pyTEMlib 0.2025.4.2__py3-none-any.whl → 0.2025.9.1__py3-none-any.whl

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Files changed (94) hide show
  1. build/lib/pyTEMlib/__init__.py +33 -0
  2. build/lib/pyTEMlib/animation.py +640 -0
  3. build/lib/pyTEMlib/atom_tools.py +238 -0
  4. build/lib/pyTEMlib/config_dir.py +31 -0
  5. build/lib/pyTEMlib/crystal_tools.py +1219 -0
  6. build/lib/pyTEMlib/diffraction_plot.py +756 -0
  7. build/lib/pyTEMlib/dynamic_scattering.py +293 -0
  8. build/lib/pyTEMlib/eds_tools.py +826 -0
  9. build/lib/pyTEMlib/eds_xsections.py +432 -0
  10. build/lib/pyTEMlib/eels_tools/__init__.py +44 -0
  11. build/lib/pyTEMlib/eels_tools/core_loss_tools.py +751 -0
  12. build/lib/pyTEMlib/eels_tools/eels_database.py +134 -0
  13. build/lib/pyTEMlib/eels_tools/low_loss_tools.py +655 -0
  14. build/lib/pyTEMlib/eels_tools/peak_fit_tools.py +175 -0
  15. build/lib/pyTEMlib/eels_tools/zero_loss_tools.py +264 -0
  16. build/lib/pyTEMlib/file_reader.py +274 -0
  17. build/lib/pyTEMlib/file_tools.py +811 -0
  18. build/lib/pyTEMlib/get_bote_salvat.py +69 -0
  19. build/lib/pyTEMlib/graph_tools.py +1153 -0
  20. build/lib/pyTEMlib/graph_viz.py +599 -0
  21. build/lib/pyTEMlib/image/__init__.py +37 -0
  22. build/lib/pyTEMlib/image/image_atoms.py +270 -0
  23. build/lib/pyTEMlib/image/image_clean.py +197 -0
  24. build/lib/pyTEMlib/image/image_distortion.py +299 -0
  25. build/lib/pyTEMlib/image/image_fft.py +277 -0
  26. build/lib/pyTEMlib/image/image_graph.py +926 -0
  27. build/lib/pyTEMlib/image/image_registration.py +316 -0
  28. build/lib/pyTEMlib/image/image_utilities.py +309 -0
  29. build/lib/pyTEMlib/image/image_window.py +421 -0
  30. build/lib/pyTEMlib/image_tools.py +699 -0
  31. build/lib/pyTEMlib/interactive_image.py +1 -0
  32. build/lib/pyTEMlib/kinematic_scattering.py +1196 -0
  33. build/lib/pyTEMlib/microscope.py +61 -0
  34. build/lib/pyTEMlib/probe_tools.py +906 -0
  35. build/lib/pyTEMlib/sidpy_tools.py +153 -0
  36. build/lib/pyTEMlib/simulation_tools.py +104 -0
  37. build/lib/pyTEMlib/test.py +437 -0
  38. build/lib/pyTEMlib/utilities.py +314 -0
  39. build/lib/pyTEMlib/version.py +5 -0
  40. build/lib/pyTEMlib/xrpa_x_sections.py +20976 -0
  41. pyTEMlib/__init__.py +25 -3
  42. pyTEMlib/animation.py +31 -22
  43. pyTEMlib/atom_tools.py +29 -34
  44. pyTEMlib/config_dir.py +2 -28
  45. pyTEMlib/crystal_tools.py +129 -165
  46. pyTEMlib/eds_tools.py +559 -342
  47. pyTEMlib/eds_xsections.py +432 -0
  48. pyTEMlib/eels_tools/__init__.py +44 -0
  49. pyTEMlib/eels_tools/core_loss_tools.py +751 -0
  50. pyTEMlib/eels_tools/eels_database.py +134 -0
  51. pyTEMlib/eels_tools/low_loss_tools.py +655 -0
  52. pyTEMlib/eels_tools/peak_fit_tools.py +175 -0
