pyadps 0.1.0b0__py3-none-any.whl → 0.1.2__py3-none-any.whl

pyadps/pages/08_Write_File.py

@@ -0,0 +1,606 @@
+import configparser
+import tempfile
+
+import numpy as np
+import pandas as pd
+import plotly.graph_objects as go
+import streamlit as st
+import utils.writenc as wr
+from plotly_resampler import FigureResampler
+
+if "flead" not in st.session_state:
+    st.write(":red[Please Select Data!]")
+    st.stop()
+
+if "fname" not in st.session_state:
+    st.session_state.fname = "No file selected"
+
+if "rawfilename" not in st.session_state:
+    st.session_state.rawfilename = "RAW_DAT.nc"
+
+if "vleadfilename" not in st.session_state:
+    st.session_state.vleadfilename = "RAW_VAR.nc"
+
+if "file_prefix" not in st.session_state:
+    raw_basename = os.path.basename(st.session_state.fname)
+    st.session_state.filename = os.path.splitext(raw_basename)[0] 
+    st.session_state.file_prefix = st.session_state.filename
+
+
+if "prefix_saved" not in st.session_state:
+    st.session_state.prefix_saved = False
+
+if "filename" not in st.session_state:
+    st.session_state.filename = ""  # <-- Default file name if not passed
+
+
+
+# Check if attributes exist in session state
+if "attributes" not in st.session_state:
+    st.session_state.attributes = {}
+    st.session_state.isAttributes = False
+
+if st.session_state.isVelocityTest:
+    st.session_state.final_mask = st.session_state.velocity_mask
+
+    if st.session_state.isVelocityModifiedMagnet:
+        st.session_state.final_velocity = st.session_state.velocity_magnet
+    if st.session_state.isRegridCheck_PT:
+        st.session_state.final_velocity = st.session_state.velocity_regrid
+    elif st.session_state.isVelocityModifiedSound_ST:
+        st.session_state.final_velocity = st.session_state.velocity_sensor
+    else:
+        st.session_state.final_velocity = st.session_state.velocity
+
+    if st.session_state.isRegridCheck_PT:
+        st.session_state.final_echo = st.session_state.echo_regrid
+        st.session_state.final_correlation = st.session_state.correlation_regrid
+        st.session_state.final_pgood = st.session_state.pgood_regrid
+    else:
+        st.session_state.final_echo = st.session_state.echo
+        st.session_state.final_correlation = st.session_state.correlation
+        st.session_state.final_pgood = st.session_state.pgood
+else:
+    if st.session_state.isRegridCheck_PT:
+        st.session_state.final_mask = st.session_state.profile_mask_regrid
+        st.session_state.final_velocity = st.session_state.velocity_regrid
+        st.session_state.final_echo = st.session_state.echo_regrid
+        st.session_state.final_correlation = st.session_state.correlation_regrid
+        st.session_state.final_pgood = st.session_state.pgood_regrid
+    else:
+        if st.session_state.isProfileTest:
+            st.session_state.final_mask = st.session_state.profile_mask
+        elif st.session_state.isQCTest:
+            st.session_state.final_mask = st.session_state.qc_mask
+        elif st.session_state.isSensorTest:
+            st.session_state.final_mask = st.session_state.sensor_mask
+        else:
+            st.session_state.final_mask = st.session_state.orig_mask
+        st.session_state.final_velocity = st.session_state.velocity
+        st.session_state.final_echo = st.session_state.echo
+        st.session_state.final_correlation = st.session_state.correlation
+        st.session_state.final_pgood = st.session_state.pgood
+
+
+if "depth_axis" not in st.session_state:
+    st.session_state.isRegridCheck_PT = False
+
+@st.cache_data
+def get_prefixed_filename(base_name):
+    """Generates the file name with the optional prefix."""
