pyNIBS 0.2024.8__py3-none-any.whl → 0.2026.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (101) hide show
  1. pynibs/__init__.py +26 -14
  2. pynibs/coil/__init__.py +6 -0
  3. pynibs/{coil.py → coil/coil.py} +213 -543
  4. pynibs/coil/export.py +508 -0
  5. pynibs/congruence/__init__.py +4 -1
  6. pynibs/congruence/congruence.py +37 -45
  7. pynibs/congruence/ext_metrics.py +40 -11
  8. pynibs/congruence/stimulation_threshold.py +1 -2
  9. pynibs/expio/Mep.py +120 -370
  10. pynibs/expio/__init__.py +10 -0
  11. pynibs/expio/brainsight.py +34 -37
  12. pynibs/expio/cobot.py +25 -25
  13. pynibs/expio/exp.py +10 -7
  14. pynibs/expio/fit_funs.py +3 -0
  15. pynibs/expio/invesalius.py +70 -0
  16. pynibs/expio/localite.py +190 -91
  17. pynibs/expio/neurone.py +139 -0
  18. pynibs/expio/signal_ced.py +345 -2
  19. pynibs/expio/visor.py +16 -15
  20. pynibs/freesurfer.py +34 -33
  21. pynibs/hdf5_io/hdf5_io.py +149 -132
  22. pynibs/hdf5_io/xdmf.py +35 -31
  23. pynibs/mesh/__init__.py +1 -1
  24. pynibs/mesh/mesh_struct.py +77 -92
  25. pynibs/mesh/transformations.py +121 -21
  26. pynibs/mesh/utils.py +191 -99
  27. pynibs/models/_TMS.py +2 -1
  28. pynibs/muap.py +1 -2
  29. pynibs/neuron/__init__.py +10 -0
  30. pynibs/neuron/models/mep.py +566 -0
  31. pynibs/neuron/neuron_regression.py +98 -8
  32. pynibs/optimization/__init__.py +12 -2
  33. pynibs/optimization/{optimization.py → coil_opt.py} +157 -133
  34. pynibs/optimization/multichannel.py +1174 -24
  35. pynibs/optimization/workhorses.py +7 -8
  36. pynibs/regression/__init__.py +4 -2
  37. pynibs/regression/dual_node_detection.py +229 -219
  38. pynibs/regression/regression.py +92 -61
  39. pynibs/roi/__init__.py +4 -1
  40. pynibs/roi/roi_structs.py +19 -21
  41. pynibs/roi/{roi.py → roi_utils.py} +56 -33
  42. pynibs/subject.py +24 -14
  43. pynibs/util/__init__.py +20 -4
  44. pynibs/util/dosing.py +4 -5
  45. pynibs/util/quality_measures.py +39 -38
  46. pynibs/util/rotations.py +116 -9
  47. pynibs/util/{simnibs.py → simnibs_io.py} +29 -19
  48. pynibs/util/{util.py → utils.py} +20 -22
  49. pynibs/visualization/para.py +4 -4
  50. pynibs/visualization/render_3D.py +4 -4
  51. pynibs-0.2026.1.dist-info/METADATA +105 -0
  52. pynibs-0.2026.1.dist-info/RECORD +69 -0
  53. {pyNIBS-0.2024.8.dist-info → pynibs-0.2026.1.dist-info}/WHEEL +1 -1
  54. pyNIBS-0.2024.8.dist-info/METADATA +0 -723
  55. pyNIBS-0.2024.8.dist-info/RECORD +0 -107
  56. pynibs/data/configuration_exp0.yaml +0 -59
  57. pynibs/data/configuration_linear_MEP.yaml +0 -61
  58. pynibs/data/configuration_linear_RT.yaml +0 -61
  59. pynibs/data/configuration_sigmoid4.yaml +0 -68
  60. pynibs/data/network mapping configuration/configuration guide.md +0 -238
  61. pynibs/data/network mapping configuration/configuration_TEMPLATE.yaml +0 -42
  62. pynibs/data/network mapping configuration/configuration_for_testing.yaml +0 -43
  63. pynibs/data/network mapping configuration/configuration_modelTMS.yaml +0 -43
  64. pynibs/data/network mapping configuration/configuration_reg_isi_05.yaml +0 -43
  65. pynibs/data/network mapping configuration/output_documentation.md +0 -185
  66. pynibs/data/network mapping configuration/recommendations_for_accuracy_threshold.md +0 -77
  67. pynibs/data/neuron/models/L23_PC_cADpyr_biphasic_v1.csv +0 -1281
  68. pynibs/data/neuron/models/L23_PC_cADpyr_monophasic_v1.csv +0 -1281
  69. pynibs/data/neuron/models/L4_LBC_biphasic_v1.csv +0 -1281
  70. pynibs/data/neuron/models/L4_LBC_monophasic_v1.csv +0 -1281