  53. pyTEMlib/eels_tools/zero_loss_tools.py +264 -0
  54. pyTEMlib/file_reader.py +274 -0
  55. pyTEMlib/file_tools.py +260 -1130
  56. pyTEMlib/get_bote_salvat.py +69 -0
  57. pyTEMlib/graph_tools.py +101 -174
  58. pyTEMlib/graph_viz.py +150 -0
  59. pyTEMlib/image/__init__.py +37 -0
  60. pyTEMlib/image/image_atoms.py +270 -0
  61. pyTEMlib/image/image_clean.py +197 -0
  62. pyTEMlib/image/image_distortion.py +299 -0
  63. pyTEMlib/image/image_fft.py +277 -0
  64. pyTEMlib/image/image_graph.py +926 -0
  65. pyTEMlib/image/image_registration.py +316 -0
  66. pyTEMlib/image/image_utilities.py +309 -0
  67. pyTEMlib/image/image_window.py +421 -0
  68. pyTEMlib/image_tools.py +154 -928
  69. pyTEMlib/kinematic_scattering.py +1 -1
  70. pyTEMlib/probe_tools.py +1 -1
  71. pyTEMlib/test.py +437 -0
  72. pyTEMlib/utilities.py +314 -0
  73. pyTEMlib/version.py +2 -3
  74. pyTEMlib/xrpa_x_sections.py +14 -10
  75. {pytemlib-0.2025.4.2.dist-info → pytemlib-0.2025.9.1.dist-info}/METADATA +13 -16
  76. pytemlib-0.2025.9.1.dist-info/RECORD +86 -0
  77. {pytemlib-0.2025.4.2.dist-info → pytemlib-0.2025.9.1.dist-info}/WHEEL +1 -1
  78. pytemlib-0.2025.9.1.dist-info/top_level.txt +6 -0
  79. pyTEMlib/core_loss_widget.py +0 -721
  80. pyTEMlib/eels_dialog.py +0 -754
  81. pyTEMlib/eels_dialog_utilities.py +0 -1199
  82. pyTEMlib/eels_tools.py +0 -2359
  83. pyTEMlib/file_tools_qt.py +0 -193
  84. pyTEMlib/image_dialog.py +0 -158
  85. pyTEMlib/image_dlg.py +0 -146
  86. pyTEMlib/info_widget.py +0 -1086
  87. pyTEMlib/info_widget3.py +0 -1120
  88. pyTEMlib/low_loss_widget.py +0 -479
  89. pyTEMlib/peak_dialog.py +0 -1129
  90. pyTEMlib/peak_dlg.py +0 -286
  91. pytemlib-0.2025.4.2.dist-info/RECORD +0 -38
  92. pytemlib-0.2025.4.2.dist-info/top_level.txt +0 -1
  93. {pytemlib-0.2025.4.2.dist-info → pytemlib-0.2025.9.1.dist-info}/entry_points.txt +0 -0
  94. {pytemlib-0.2025.4.2.dist-info → pytemlib-0.2025.9.1.dist-info}/licenses/LICENSE +0 -0
pyTEMlib/peak_dlg.py DELETED
@@ -1,286 +0,0 @@
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- """GUI definitions for peak_fit_dialog"""
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-
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- # -*- coding: utf-8 -*-
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-
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- # Form implementation generated from reading ui file 'untitled.ui'
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- #
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- # Created by: PyQt5 UI code generator 5.12.3
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- #
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- # WARNING! All changes made in this file will be lost!