+    if st.session_state.file_prefix:
+        return f"{st.session_state.file_prefix}_{base_name}"
+    return base_name
+
+@st.cache_data
+def file_write(filename=get_prefixed_filename("PRO_DAT.nc")):
+    tempdirname = tempfile.TemporaryDirectory(delete=False)
+    outfilepath = tempdirname.name + "/" + filename
+    return outfilepath
+
+
+# If the data is not regrided based on pressure sensor. Use the mean depth
+if not st.session_state.isRegridCheck_PT:
+    st.write(":red[WARNING!]")
+    st.write(
+        "Data not regrided. Using the mean transducer depth to calculate the depth axis."
+    )
+    # mean_depth = np.mean(st.session_state.vlead.vleader["Depth of Transducer"]) / 10
+    mean_depth = np.mean(st.session_state.depth) / 10
+    mean_depth = np.trunc(mean_depth)
+    st.write(f"Mean depth of the transducer is `{mean_depth}`")
+    cells = st.session_state.flead.field()["Cells"]
+    cell_size = st.session_state.flead.field()["Depth Cell Len"] / 100
+    bin1dist = st.session_state.flead.field()["Bin 1 Dist"] / 100
+    if st.session_state.beam_direction_QCT.lower() == "up":
+        sgn = -1
+    else:
+        sgn = 1
+    first_depth = mean_depth + sgn * bin1dist
+    last_depth = first_depth + sgn * cells * cell_size
+    z = np.arange(first_depth, last_depth, sgn * cell_size)
+    st.session_state.final_depth_axis = z
+else:
+    st.session_state.final_depth_axis = st.session_state.depth_axis
+
+
+# Functions for plotting
+@st.cache_data
+def fillplot_plotly(
+    x, y, data, maskdata, colorscale="balance", title="Data", mask=False
+):
+    fig = FigureResampler(go.Figure())
+    if mask:
+        data1 = np.where(maskdata == 1, np.nan, data)
+    else:
+        data1 = np.where(data == -32768, np.nan, data)
+
+    fig.add_trace(
+        go.Heatmap(
+            z=data1[:, 0:-1],
+            x=x,
+            y=y,
+            colorscale=colorscale,
+            hoverongaps=False,
+        )
+    )
+    fig.update_layout(
+        xaxis=dict(showline=True, mirror=True),
+        yaxis=dict(showline=True, mirror=True),
+        title_text=title,
+    )
+    fig.update_yaxes(autorange="reversed")
+    st.plotly_chart(fig)
+
+
+def call_plot(varname, beam, mask=False):
+    if varname == "Velocity":
+        fillplot_plotly(
+            st.session_state.date,
+            st.session_state.final_depth_axis,
+            st.session_state.final_velocity[beam - 1, :, :],
+            st.session_state.final_mask,
+            title=varname,
+            mask=mask,
+        )
+    elif varname == "Echo":
+        fillplot_plotly(
+            st.session_state.date,
+            st.session_state.final_depth_axis,
+            st.session_state.final_echo[beam - 1, :, :],
+            st.session_state.final_mask,
+            title=varname,
+            mask=mask,
+        )
+    elif varname == "Correlation":
+        fillplot_plotly(
+            st.session_state.date,
+            st.session_state.final_depth_axis,
+            st.session_state.final_correlation[beam - 1, :, :],
+            st.session_state.final_mask,
+            title=varname,
+            mask=mask,
+        )
+    elif varname == "Percent Good":
+        fillplot_plotly(
+            st.session_state.date,
+            st.session_state.final_depth_axis,
+            st.session_state.final_pgood[beam - 1, :, :],
+            st.session_state.final_mask,
+            title=varname,
+            mask=mask,
+        )
+
+
+# Option to View Processed Data
+st.header("View Processed Data", divider="blue")
+var_option = st.selectbox(
+    "Select a data type", ("Velocity", "Echo", "Correlation", "Percent Good")
+)
+beam = st.radio("Select beam", (1, 2, 3, 4), horizontal=True)
+