  71. pynibs/data/neuron/models/L4_NBC_biphasic_v1.csv +0 -1281
  72. pynibs/data/neuron/models/L4_NBC_monophasic_v1.csv +0 -1281
  73. pynibs/data/neuron/models/L4_SBC_biphasic_v1.csv +0 -1281
  74. pynibs/data/neuron/models/L4_SBC_monophasic_v1.csv +0 -1281
  75. pynibs/data/neuron/models/L5_TTPC2_cADpyr_biphasic_v1.csv +0 -1281
  76. pynibs/data/neuron/models/L5_TTPC2_cADpyr_monophasic_v1.csv +0 -1281
  77. pynibs/tests/data/InstrumentMarker20200225163611937.xml +0 -19
  78. pynibs/tests/data/TriggerMarkers_Coil0_20200225163443682.xml +0 -14
  79. pynibs/tests/data/TriggerMarkers_Coil1_20200225170337572.xml +0 -6373
  80. pynibs/tests/data/Xdmf.dtd +0 -89
  81. pynibs/tests/data/brainsight_niiImage_nifticoord.txt +0 -145
  82. pynibs/tests/data/brainsight_niiImage_nifticoord_largefile.txt +0 -1434
  83. pynibs/tests/data/brainsight_niiImage_niifticoord_mixedtargets.txt +0 -47
  84. pynibs/tests/data/create_subject_testsub.py +0 -332
  85. pynibs/tests/data/data.hdf5 +0 -0
  86. pynibs/tests/data/geo.hdf5 +0 -0
  87. pynibs/tests/test_coil.py +0 -474
  88. pynibs/tests/test_elements2nodes.py +0 -100
  89. pynibs/tests/test_hdf5_io/test_xdmf.py +0 -61
  90. pynibs/tests/test_mesh_transformations.py +0 -123
  91. pynibs/tests/test_mesh_utils.py +0 -143
  92. pynibs/tests/test_nnav_imports.py +0 -101
  93. pynibs/tests/test_quality_measures.py +0 -117
  94. pynibs/tests/test_regressdata.py +0 -289
  95. pynibs/tests/test_roi.py +0 -17
  96. pynibs/tests/test_rotations.py +0 -86
  97. pynibs/tests/test_subject.py +0 -71
  98. pynibs/tests/test_util.py +0 -24
  99. /pynibs/{regression/score_types.py → neuron/models/m1_montbrio.py} +0 -0
  100. {pyNIBS-0.2024.8.dist-info → pynibs-0.2026.1.dist-info/licenses}/LICENSE +0 -0
  101. {pyNIBS-0.2024.8.dist-info → pynibs-0.2026.1.dist-info}/top_level.txt +0 -0
pynibs-0.2026.1.dist-info/RECORD ADDED
@@ -0,0 +1,69 @@
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+ pynibs/__init__.py,sha256=0JL8h5aTLb-ODfhVU2Y2xKwyGy2BSXrSfPFGNTj344Y,1585
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+ pynibs/freesurfer.py,sha256=MvY5TnrD6JswbC5QdBe5xQh20IKXeHETcT9THmQNM8E,21943
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+ pynibs/muap.py,sha256=hp1-SBuoTs7OQLIegEU8MBr7j6B7t8yUt-7LTJLdzvA,11761
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+ pynibs/subject.py,sha256=630iEdRkwWuWx9jJ5Ot9YM4lL_p3Ad_4PVsBCGXBgYQ,33344
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+ pynibs/tensor_scaling.py,sha256=Im1DNUdr_vOJOhpUczbUD-Qkg9LV_kUN3wLSlK7y0mw,4310
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+ pynibs/tms_pulse.py,sha256=YFPk0HRRehX39TFDp9doKblcJN8D_DsTA9w-lXyJNvc,988
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+ pynibs/coil/__init__.py,sha256=N06mINsbtkxFCwMK8rrMlPbzJs_GrjIeV6SZBU3fGqA,165
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+ pynibs/coil/coil.py,sha256=BkETVglDCnRa253rFMUqv-TLG9VpYyU9yJGPB-2QQ2Y,43391
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+ pynibs/coil/export.py,sha256=iircVthSYU4GvgiLUvvU-fg_GYCCy7HkKsL9Y2f3qJE,18972
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+ pynibs/congruence/__init__.py,sha256=L_3yKB_purai7NdMTT13JgcnG1q9-yXQ82S22WPDl40,1140
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+ pynibs/congruence/congruence.py,sha256=uAbtuLRP8fUYNcAA2XmSiCnK0jLvSrDwmkNjyZZEp44,51919
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+ pynibs/congruence/ext_metrics.py,sha256=L8mEfTeI0IJlj9EYxws1YMAGppwhx-41CoqIM8pJTIw,10866