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-
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- Qt_available = True
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- try:
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- from PyQt5 import QtCore, QtGui, QtWidgets
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-
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- except:
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- Qt_available = False
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- # print('Qt dialogs are not available')
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-
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-
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- if Qt_available:
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- class UiDialog(object):
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- """GUI definitions for peak_fit_dialog"""
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-
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- def __init__(self, dialog, mode=None):
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- dialog.setObjectName('Fit Peaks')
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- dialog.resize(371, 184)
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-
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- valid_float = QtGui.QDoubleValidator()
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- valid_int = QtGui.QIntValidator()
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- valid_int.setBottom(0)
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-
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- self.layout = QtWidgets.QGridLayout()
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- self.layout.setVerticalSpacing(2)
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-
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- self.separator1 = QtWidgets.QLabel(dialog)
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- self.separator1.setAutoFillBackground(True)
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- palette = self.separator1.palette()
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- palette.setColor(self.separator1.backgroundRole(), QtCore.Qt.blue)
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- palette.setColor(self.separator1.foregroundRole(), QtCore.Qt.white)
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- self.separator1.setAlignment(QtCore.Qt.AlignCenter)
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- self.separator1.setMaximumHeight(50)
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-
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- self.separator1.setPalette(palette)
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- row = 0
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- ######################################################################
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- self.separator1.setText("Fit Region")
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- self.layout.addWidget(self.separator1, row, 0, 1, 4)
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- ######################################################################
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-
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- row += 1
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- name = 'fit_start'
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- self.label1 = QtWidgets.QLabel('Fit Start:')
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- self.edit1 = QtWidgets.QLineEdit('0')
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- self.edit1.setValidator(valid_float)
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- self.unit1 = QtWidgets.QLabel('eV')
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- self.edit1.setObjectName(name+'_edit')
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- self.unit1.setObjectName(name+'_units')
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-
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- self.layout.addWidget(self.label1, row, 0)
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- self.layout.addWidget(self.edit1, row, 1)
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- self.layout.addWidget(self.unit1, row, 2)
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-
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- row += 1
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- name = 'fit_end'