+mask_radio = st.radio("Apply Mask", ("Yes", "No"), horizontal=True)
+plot_button = st.button("Plot Processed Data")
+if plot_button:
+    if mask_radio == "Yes":
+        call_plot(var_option, beam, mask=True)
+    elif mask_radio == "No":
+        call_plot(var_option, beam, mask=False)
+
+
+# Option to Write Processed Data
+st.header("Write Data", divider="blue")
+
+st.session_state.mask_data_WF = st.radio(
+    "Do you want to mask the final data?", ("Yes", "No")
+)
+
+if st.session_state.mask_data_WF == "Yes":
+    mask = st.session_state.final_mask
+    st.session_state.write_velocity = np.copy(st.session_state.final_velocity).astype(np.int16)
+    st.session_state.write_velocity[:, mask == 1] = -32768
+    
+else:
+    st.session_state.write_velocity = np.copy(st.session_state.final_velocity)
+
+st.session_state.file_type_WF = st.radio(
+    "Select output file format:", ("NetCDF", "CSV")
+)
+
+if st.session_state.file_type_WF == "NetCDF":
+    add_attr_button = st.checkbox("Add attributes to NetCDF file")
+
+    if add_attr_button:
+        st.session_state.isAttributes = True
+        st.write("### Modify Attributes")
+
+        # Create two-column layout for attributes
+        col1, col2 = st.columns(2)
+
+        with col1:
+            # Display attributes in the first column
+            for key in [
+                "Cruise_No.",
+                "Ship_Name",
+                "Project_No.",
+                "Water_Depth_m",
+                "Deployment_Depth_m",
+                "Deployment_Date",
+                "Recovery_Date",
+            ]:
+                if key in st.session_state.attributes:
+                    st.session_state.attributes[key] = st.text_input(
+                        key, value=st.session_state.attributes[key]
+                    )
+                else:
+                    st.session_state.attributes[key] = st.text_input(key)
+
+        with col2:
+            # Display attributes in the second column
+            for key in [
+                "Latitude",
+                "Longitude",
+                "Platform_Type",
+                "Participants",
+                "File_created_by",
+                "Contact",
+                "Comments",
+            ]:
+                if key in st.session_state.attributes:
+                    st.session_state.attributes[key] = st.text_input(
+                        key, value=st.session_state.attributes[key]
+                    )
+                else:
+                    st.session_state.attributes[key] = st.text_input(key)
+
+download_button = st.button("Generate Processed files")
+
+if download_button:
+    st.session_state.processed_filename = file_write()
+    st.write(":grey[Processed file created. Click the download button.]")
+    #    st.write(st.session_state.processed_filename)
+    depth_axis = np.trunc(st.session_state.final_depth_axis)
+    final_mask = st.session_state.final_mask
+    st.session_state.write_echo = np.copy(st.session_state.final_echo)
+    st.session_state.write_correlation = np.copy(st.session_state.final_correlation)
+    st.session_state.write_pgood = np.copy(st.session_state.final_pgood)
+
+    if st.session_state.file_type_WF == "NetCDF":
+        if add_attr_button and st.session_state.attributes:
+            # Generate file with attributes
+            wr.finalnc(
+                st.session_state.processed_filename,
+                depth_axis,
+                final_mask,
+                st.session_state.write_echo,
+                st.session_state.write_correlation,
+                st.session_state.write_pgood,
+                st.session_state.date,
+                st.session_state.write_velocity,
+                attributes=st.session_state.attributes,  # Pass edited attributes