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+ pynibs/congruence/stimulation_threshold.py,sha256=DaJLynbJ7WgFs6B3exPoqR0VzAlTlSNfik8jAwpJ5JQ,14456
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+ pynibs/expio/Mep.py,sha256=PtY_06pMqQbjAWSTqzp4kmwS5DsGVBWOrmBTroFgjAU,45861
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+ pynibs/expio/__init__.py,sha256=xG45T4NzvfftPUqrMPt_QpvBPohifCaUWZI2qHbLx2s,564
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+ pynibs/expio/brainsight.py,sha256=HTBm9rA6zvjIL6uGlGNMKxk6YHn3Jf_NhDFU0dBDWBU,41275
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+ pynibs/expio/brainvis.py,sha256=04bC4Tbcex-nl31-D26v2pEpCtkslCCJsM_IbKeUSh8,1439
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+ pynibs/expio/cobot.py,sha256=RLqO-HU1JCSen08Gx0s7GzbRjjD0bysP2AYP04thciY,9573
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+ pynibs/expio/exp.py,sha256=BTJ_2wPl6qHPgwvNJUKI3o3PAaHPWsu73TaqRAgxnm8,71800
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+ pynibs/expio/fit_funs.py,sha256=sVEvdYPQk1UW75Bcm36IKxe2lCqHuIvFwcpfuaKHBz4,6017
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+ pynibs/expio/invesalius.py,sha256=MDo7h8GWyxjmJQKVaPTILYXTwSloNaQ0QGWrDiRvD_o,2535
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+ pynibs/expio/localite.py,sha256=PoYMLPUEXnVy-QEzR6GaI9ONVjemB8aMctMpuGThKRc,86067
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+ pynibs/expio/neurone.py,sha256=je2MtzGZ8BFaMtBiQZ_yH_PkLQ1b3-pLLsTeSRBEb40,5620
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+ pynibs/expio/signal_ced.py,sha256=jyMdqZuuHBG_T_TkrM2WRcxfKO5kUjfOxxZS1NPIqak,15778
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+ pynibs/expio/visor.py,sha256=N364H_Zhq6XvRXn1Wnud5pA1FaC3giCWKGYpAzi8MWk,23746
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+ pynibs/hdf5_io/__init__.py,sha256=nI4CnHWW6O45AoTYBV7bYqI_9G7EPd3IE5ILHGL7TPE,519
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+ pynibs/hdf5_io/hdf5_io.py,sha256=IzsHR3VPMz2hgOdWbFt7pR6ckkAD7aSVNqntlsv6nSY,83537
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+ pynibs/hdf5_io/xdmf.py,sha256=NleK74hA9xuQ5v94hzl4D78KzG0Tifrik6tGYUIUsE0,68341
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+ pynibs/mesh/__init__.py,sha256=7G81nPam09ITAqcuiUbdcE3i2MTjUNalKl31FP75hL8,79
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+ pynibs/mesh/mesh_struct.py,sha256=Cnp5o0c7-dH6MxHlRImByHm_KmtYh7Faud4cL-KmYlk,61532
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+ pynibs/mesh/transformations.py,sha256=LGWWbuUBLHJFUCzkvzAnkUM0w3g1hyIyaUm1ReZSWmE,38437
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+ pynibs/mesh/utils.py,sha256=39L43iixq8GFnz9oE_DGUwCTLEJ1TQXIS4VG3O-Nmzc,45824
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+ pynibs/models/_TMS.py,sha256=bylPDFoqZ1uoUqRmYnatNQTvzWWUwFtGLjmsX2pfFoM,9210
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+ pynibs/models/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ pynibs/neuron/__init__.py,sha256=xzuHpAXzunATMewoeC18y14L3KC36jVgGh58zdhkea8,730
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+ pynibs/neuron/neuron_regression.py,sha256=lIyI67PwJh43MccGMxvJl7zmK-Noa6pQH--O1tsOeVA,16083
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+ pynibs/neuron/util.py,sha256=g5EEtHGkLqw-OgMGmF6uPH_xGf0eK7NrQGCws6MNqmg,1524
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+ pynibs/neuron/models/m1_montbrio.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ pynibs/neuron/models/mep.py,sha256=p1veh5jDPk8dVGOKWljP7KaCwWO7zHm9WPmoikhEyEU,20744