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- self.label2 = QtWidgets.QLabel('Fit End:')
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- self.edit2 = QtWidgets.QLineEdit('0')
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- self.edit2.setValidator(valid_float)
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- self.unit2 = QtWidgets.QLabel('eV')
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- self.edit2.setObjectName(name + '_edit')
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- self.unit2.setObjectName(name + '_units')
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-
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- self.layout.addWidget(self.label2, row, 0)
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- self.layout.addWidget(self.edit2, row, 1)
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- self.layout.addWidget(self.unit2, row, 2)
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-
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- self.separator2 = QtWidgets.QLabel(dialog)
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- self.separator2.setAutoFillBackground(True)
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- self.separator2.setAlignment(QtCore.Qt.AlignCenter)
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- self.separator2.setMaximumHeight(50)
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- self.separator2.setPalette(palette)
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-
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- row += 1
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- ######################################################################
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- self.separator2.setText("Processing")
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- self.layout.addWidget(self.separator2, row, 0, 1, 4)
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- ######################################################################
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- row += 1
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- # self.progress = QtWidgets.QProgressBar()
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- # self.progress.setGeometry(0, 0, 300, 25)
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- # self.progress.setMaximum(100)
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-
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- self.smooth_label = QtWidgets.QLabel('Iterations:')
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- self.iteration_list = ['0', '1', '2', '3', '4']
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- self.smooth_list = QtWidgets.QComboBox()
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- self.smooth_list.setEditable(False)
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- self.smooth_list.addItems(self.iteration_list)
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- self.smooth_list.setCurrentIndex(1)
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-
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- self.smooth_button = QtWidgets.QPushButton('Smooth', dialog)
100
- self.smooth_button.setCheckable(False)
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-
102
- self.layout.addWidget(self.smooth_label, row, 0)
103
- self.layout.addWidget(self.smooth_list, row, 1)
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- self.layout.addWidget(self.smooth_button, row, 2)
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-
106
- row += 1
107
- self.find_label = QtWidgets.QLabel('Nr. of Peaks:')
108
- self.find_edit = QtWidgets.QLineEdit('1')
109
- self.find_edit.setValidator(valid_int)
110
- self.find_button = QtWidgets.QPushButton('Find Peaks', dialog)
111
- self.find_button.setCheckable(False)
112
-
113
- self.layout.addWidget(self.find_label, row, 0)
114
- self.layout.addWidget(self.find_edit, row, 1)
115
- self.layout.addWidget(self.find_button, row, 2)
116
-
117
- self.separator2 = QtWidgets.QLabel(dialog)
118
- self.separator2.setAutoFillBackground(True)
119
- self.separator2.setAlignment(QtCore.Qt.AlignCenter)
120
- self.separator2.setMaximumHeight(50)
121
- self.separator2.setPalette(palette)
122
-
123
- row += 1
124
- ######################################################################
125
- self.separator2.setText("Peaks")
126
- self.layout.addWidget(self.separator2, row, 0, 1, 4)
127
- ######################################################################