+            )
+        else:
+            # Generate file without attributes
+            wr.finalnc(
+                st.session_state.processed_filename,
+                depth_axis,
+                final_mask,
+                st.session_state.write_echo,
+                st.session_state.write_correlation,
+                st.session_state.write_pgood,
+                st.session_state.date,
+                st.session_state.write_velocity,
+            )
+
+        with open(st.session_state.processed_filename, "rb") as file:
+            st.download_button(
+                label="Download NetCDF File",
+                data=file,
+                file_name=get_prefixed_filename("PRO_DAT.nc"),
+            )
+
+    if st.session_state.file_type_WF == "CSV":
+        udf = pd.DataFrame(
+            st.session_state.write_velocity[0, :, :].T,
+            index=st.session_state.date,
+            columns=-1 * depth_axis,
+        )
+        vdf = pd.DataFrame(
+            st.session_state.write_velocity[1, :, :].T,
+            index=st.session_state.date,
+            columns=-1 * depth_axis,
+        )
+        wdf = pd.DataFrame(
+            st.session_state.write_velocity[2, :, :].T,
+            index=st.session_state.date,
+            columns=-1 * depth_axis,
+        )
+        ucsv = udf.to_csv().encode("utf-8")
+        vcsv = vdf.to_csv().encode("utf-8")
+        wcsv = wdf.to_csv().encode("utf-8")
+        csv_mask = pd.DataFrame(st.session_state.final_mask.T).to_csv().encode("utf-8")
+        st.download_button(
+            label="Download Zonal Velocity File (CSV)",
+            data=ucsv,
+            file_name="zonal_velocity.csv",
+            mime="text/csf",
+        )
+        st.download_button(
+            label="Download Meridional Velocity File (CSV)",
+            data=vcsv,
+            file_name="meridional_velocity.csv",
+            mime="text/csf",
+        )
+        st.download_button(
+            label="Download Vertical Velocity File (CSV)",
+            data=vcsv,
+            file_name="vertical_velocity.csv",
+            mime="text/csf",
+        )
+
+        st.download_button(
+            label="Download Final Mask (CSV)",
+            data=csv_mask,
+            file_name="final_mask.csv",
+            mime="text/csv",
+        )
+
+
+# Option to Download Config file
+# ------------------------------
+
+# Header for the Config.ini File Generator
+st.header("Config.ini File Generator", divider="blue")
+
+# Radio button to decide whether to generate the config.ini file
+generate_config_radio = st.radio(
+    "Do you want to generate a config.ini file?", ("No", "Yes")
+)
+
+
+if generate_config_radio == "Yes":
+    # Create a config parser object
+    config = configparser.ConfigParser()
+
+    # Main section
+    config["FileSettings"] = {}
+    config["DownloadOptions"] = {}
+    config["SensorTest"] = {"sensor_test": "False"}
+    config["QCTest"] = {"qc_test": "False"}
+    config["ProfileTest"] = {"profile_test": "False"}
+    config["VelocityTest"] = {"velocity_test": "False"}
+    config["Attributes"] = {}
+
+    # ------------------
+    # File Settings
+    # ------------------
+    config["FileSettings"]["input_file_path"] = ""
+    config["FileSettings"]["input_file_name"] = st.session_state.fname
+    config["FileSettings"]["output_file_path"] = ""
+    config["FileSettings"]["output_file_name_raw_netcdf"] = ""
+    config["FileSettings"]["output_file_name_flead_netcdf"] = ""
+    config["FileSettings"]["output_file_name_vlead_netcdf"] = ""
+    config["FileSettings"]["output_file_name_raw_csv"] = ""
+    config["FileSettings"]["output_file_name_processed_netcdf"] = ""
+    config["FileSettings"]["output_file_name_processed_csv"] = ""
