pyafv 0.3.5__cp312-cp312-win_amd64.whl → 0.4.1__cp312-cp312-win_amd64.whl

pyafv-0.4.1.dist-info/RECORD

@@ -0,0 +1,19 @@
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+pyafv-0.4.1.dist-info/RECORD,,

{pyafv-0.3.5.dist-info → pyafv-0.4.1.dist-info}/WHEEL

@@ -1,5 +1,4 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.9.0)
+Generator: hatchling 1.28.0
 Root-Is-Purelib: false
 Tag: cp312-cp312-win_amd64
-

pyafv-0.3.5.dist-info/METADATA

@@ -1,117 +0,0 @@
-Metadata-Version: 2.4
-Name: pyafv
-Version: 0.3.5
-Summary: Python implementation of the active-finite-Voronoi (AFV) model
-Author-email: "Wei Wang (汪巍)" <ww000721@gmail.com>
-License-Expression: MIT
-Project-URL: Download, https://pypi.org/project/pyafv/#files
-Project-URL: Source Code, https://github.com/wwang721/pyafv
-Project-URL: Documentation, https://pyafv.readthedocs.io/
-Project-URL: Changelog, https://github.com/wwang721/pyafv/releases/latest
-Keywords: voronoi-model,cellular-patterns,biological-modeling
-Classifier: Development Status :: 4 - Beta
-Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Science/Research
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: 3.13
-Classifier: Programming Language :: Python :: 3.14
-Classifier: Operating System :: OS Independent
-Classifier: Topic :: Scientific/Engineering
-Requires-Python: <3.15,>=3.10
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: numpy>=1.26.4
-Requires-Dist: scipy>=1.13.1
-Requires-Dist: matplotlib>=3.8.4
-Provides-Extra: examples
-Requires-Dist: ipywidgets>=8.1.5; extra == "examples"
-Requires-Dist: jupyter>=1.1.0; extra == "examples"
-Requires-Dist: tqdm>=4.67.1; extra == "examples"
-Dynamic: license-file
-
-[![PyPi](https://img.shields.io/pypi/v/pyafv)](https://pypi.org/project/pyafv/)
-[![Downloads](https://img.shields.io/pypi/dm/pyafv.svg)](https://pypi.org/project/pyafv/)
-[![Zenodo](https://zenodo.org/badge/1124385738.svg)](https://doi.org/10.5281/zenodo.18091659)
-<!--[![pytest](https://github.com/wwang721/pyafv/actions/workflows/tests.yml/badge.svg?branch=main)](https://github.com/wwang721/pyafv/actions/workflows/tests.yml?query=branch:main)-->
-[![pytest](https://github.com/wwang721/pyafv/actions/workflows/tests.yml/badge.svg)](https://github.com/wwang721/pyafv/actions/workflows/tests.yml)
-[![codecov](https://codecov.io/github/wwang721/pyafv/branch/main/graph/badge.svg?token=VSXSOX8HVS)](https://codecov.io/github/wwang721/pyafv/tree/main)
-[![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT)
-
-
-# PyAFV
-
-Python code that implements the **active-finite-Voronoi (AFV) model** in 2D.
-The AFV framework was introduced and developed in, for example, Refs. [[1](#huang2023bridging)&ndash;[3](#wang2026divergence)].
-
-
-## Installation
-
-To install **PyAFV** with `pip`, run:
-```bash
-pip install pyafv
-```
-The package supports Python ≥ 3.10 and < 3.15.
-To verify that the installation was successful and that the correct version is installed, run the following in Python:
-```python
-import pyafv
-print(pyafv.__version__)
-```
-
-
-## Usage
-
-<!--Using `uv run python`, you should be able to import `pyafv` from anywhere within the repository directory.-->
-The following example demonstrates how to construct a finite-Voronoi diagram:
-```python
-import numpy as np
-import pyafv as afv
-
-N = 100                                          # number of cells
-pts = np.random.rand(N, 2) * 10                  # initial positions
-params = afv.PhysicalParams()                    # use default parameter values
-sim = afv.FiniteVoronoiSimulator(pts, params)    # initialize the simulator
-sim.plot_2d(show=True)                           # visualize the Voronoi diagram
-```
-To compute the conservative forces and extract detailed geometric information (e.g., cell areas, vertices, and edges), call:
-```python
-diag = sim.build()
-```
-The returned object `diag` is a Python `dict` containing these quantities.
-
-
-## More information
-
-GitHub: [https://github.com/wwang721/pyafv](https://github.com/wwang721/pyafv)
-
-See important [**issues**](https://github.com/wwang721/pyafv/issues?q=is%3Aissue%20state%3Aclosed) for additional context, such as: 
-* [QhullError when 3+ points are collinear #1](https://github.com/wwang721/pyafv/issues/1) [Closed - see [comments](https://github.com/wwang721/pyafv/issues/1#issuecomment-3701355742)]
-*  [Add customized plotting to examples illustrating access to vertices and edges #5](https://github.com/wwang721/pyafv/issues/5) [Completed in PR [#7](https://github.com/wwang721/pyafv/pull/7)]
-* [Time step dependence of intercellular adhesion in simulations #8](https://github.com/wwang721/pyafv/issues/8) [Closed in PR [#9](https://github.com/wwang721/pyafv/pull/9)]
-
-Full documentation on [readthedocs](https://pyafv.readthedocs.io/en/latest/)!
-
-## References
-
-<table>
-  <tr>
-    <td id="huang2023bridging" valign="top">[1]</td>
-    <td>
-      J. Huang, H. Levine, and D. Bi, <em>Bridging the gap between collective motility and epithelial-mesenchymal transitions through the active finite Voronoi model</em>, <a href="https://doi.org/10.1039/D3SM00327B">Soft Matter <strong>19</strong>, 9389 (2023)</a>.
-    </td>
-  </tr>
-  <tr>
-    <td id="teomy2018confluent" valign="top">[2]</td>
-    <td>
-      E. Teomy, D. A. Kessler, and H. Levine, <em>Confluent and nonconfluent phases in a model of cell tissue</em>, <a href="https://doi.org/10.1103/PhysRevE.98.042418">Phys. Rev. E <strong>98</strong>, 042418 (2018)</a>.
-    </td>
-  </tr>
-  <tr>
-    <td id="wang2026divergence" valign="top">[3]</td>
-    <td>
-      W. Wang (汪巍) and B. A. Camley, <em>Divergence of detachment forces in the finite-Voronoi model</em>, manuscript in preparation (2026).
-    </td>
-  </tr>
-</table>

pyafv-0.3.5.dist-info/RECORD

@@ -1,12 +0,0 @@
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-pyafv-0.3.5.dist-info/RECORD,,

pyafv-0.3.5.dist-info/top_level.txt

@@ -1 +0,0 @@
-pyafv