128
-
129
- row += 1
130
- name = 'peak'
131
- self.label3 = QtWidgets.QLabel('Peaks:')
132
- self.peak_list = ['Peak 1', 'Add Peak']
133
- self.list3 = QtWidgets.QComboBox()
134
- self.list3.setEditable(False)
135
- self.list3.addItems(self.peak_list)
136
- self.unit3 = QtWidgets.QLabel('')
137
-
138
- self.layout.addWidget(self.label3, row, 0)
139
- self.layout.addWidget(self.list3, row, 1)
140
- self.layout.addWidget(self.unit3, row, 2)
141
-
142
- self.list3.setObjectName(name + '_list')
143
- # self.check3.setObjectName(name + '_check')
144
-
145
- name = 'symmetry'
146
- self.edge_sym = ['Gauss', 'Lorentzian', 'Drude', 'ZL']
147
-
148
- self.label4 = QtWidgets.QLabel('Symmetry:')
149
- self.list4 = QtWidgets.QComboBox()
150
- self.list4.setEditable(False)
151
- self.list4.addItems(self.edge_sym)
152
-
153
- row += 1
154
- self.layout.addWidget(self.label4, row, 0)
155
- self.layout.addWidget(self.list4, row, 1)
156
-
157
- self.list4.setObjectName(name + '_list')
158
-
159
- name = 'position'
160
- self.label5 = QtWidgets.QLabel('Position:')
161
- self.edit5 = QtWidgets.QLineEdit('1')
162
- self.unit5 = QtWidgets.QLabel('eV')
163
- self.edit5.setObjectName(name + '_edit')
164
-
165
- row += 1
166
- self.layout.addWidget(self.label5, row, 0)
167
- self.layout.addWidget(self.edit5, row, 1)
168
- self.layout.addWidget(self.unit5, row, 2)
169
-
170
- row += 1
171
- name = 'amplitude'
172
- self.label6 = QtWidgets.QLabel('Amplitude:')
173
- self.edit6 = QtWidgets.QLineEdit('0')
174
- self.edit6.setValidator(valid_float)
175
- self.unit6 = QtWidgets.QLabel('counts')
176
- self.edit6.setObjectName(name + '_edit')
177
- self.unit6.setObjectName(name + '_units')
178
-
179
- self.layout.addWidget(self.label6, row, 0)
180
- self.layout.addWidget(self.edit6, row, 1)
181
- self.layout.addWidget(self.unit6, row, 2)
182
-
183
- name = 'width'
184
- self.label7 = QtWidgets.QLabel('Width (FWHM):')
185
- self.edit7 = QtWidgets.QLineEdit('0')
186
- self.edit7.setValidator(valid_float)
187
- self.unit7 = QtWidgets.QLabel('eV')
188
- self.edit7.setObjectName(name + '_edit')
189
- self.unit7.setObjectName(name + '_units')
190
-
191
- row += 1
192
- self.layout.addWidget(self.label7, row, 0)
193
- self.layout.addWidget(self.edit7, row, 1)
194
- self.layout.addWidget(self.unit7, row, 2)
195
-
196
- row += 1
197
- name = 'asymmetry'
198
- self.label8 = QtWidgets.QLabel('Asymmetry:')
199
- self.edit8 = QtWidgets.QLineEdit('0')
200
- self.edit8.setValidator(valid_float)
201
- self.unit8 = QtWidgets.QLabel('%')
202
- self.label8.setObjectName(name + '_name')
203
- self.edit8.setObjectName(name + '_edit')
204
- self.unit8.setObjectName(name + '_units')
205
-
206
- self.layout.addWidget(self.label8, row, 0)
207
- self.layout.addWidget(self.edit8, row, 1)
208
- self.layout.addWidget(self.unit8, row, 2)
209
-
210
- row += 1
211
- self.fit_button = QtWidgets.QPushButton('Fit Peaks', dialog)
212
- self.fit_button.setCheckable(False)
213
-
214
- self.layout.addWidget(self.fit_button, row, 2)
215
-
216
- row += 1
217
- self.separator3 = QtWidgets.QLabel(dialog)
218
- self.separator3.setAutoFillBackground(True)
219
- self.separator3.setAlignment(QtCore.Qt.AlignCenter)
220
- self.separator3.setMaximumHeight(50)
221
- self.separator3.setPalette(palette)
222
-
223
- ######################################################################
224
- self.separator3.setText("Analysis")
225
- self.layout.addWidget(self.separator3, row, 0, 1, 4)
226
- ######################################################################
227
- if mode == 'low_loss':
228
- row += 1
229
- self.zl_button = QtWidgets.QPushButton('Zero_Loss', dialog)
230
- self.zl_button.setCheckable(False)
231
- self.drude_button = QtWidgets.QPushButton('Plasmon', dialog)
232
- self.drude_button.setCheckable(False)
233
-
234
-
235
- self.layout.addWidget(self.zl_button, row, 0)
236
- self.layout.addWidget(self.drude_button, row, 1)
237
-
238
- self.model_list = ['None', 'Zero Loss', 'Plasmon', 'Both']
239
- self.list_model = QtWidgets.QComboBox()
240
- self.list_model.setEditable(False)
241
- self.list_model.addItems(self.model_list)
242
-
243
-
244
- self.layout.addWidget(self.list_model, row, 2)
245
-
246
- else:
247
- row += 1
248
- self.labelwl = QtWidgets.QLabel('White-Line Ratio:')
249
- self.wl_list = ['Ratio']
250
- self.listwl = QtWidgets.QComboBox()
251
- self.listwl.setEditable(False)
252
- self.listwl.addItems(self.wl_list)
253
- self.unitswl = QtWidgets.QLabel('')
254
-
255