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+ pynibs/optimization/__init__.py,sha256=2dKHjVtE8Iz_qR7ZqC1zNc3p0ihXK3QvcjAwQNNzczw,558
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+ pynibs/optimization/coil_opt.py,sha256=pEEpqTVs1v6XcYD-N0NWXKmauRw0IfbZsQIGFc1bOv0,72721
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+ pynibs/optimization/multichannel.py,sha256=7HUzyPOnRxfPXDO3SDUVo4fHVaHYIfLw84cnbHJfWvw,53259
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+ pynibs/optimization/opt_mep.py,sha256=0nblDVf2ROCcPELRhB7E4AE319Yg2Wb9Y1N696v1qs4,4390
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+ pynibs/optimization/workhorses.py,sha256=SFpvm6FM8QavVMoVBuNVEysJ9HKOvuP7Y1pzHeZW4dU,24401
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+ pynibs/pckg/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ pynibs/pckg/biosig/biosig4c++-1.9.5.src_fixed.tar.gz,sha256=gPEK71ZQzZm51WKj8gJU7i4mm-YJVSOgJasBhGBsKxE,1085676
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+ pynibs/pckg/libeep/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ pynibs/pckg/libeep/pyeep.so,sha256=wk8CsDBa7un8Ig5a-SQaV2XGwJbqn_ltuyCC2HiLrRM,230704
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+ pynibs/regression/__init__.py,sha256=9sax7ZDUhLvRYjeNEytUEPyUsttZG52rpRaUkyygQnk,726
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+ pynibs/regression/dual_node_detection.py,sha256=sL_VW5safrRXGKSqrNh-KubkyqWFRWPapegcdHEJeNk,102351
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+ pynibs/regression/regression.py,sha256=ka497T2HKRbCn3tvZFq39fTmuRESlScC4cJU1H9peC4,120793
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+ pynibs/roi/__init__.py,sha256=RfQHzI-zdY_y2eWNgrg5FbEDB0H71xjwQumAXmkO9DM,117
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+ pynibs/roi/roi_structs.py,sha256=z5bEYw5Y_8BjbxN3GBY0OKWrhT2JSnvD-0tsme5MnXQ,53564
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+ pynibs/roi/roi_utils.py,sha256=mcxHZji58OKIJXP7BVWt-twKASzKvBE_R4oBWzBaFNI,35617
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+ pynibs/util/__init__.py,sha256=fKi7lEe-vGW50HnG2ao8BkSkMnBP54qp6LZc3WxbUnI,471
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+ pynibs/util/dosing.py,sha256=KqzuEO5JJY6EH3IwDLIHztQf0_AIWUNYFBHUY_rLKc8,9260
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+ pynibs/util/quality_measures.py,sha256=IfO3vEP6NyWVfZ4UHhrvcJRqeJHHwMtWy43xIHQI-ds,22141
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+ pynibs/util/rotations.py,sha256=0bWJW_5oBzo1SqHf43l-X0J5fOHSEMLlDw7k1_o09hg,12264
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+ pynibs-0.2026.1.dist-info/licenses/LICENSE,sha256=GkQ9UpUz_pzXqfniZT3PopCfmi1K2wSZpiIqcHnMbMA,32476
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+ pynibs-0.2026.1.dist-info/METADATA,sha256=H_tD7oIFJ8xSdecVfvSZ8AcsHl1wkhIo9AFjyf-0Iys,6649
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+ pynibs-0.2026.1.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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+ pynibs-0.2026.1.dist-info/top_level.txt,sha256=9ZHaYB8yuIaluoqNxocpuDPbJak9szUD0bESYmGZpgQ,7
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+ pynibs-0.2026.1.dist-info/RECORD,,
{pyNIBS-0.2024.8.dist-info → pynibs-0.2026.1.dist-info}/WHEEL RENAMED
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: bdist_wheel (0.42.0)
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+ Generator: setuptools (80.10.2)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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