python
|
|
27
|
+
# is running with docstrings enabled
|
|
28
|
+
if __doc__ is not None:
|
|
29
|
+
__doc__ += """See Also:
|
|
30
|
+
An online rendered version of the documentation for this version
|
|
31
|
+
of the library on
|
|
32
|
+
`Read The Docs <https://pyaragorn.readthedocs.io/en/v{}/>`_.
|
|
33
|
+
|
|
34
|
+
""".format(
|
|
35
|
+
__version__
|
|
36
|
+
)
|
|
Binary file
|