- self.layout.addWidget(self.labelwl, row, 0)
256
- self.layout.addWidget(self.listwl, row, 1)
257
- self.layout.addWidget(self.unitswl, row, 2)
258
-
259
- row += 1
260
- self.labelwls = QtWidgets.QLabel('White-Line Sum:')
261
- self.wls_list = ['Sum']
262
- self.listwls = QtWidgets.QComboBox()
263
- self.listwls.setEditable(False)
264
- self.listwls.addItems(self.wls_list)
265
- self.unitswls = QtWidgets.QLabel('')
266
-
267
- self.layout.addWidget(self.labelwls, row, 0)
268
- self.layout.addWidget(self.listwls, row, 1)
269
- self.layout.addWidget(self.unitswls, row, 2)
270
-
271
- row += 1
272
- self.progress = QtWidgets.QProgressBar()
273
- self.progress.setGeometry(0, 0, 300, 25)
274
- self.progress.setMaximum(100)
275
- self.do_all_button = QtWidgets.QPushButton('Do All', dialog)
276
-
277
- self.layout.addWidget(self.do_all_button, row, 0)
278
- self.layout.addWidget(self.progress, row, 1)
279
-
280
-
281
- dialog.setLayout(self.layout)
282
- dialog.setWindowTitle('Peak Fit Input')
283
-
284
- # self.buttonBox.accepted.connect(Dialog.accept)
285
- # self.buttonBox.rejected.connect(Dialog.reject)
286
- QtCore.QMetaObject.connectSlotsByName(dialog)
@@ -1,38 +0,0 @@
1
- pyTEMlib/__init__.py,sha256=nEN93amIEoZxO7rJgN71ABeCoXrnmaywBbE97l5lPio,178
2
- pyTEMlib/animation.py,sha256=G9ykYo6yB5jexjKienShO9C2b8xEXKbf7t47apwcwTw,25188
3
- pyTEMlib/atom_tools.py,sha256=iXJbK66k3HbTNOGSWRLeUV01JlggUo1Qq89HJqbSv54,7341
4
- pyTEMlib/config_dir.py,sha256=4evlo9P2Yht-AnqaLI-WweLjDQcislbAP3I7P7EZsPU,2085
5
- pyTEMlib/core_loss_widget.py,sha256=XQk071ZHMGYOM6RTSIaXQlZtnFQjUyxTWbQ2ZXOFMfU,30901
6
- pyTEMlib/crystal_tools.py,sha256=g4OXyvd5NLw7vaXhjDP3P6VZpVV6eiyuPn8MdgR2amI,61652
7
- pyTEMlib/diffraction_plot.py,sha256=pM5d3bdBGa8LlPZ5lw8sLT94mlYTXELxPLv-jUP2FWY,27959
8
- pyTEMlib/dynamic_scattering.py,sha256=O9MxnxfndWJ2VhQRjksKNQ4yY7y-gN_hitRQ4Qox4ns,9472
9
- pyTEMlib/eds_tools.py,sha256=Ilof2Cars-1ILXx5g2RsU2G4BgrPwjOHgQ7-OabmbrU,28000
10
- pyTEMlib/eels_dialog.py,sha256=QG_PU3uuzus_3I3zjfaxb2a9iYq8B053zYw-B52JklM,32595
11
- pyTEMlib/eels_dialog_utilities.py,sha256=73W9jFbPx-eeLEiSaBptTgGLr40bIYYfSyzLnZbhfvo,51761
12
- pyTEMlib/eels_tools.py,sha256=pl75ZDQHz1JngxD84T_595Kfrl5TEJSETPGgkXfBtrA,88688
13
- pyTEMlib/file_tools.py,sha256=RniTJrcuiyt7PefE5SSY_z2pTZPTNhFRjb2oVXVa4nE,66373
14
- pyTEMlib/file_tools_qt.py,sha256=tLZACS4JyGH_AOzNR_SGAhjA01y4VJB261opPhGMlm8,7223
15
- pyTEMlib/graph_tools.py,sha256=VWuTgFGeu4gn4cfRgf-76kO6u2B1ZV_dz6gLfx2k4NY,46570
16
- pyTEMlib/graph_viz.py,sha256=m5PwSn6l2r0bsaLWBDSHc9IGR3_PneG2BrZgnEdi07I,13644
17
- pyTEMlib/image_dialog.py,sha256=F-ZgKq7UnMtPPd1b9eqb7t8MXDfWN-8hVKwB2Il0x28,6235
18
- pyTEMlib/image_dlg.py,sha256=n5gradDiYOFGEQ3k_Wlk9RUYYzl4bl_hKLzNVcYteNE,5694
19
- pyTEMlib/image_tools.py,sha256=g0P_r0Ygehadi-aVufQs0CahB1N7Teyrx2oTEOBChmA,53007
20
- pyTEMlib/info_widget.py,sha256=lkzQOuNVlkaasiZDtc5UtYk541-plYNfnW4DQwQB_iA,53467
21
- pyTEMlib/info_widget3.py,sha256=QSbdSj6m57KQTir2fNhulVgjOu9EQL31c-9SzTlghnE,55495
22
- pyTEMlib/interactive_image.py,sha256=5PwypcA1OjLAD-fi8bmWWFHuOjdIPVY9Dh59V24WuDA,34
23
- pyTEMlib/kinematic_scattering.py,sha256=CUdJnclkok7d8qm_jDUF92MVHrmaTeMkKdvxxB6AqvA,43309
24
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- pyTEMlib/peak_dlg.py,sha256=qcjcnhwpGa4jBCeXzwQz9sCyX-tHsLLQ67ToqfKOiQY,11550
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- pyTEMlib/probe_tools.py,sha256=sDW9CW3SMwjvSHYcEufceismHv_LVkqxcS-gCtEklCg,37926
29
- pyTEMlib/sidpy_tools.py,sha256=0oIx-qMtEmcZmLazQKW19dd-KoxyY3B15aIeMcyHA8E,4878
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- pyTEMlib/simulation_tools.py,sha256=RmegD5TpQMU68uASvzZWVplAqs7bM5KkF6bWDWLjyc0,2799
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- pyTEMlib/version.py,sha256=sLEWA3eeGfLH2FDGCSFBKKzQ7hDmULfKjeBegz_cqAI,94
32
- pyTEMlib/xrpa_x_sections.py,sha256=m4gaH7gaJiNi-CsIT9aKoH4fB6MQIAe876kxEmzSebI,1825392
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- pytemlib-0.2025.4.2.dist-info/licenses/LICENSE,sha256=7HdBF6SXIBd38bHOKkQd4DYR1KV-OYm9mwB16fM-984,1062
34
- pytemlib-0.2025.4.2.dist-info/METADATA,sha256=C-qYZn0VpCQOyMbwDFbgxjzcBYzz8D76cucXAxq0R7o,3515
35
- pytemlib-0.2025.4.2.dist-info/WHEEL,sha256=Nw36Djuh_5VDukK0H78QzOX-_FQEo6V37m3nkm96gtU,91
36
- pytemlib-0.2025.4.2.dist-info/entry_points.txt,sha256=zn2yO1IWTutI3c7C9e3GdARCvm43JURoOhqQ8YylV4Y,43
37
- pytemlib-0.2025.4.2.dist-info/top_level.txt,sha256=rPLVH0UJxrPSPgSoKScTjL1K_X69JFzsYYnDnYTYIlU,9
38
- pytemlib-0.2025.4.2.dist-info/RECORD,,
@@ -1 +0,0 @@
1
- pyTEMlib