+
+    if st.session_state.file_type_WF.lower() == "netcdf":
+        st.session_state.isProcessedNetcdfDownload_WF = True
+    else:
+        st.session_state.isProcessedNetcdfDownload_WF = False
+        st.session_state.isProcessedCSVDownload_WF = True
+    # ------------------
+    # Download options
+    # ------------------
+    config["DownloadOptions"]["download_raw_netcdf"] = str(
+        st.session_state.rawnc_download_DRW
+    )
+    config["DownloadOptions"]["download_flead_netcdf"] = str(
+        st.session_state.fleadnc_download_DRW
+    )
+    config["DownloadOptions"]["download_vlead_netcdf"] = str(
+        st.session_state.vleadnc_download_DRW
+    )
+    config["DownloadOptions"]["download_processed_netcdf"] = str(
+        st.session_state.isProcessedNetcdfDownload_WF
+    )
+    config["DownloadOptions"]["download_raw_csv"] = str(
+        st.session_state.rawcsv_download_DRW
+    )
+    config["DownloadOptions"]["download_processed_csv"] = str(
+        st.session_state.isProcessedCSVDownload_WF
+    )
+    config["DownloadOptions"]["add_attributes_raw"] = str(
+        st.session_state.add_attributes_DRW
+    )
+    config["DownloadOptions"]["add_attributes_processed"] = str(
+        st.session_state.isAttributes
+    )
+    config["DownloadOptions"]["axis_option"] = str(st.session_state.axis_option_DRW)
+    config["DownloadOptions"]["apply_mask"] = "True"
+    config["DownloadOptions"]["download_mask"] = "True"
+
+    # ------------------
+    # PAGE: Sensor Test
+    # ------------------
+    config["SensorTest"]["sensor_test"] = str(st.session_state.isSensorTest)
+    # Tab 1: Depth Sensor
+    config["SensorTest"]["is_depth_modified"] = str(st.session_state.isDepthModified_ST)
+    config["SensorTest"]["depth_input_option"] = str(st.session_state.depthoption_ST)
+    config["SensorTest"]["is_fixed_depth"] = str(st.session_state.isFixedDepth_ST)
+    config["SensorTest"]["fixed_depth"] = str(st.session_state.fixeddepth_ST)
+    config["SensorTest"]["is_upload_depth"] = str(st.session_state.isUploadDepth_ST)
+    config["SensorTest"]["depth_file_path"] = ""
+
+    # Tab 2: Salinity sensor
+    config["SensorTest"]["is_salinity_modified"] = str(
+        st.session_state.isSalinityModified_ST
+    )
+    config["SensorTest"]["salinity_input_option"] = str(
+        st.session_state.salinityoption_ST
+    )
+    config["SensorTest"]["is_fixed_salinity"] = str(st.session_state.isFixedSalinity_ST)
+    config["SensorTest"]["fixed_salinity"] = str(st.session_state.fixedsalinity_ST)
+    config["SensorTest"]["is_upload_salinity"] = str(
+        st.session_state.isUploadSalinity_ST
+    )
+    config["SensorTest"]["salinity_file_path"] = ""
+
+    # Tab 3: Temperature sensor
+    config["SensorTest"]["is_temperature_modified"] = str(
+        st.session_state.isTemperatureModified_ST
+    )
+    config["SensorTest"]["temperature_input_option"] = str(
+        st.session_state.temperatureoption_ST
+    )
+    config["SensorTest"]["is_fixed_temperature"] = str(
+        st.session_state.isFixedTemperature_ST
+    )
+    config["SensorTest"]["fixed_temperature"] = str(
+        st.session_state.fixedtemperature_ST
+    )
+    config["SensorTest"]["is_upload_temperature"] = str(
+        st.session_state.isUploadTemperature_ST
+    )
+    config["SensorTest"]["temperature_file_path"] = ""
+
+    # Tab 7:
+
+    config["SensorTest"]["roll_check"] = str(st.session_state.isRollCheck_ST)
+    config["SensorTest"]["roll_cutoff"] = str(st.session_state.roll_cutoff_ST)
+    config["SensorTest"]["pitch_check"] = str(st.session_state.isPitchCheck_ST)
+    config["SensorTest"]["pitch_cutoff"] = str(st.session_state.pitch_cutoff_ST)
+
+    config["SensorTest"]["velocity_modified"] = str(
+        st.session_state.isVelocityModifiedSound_ST
+    )
+
+    # ------------------
+    # PAGE: QC Test
+    # ------------------
+    # Tab 2
+    config["QCTest"]["qc_test"] = str(st.session_state.isQCTest)
+    config["QCTest"]["qc_check"] = str(st.session_state.isQCCheck_QCT)
+    config["QCTest"]["correlation"] = str(st.session_state.ct_QCT)
+    config["QCTest"]["echo_intensity"] = str(st.session_state.et_QCT)
+    config["QCTest"]["error_velocity"] = str(st.session_state.evt_QCT)
+    config["QCTest"]["false_target"] = str(st.session_state.ft_QCT)
+    config["QCTest"]["three_beam"] = str(st.session_state.is3beam_QCT)
+    config["QCTest"]["percent_good"] = str(st.session_state.pgt_QCT)
+
+    # Tab 4
+    config["QCTest"]["beam_modified"] = str(st.session_state.isBeamModified_QCT)
+    config["QCTest"]["orientation"] = str(st.session_state.beam_direction_QCT)
+
+    # ------------------
+    # PAGE: Profile Test
+    # ------------------
+    # Tab 1
+    config["ProfileTest"]["profile_test"] = str(st.session_state.isProfileTest)
+    config["ProfileTest"]["trim_ends_check"] = str(st.session_state.isTrimEndsCheck_PT)
+    config["ProfileTest"]["trim_start_ensemble"] = str(st.session_state.start_ens_PT)
+    config["ProfileTest"]["trim_end_ensemble"] = str(st.session_state.end_ens_PT)
+
+    # Tab 2
+    config["ProfileTest"]["cutbins_sidelobe_check"] = str(
+        st.session_state.isCutBinSideLobeCheck_PT
+    )
+    config["ProfileTest"]["extra_cells"] = str(st.session_state.extra_cells_PT)
+    config["ProfileTest"]["water_depth"] = str(st.session_state.water_depth_PT)
+
+    # Tab 3
+    # config["ProfileTest"]["manual_cutbins"] = str(
+    #     st.session_state.isCutBinManualCheck_PT
+    # )
+
+    # Tab 4
+    config["ProfileTest"]["regrid"] = str(st.session_state.isRegridCheck_PT)
+    config["ProfileTest"]["end_cell_option"] = str(st.session_state.end_cell_option_PT)
+    config["ProfileTest"]["interpolate"] = str(st.session_state.interpolate_PT)
+    config["ProfileTest"]["boundary"] = str(st.session_state.manualdepth_PT)
+
+    # ------------------
+    # PAGE: Velocity Test
+    # ------------------
+
+    config["VelocityTest"]["velocity_test"] = str(st.session_state.isVelocityTest)
+
+    # Tab 1
+    config["VelocityTest"]["magnetic_declination"] = str(
+        st.session_state.isMagnetCheck_VT
+    )
+    config["VelocityTest"]["magnet_method"] = str(st.session_state.magnet_method_VT)
+    config["VelocityTest"]["magnet_latitude"] = str(st.session_state.magnet_lat_VT)
+    config["VelocityTest"]["magnet_longitude"] = str(st.session_state.magnet_lon_VT)
+    config["VelocityTest"]["magnet_depth"] = str(st.session_state.magnet_depth_VT)
+    config["VelocityTest"]["magnet_year"] = str(st.session_state.magnet_year_VT)
+    config["VelocityTest"]["magnet_user_input"] = str(
+        st.session_state.magnet_user_input_VT
+    )
+
+    # Tab 2
+    config["VelocityTest"]["cutoff"] = str(st.session_state.isCutoffCheck_VT)
+    config["VelocityTest"]["max_zonal_velocity"] = str(st.session_state.maxuvel_VT)
+    config["VelocityTest"]["max_meridional_velocity"] = str(st.session_state.maxvvel_VT)
+    config["VelocityTest"]["max_vertical_velocity"] = str(st.session_state.maxwvel_VT)
+
+    # Tab 3
+    config["VelocityTest"]["despike"] = str(st.session_state.isDespikeCheck_VT)
+    config["VelocityTest"]["despike_kernel_size"] = str(
+        st.session_state.despike_kernel_VT
+    )
+    config["VelocityTest"]["despike_cutoff"] = str(st.session_state.despike_cutoff_VT)
+
+    # Tab 4
+    config["VelocityTest"]["flatline"] = str(st.session_state.isFlatlineCheck_VT)
+    config["VelocityTest"]["flatline_kernel_size"] = str(
+        st.session_state.flatline_kernel_VT
+    )
+    config["VelocityTest"]["flatline_cutoff"] = str(st.session_state.flatline_cutoff_VT)
+
+    # Optional section (attributes)
+
+    for key, value in st.session_state.attributes.items():
+        config["Attributes"][key] = str(value)  # Ensure all values are strings
+
+    # Write config.ini to a temporary file
+    # config_filepath = "config.ini"
+    # with open(config_filepath, "w") as configfile:
+    #     config.write(configfile)
+    # Create a temporary file for the config.ini
+    with tempfile.NamedTemporaryFile("w+", delete=False, suffix=".ini") as temp_config:
+        config.write(temp_config)
+        temp_config_path = temp_config.name
+    # Allow the user to download the generated config.ini file
+    with open(temp_config_path, "rb") as file:
+        st.download_button(
+            label="Download config.ini File",
+            data=file,
+            file_name="config.ini",
+        )
+
+    display_config_radio = st.radio(
+        "Do you want to display config.ini file?", ("No", "Yes")
+    )
+    if display_config_radio == "Yes":
+        st.write({section: dict(config[section]) for section in config.sections()})

pyadps/pages/09_Auto_process.py

@@ -0,0 +1,64 @@
+import os
+import tempfile
+
+import configparser
+import json
+import streamlit as st
+from utils.autoprocess import autoprocess
+
+# To make the page wider if the user presses the reload button.
+st.set_page_config(layout="wide")
+
+@st.cache_data
+def file_access(uploaded_file):
+    """
+    Function creates temporary directory to store the uploaded file.
+    The path of the file is returned
+
+    Args:
+        uploaded_file (string): Name of the uploaded file
+
+    Returns:
+        path (string): Path of the uploaded file
+    """
+    temp_dir = tempfile.mkdtemp()
+    path = os.path.join(temp_dir, uploaded_file.name)
+    with open(path, "wb") as f:
+        f.write(uploaded_file.getvalue())
+    return path
+
+
+def display_config_as_json(config_file):
+    config = configparser.ConfigParser()
+    config.read_string(config_file.getvalue().decode("utf-8"))
+    st.json({section: dict(config[section]) for section in config.sections()})
+
+
+def main():
+    st.title("ADCP Data Auto Processing Tool")
+    st.write("Upload a binary input file and config.ini file for processing.")
+
+    # File Upload Section
+    uploaded_binary_file = st.file_uploader(
+        "Upload ADCP Binary File", type=["000", "bin"]
+    )
+    uploaded_config_file = st.file_uploader(
+        "Upload Config File (config.ini)", type=["ini"]
+    )
+
+    if uploaded_binary_file and uploaded_config_file:
+        st.success("Files uploaded successfully!")
+
+        # Display config.ini file content as JSON
+        display_config_as_json(uploaded_config_file)
+
+        fpath = file_access(uploaded_binary_file)
+        # Process files
+        with st.spinner("Processing files. Please wait..."):
+            autoprocess(uploaded_config_file, binary_file_path=fpath)
+            st.success("Processing completed successfully!")
+            st.write("Processed file written.")
+
+
+if __name__ == "__main__":
+    main()

pyadps/utils/__init__.py

@@ -1,12 +1,12 @@
 # pyadps/utils/__init__.py
 
-from pyadps.utils.cutbin import *
 from pyadps.utils.plotgen import *
 from pyadps.utils.profile_test import *
 from pyadps.utils.pyreadrdi import *
 from pyadps.utils.readrdi import *
-from pyadps.utils.regrid import *
+from pyadps.utils.sensor_health import *
 from pyadps.utils.signal_quality import *
 from pyadps.utils.velocity_test import *
 from pyadps.utils.writenc import *
-
+from pyadps.utils.autoprocess import *
+from pyadps.utils.script import *